Gene: AT5G15540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G15540
  • Transcript Identifier AT5G15540.1
  • Gene Type Coding gene
  • Location Chr5 : 5047887-5057411 : negative

Gene Family Information

  • ID HOM05D003939
  • #Genes/#Species 177/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G15540.1
  • symbol EMB2773
  • Alias ATSCC2,ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2,SCC2,SISTER-CHROMATID COHESION 2
  • full_name EMBRYO DEFECTIVE 2773
  • uniprot A5HEI1

Descriptions

  • Description PHD finger family protein
  • Computational description EMBRYO DEFECTIVE 2773 (EMB2773); FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: centromere complex assembly, sister chromatid cohesion, embryo development ending in seed dormancy, meiotic sister chromatid cohesion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Armadillo-like helical (InterPro:IPR011989), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Armadillo-type fold (InterPro:IPR016024), Zinc finger, PHD-finger (InterPro:IPR019787); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034087
IBA
Gene Ontologyestablishment of mitotic sister chromatid cohesion1
GO:0061780
IEA
Gene Ontologymitotic cohesin loading
GO:0061780
IEA
InterPromitotic cohesin loading
GO:0010468
IEA
Gene Ontologyregulation of gene expression
GO:0010468
IEA
InterProregulation of gene expression
GO:0051321
IEA
GOA Databasemeiotic cell cycle
GO:0051301
IEA
GOA Databasecell division
GO:0007059
IEA
GOA Databasechromosome segregation
GO:0007049
IEA
GOA Databasecell cycle
GO:0071169
IBA
Gene Ontologyestablishment of protein localization to chromatin1
GO:1990414
IBA
Gene Ontologyreplication-born double-strand break repair via sister chromatid exchange1
GO:0007062
IMP
Gene Ontologysister chromatid cohesion2
GO:0051177
IMP
Gene Ontologymeiotic sister chromatid cohesion3
GO:0034508
IMP
Gene Ontologycentromere complex assembly3
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003682
IEA
GOA Databasechromatin binding
GO:0003682
IBA
Gene Ontologychromatin binding1
GO:0003682
IEA
InterProchromatin binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IPI
Gene Ontologyprotein binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
GOA Databasechromosome
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0000775
IEA
GOA Databasechromosome, centromeric region
GO:0090694
IBA
Gene OntologyScc2-Scc4 cohesin loading complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016024 Armadillo-type fold
IPR033031 Scc2/Nipped-B family
IPR024986 Sister chromatid cohesion C-terminal domain
IPR011989 Armadillo-like helical
IPR001965 Zinc finger, PHD-type
IPR026003 HEAT repeat associated with sister chromatid cohesion protein
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR011011 Zinc finger, FYVE/PHD-type
Mapman id Description
13.3.4.2.1.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2-SCC4 adherin complex.adherin (SCC2)