Gene: Sopen03g014250

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g014250
  • Transcript Identifier Sopen03g014250.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 27090464-27114007 : positive

Gene Family Information

  • ID HOM05D003939
  • #Genes/#Species 177/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g014250.1

Descriptions

  • Description Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis. | EMBRYO DEFECTIVE 2773 (EMB2773) | FUNCTIONS IN: binding, zinc ion binding | INVOLVED IN: centromere complex assembly, sister chromatid cohesion, embryo development ending in seed dormancy, meiotic sister chromatid cohesion | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , Zinc finger, FYVE/PHD-type , Armadillo-type fold , Zinc finger, PHD-finger .
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010468
IEA
InterProregulation of gene expression
GO:0061780
IEA
InterPromitotic cohesin loading
GO:0007062
ISO
PLAZA Integrative Orthologysister chromatid cohesion AT5G15540
GO:0034508
ISO
PLAZA Integrative Orthologycentromere complex assembly AT5G15540
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G15540
GO:0051177
ISO
PLAZA Integrative Orthologymeiotic sister chromatid cohesion AT5G15540

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003682
IEA
InterProchromatin binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G15540

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016024 Armadillo-type fold
IPR024986 Sister chromatid cohesion C-terminal domain
IPR019787 Zinc finger, PHD-finger
IPR011011 Zinc finger, FYVE/PHD-type
IPR001965 Zinc finger, PHD-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR011989 Armadillo-like helical
IPR033031 Scc2/Nipped-B family
IPR026003 HEAT repeat associated with sister chromatid cohesion protein
Mapman id Description
13.3.4.2.1.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2-SCC4 adherin complex.adherin (SCC2)