Gene: Solyc03g059420.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g059420.4
  • Transcript Identifier Solyc03g059420.4.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 25688072-25701425 : positive

Gene Family Information

  • ID HOM05D003939
  • #Genes/#Species 177/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g059420.4.1
  • uniprot A0A3Q7FI69
  • gene_id Solyc03g059420

Descriptions

  • Description Sister chromatid cohesion protein (AHRD V3.3 *** A0A2G2ZNX8_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1990414
IBA
GOA Databasereplication-born double-strand break repair via sister chromatid exchange
GO:0051177
ISO
PLAZA Integrative Orthologymeiotic sister chromatid cohesion AT5G15540
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G15540
GO:0034508
ISO
PLAZA Integrative Orthologycentromere complex assembly AT5G15540
GO:0007062
ISO
PLAZA Integrative Orthologysister chromatid cohesion AT5G15540
GO:0034087
IBA
GOA Databaseestablishment of mitotic sister chromatid cohesion
GO:0071169
IBA
GOA Databaseestablishment of protein localization to chromatin
GO:0010468
IEA
GOA Databaseregulation of gene expression
GO:0010468
IEA
InterProregulation of gene expression
GO:0061780
IEA
GOA Databasemitotic cohesin loading
GO:0061780
IEA
InterPromitotic cohesin loading
GO:0007049
IEA
GOA Databasecell cycle

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G15540
GO:0003682
IBA
IEA
GOA Databasechromatin binding
GO:0003682
IEA
InterProchromatin binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090694
IBA
GOA DatabaseScc2-Scc4 cohesin loading complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR026003 HEAT repeat associated with sister chromatid cohesion protein
IPR019787 Zinc finger, PHD-finger
IPR011011 Zinc finger, FYVE/PHD-type
IPR001965 Zinc finger, PHD-type
IPR033031 Scc2/Nipped-B family
IPR024986 Sister chromatid cohesion C-terminal domain
IPR016024 Armadillo-type fold
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR011989 Armadillo-like helical
Mapman id Description
13.3.4.2.1.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2-SCC4 adherin complex.adherin (SCC2)