Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 3358.5 1715 100.0
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 3026.1 1867 85.3
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2791.5 1791 81.6
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2496.8 1715 75.8
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2400.5 1802 70.1
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2372.8 1803 69.9
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2345.5 1519 81.0
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2342.0 1754 71.3
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2307.3 1799 67.9
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2297.3 1805 68.8
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2293.8 1805 68.4
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2287.7 1813 67.4
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2275.7 1806 67.7
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2273.4 1810 67.0
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2272.7 1788 68.1
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2248.0 1809 67.2
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2240.7 1797 66.5
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2239.2 1803 66.4
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2231.8 1800 66.3
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2226.1 1796 66.2
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2226.1 1813 65.7
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2225.3 1794 66.7
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2221.8 1871 65.3
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2218.4 1805 65.8
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2215.7 1765 66.9
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2215.3 1804 66.5
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2209.9 1701 69.3
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2195.6 1756 66.1
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2190.6 1774 65.3
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2189.1 1810 65.2
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2182.5 1806 65.1
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2177.5 1802 65.3
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2177.5 1802 64.5
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2174.1 1808 65.1
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2173.3 1774 64.5
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2168.3 1802 64.9
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2166.0 1811 64.8
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2152.5 1807 64.0
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2150.9 1784 65.1
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2139.0 1787 64.5
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2136.7 1793 63.7
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2130.9 1773 64.3
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2129.8 1852 62.7
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2127.1 1784 63.9
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2125.9 1824 63.3
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2125.9 1805 63.9
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2121.3 1802 63.9
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2113.6 1812 63.4
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2113.6 1806 63.8
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2103.9 1792 63.3
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2101.2 1784 63.8
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2096.2 1743 63.9
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 2065.0 1851 61.8
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 2063.5 1710 65.3
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2063.1 1688 65.2
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 2057.3 1856 61.5
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 2050.4 1818 62.0
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2034.2 1853 59.8
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 2032.3 1752 62.6
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 2028.8 1839 59.3
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 2020.4 1697 64.0
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2019.2 1646 65.4
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 2018.4 1837 59.3
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 2016.9 1840 59.1
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 2015.0 1806 59.9
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2012.7 1787 62.1
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 2012.3 1791 61.2
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2009.2 1843 59.2
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2009.2 1843 59.2
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 2004.6 1730 62.7
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 2001.1 1838 59.1
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1987.2 1856 58.0
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1986.5 1842 58.8
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1986.5 1842 58.8
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1976.8 1844 58.1
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1972.6 1860 57.9
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1969.5 1705 62.9
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1964.9 1776 61.7
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1963.0 1850 58.0
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1948.7 1806 58.3
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1942.9 1512 69.3
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1939.1 1455 71.1
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1928.3 1868 58.0
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1903.3 1542 66.3
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1879.4 1830 57.7
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1874.4 1494 66.9
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1870.9 1594 63.7
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1817.0 1694 59.7
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1735.7 1712 57.6
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1659.0 1345 65.9
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1636.3 1559 57.4
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1600.9 1812 51.3
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1573.5 1635 54.2
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1456.4 1384 58.2
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1384.0 1809 44.9
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1364.0 985 73.5
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1339.3 1827 44.3
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1289.6 1770 43.7
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1267.3 1744 43.5
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1215.7 1183 58.9
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1153.3 1001 62.8
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 0.0e+00 1109.0 983 61.0
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.2e-292 1010.0 1079 51.2
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 2.9e-292 1009.6 908 60.0
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 7.8e-274 948.3 1522 39.4
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 1.4e-243 847.8 642 66.7
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 3.3e-240 836.6 787 59.7
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 6.1e-226 789.3 635 67.4
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.6e-194 684.9 490 75.1
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 7.0e-190 669.5 882 45.9
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.7e-189 667.5 517 67.9
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 1.6e-181 641.7 560 62.5
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 6.6e-164 583.2 480 65.6
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.1e-158 565.8 462 67.3
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.3e-156 558.9 727 45.7
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.0e-145 520.8 523 53.3
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 4.9e-143 513.8 480 59.0
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 1.4e-142 512.3 560 52.9
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 4.8e-138 497.3 418 63.6
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 6.5e-127 460.3 365 66.8
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 4.8e-122 444.1 437 57.0
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.3e-106 392.9 293 69.3
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 9.4e-102 376.7 325 60.9
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 6.1e-101 374.0 374 52.9
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.5e-96 357.8 283 65.0
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.0e-87 330.1 371 53.1
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 7.3e-78 297.4 1660 23.3
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 3.7e-74 285.0 275 55.6
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 2.3e-71 275.8 399 44.9
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 8.9e-68 263.8 256 60.9
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.2e-67 263.5 221 60.6
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 6.2e-53 214.5 164 65.9
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.7e-50 206.5 196 59.2
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.9e-49 203.0 210 55.2
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 8.7e-47 194.1 523 28.1
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.4e-43 182.2 420 33.8
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 1.9e-41 176.4 120 71.7
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.1e-30 140.6 163 49.7
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.1e-30 140.6 194 46.9
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 5.3e-28 131.7 102 66.7
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 2.2e-26 126.3 70 87.1
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 2.5e-25 122.9 77 80.5
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 7.1e-25 121.3 88 69.3
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 2.3e-23 116.3 176 40.9
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 5.7e-22 111.7 78 69.2
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 7.4e-22 111.3 92 64.1
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 7.4e-22 111.3 83 66.3
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 1.3e-21 110.5 75 76.0
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 2.8e-21 109.4 74 74.3
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 4.8e-21 108.6 71 73.2
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 4.8e-21 108.6 78 65.4
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 1.1e-20 107.5 104 55.8
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 4.1e-20 105.5 74 75.7
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 3.4e-19 102.4 74 74.3
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 1.7e-18 100.1 76 67.1
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.9e-18 99.4 107 52.3
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 8.5e-18 97.8 107 51.4
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 1.2e-16 94.0 81 63.0
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 1.2e-16 94.0 89 55.1
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.3e-15 90.5 59 72.9
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 6.7e-15 88.2 253 28.5
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.6e-13 83.6 117 41.0
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 8.2e-13 81.3 111 46.8
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 8.2e-13 81.3 61 62.3
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 2.4e-12 79.7 73 58.9
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 3.4e-11 75.9 53 69.8
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 7.7e-11 74.7 87 48.3
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.0e-10 74.3 101 39.6
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.3e-10 73.9 153 28.8
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.7e-10 73.6 64 51.6
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.2e-10 73.2 105 43.8
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 6.5e-10 71.6 64 50.0


User provided reference genes

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