Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 4.0e-250 867.8 514 100.0
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 1.4e-231 806.2 518 92.5
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 4.5e-201 704.9 520 81.9
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 1.8e-197 693.0 515 78.1
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.0e-193 679.5 517 78.5
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 8.6e-192 674.1 498 81.9
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 4.9e-187 658.3 505 76.0
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 1.6e-182 643.3 518 77.8
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 3.3e-175 619.0 510 69.2
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 5.2e-173 611.7 522 68.4
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 2.0e-172 609.8 525 69.5
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 2.0e-172 609.8 521 73.5
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 3.4e-172 609.0 523 75.1
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 9.8e-172 607.4 541 68.6
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 4.9e-171 605.1 518 68.1
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.4e-170 603.6 523 74.8
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 5.4e-170 601.7 518 69.1
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 5.4e-170 601.7 519 68.2
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 2.1e-169 599.7 404 80.9
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 1.7e-168 596.7 511 66.1
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 5.1e-168 595.1 512 70.7
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 1.5e-167 593.6 528 67.8
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 3.3e-167 592.4 519 67.6
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 7.3e-167 591.3 519 70.7
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 7.3e-167 591.3 519 74.6
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 9.5e-167 590.9 521 71.0
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 1.2e-166 590.5 522 66.5
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 8.1e-166 587.8 519 67.2
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 7.6e-164 581.3 510 67.5
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 9.9e-164 580.9 511 69.3
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 9.9e-164 580.9 521 71.0
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 1.3e-163 580.5 521 70.8
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 2.9e-163 579.3 522 64.6
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 3.2e-162 575.9 516 67.2
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 4.6e-161 572.0 435 74.7
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 1.0e-160 570.9 520 65.6
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 1.7e-160 570.1 447 74.0
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 3.9e-160 568.9 403 76.9
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 8.6e-160 567.8 506 70.0
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 1.1e-159 567.4 509 65.0
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 1.6e-158 563.5 533 63.2
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 2.8e-158 562.8 516 64.5
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.8e-158 562.8 510 66.3
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 6.2e-158 561.6 480 69.6
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 1.1e-157 560.8 519 64.9
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 2.4e-157 559.7 524 68.1
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.1e-157 559.3 520 64.4
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 1.2e-156 557.4 403 75.7
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.2e-156 557.4 528 64.4
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 9.9e-156 554.3 521 63.9
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 3.8e-155 552.4 521 63.5
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 1.4e-154 550.4 439 72.7
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.4e-154 549.7 522 64.2
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 2.4e-154 549.7 403 74.7
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 1.0e-152 544.3 438 72.1
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 1.7e-152 543.5 529 65.2
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.7e-152 543.5 436 69.0
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 1.1e-151 540.8 502 62.7
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 1.5e-151 540.4 589 54.7
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 9.6e-151 537.7 503 64.2
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 2.1e-150 536.6 485 66.4
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 8.1e-150 534.6 502 64.5
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 4.0e-149 532.3 380 77.6
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 1.5e-148 530.4 496 63.7
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 9.9e-148 527.7 436 68.8
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 2.9e-147 526.2 436 68.8
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 5.4e-146 521.9 436 69.3
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 9.3e-146 521.2 516 58.1
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 9.3e-146 521.2 438 68.7
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 1.2e-145 520.8 519 63.4
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 1.6e-145 520.4 441 70.1
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 6.0e-145 518.5 527 64.1
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 1.7e-144 516.9 503 64.0
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 1.7e-144 516.9 526 64.8
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 3.0e-144 516.2 523 62.9
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 5.1e-144 515.4 435 69.0
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 2.5e-143 513.1 518 59.7
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 4.3e-143 512.3 399 72.9
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 4.8e-142 508.8 494 58.3
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 2.2e-139 500.0 516 61.6
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 2.4e-138 496.5 543 59.3
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 2.1e-137 493.4 507 61.3
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 6.7e-136 488.4 527 57.7
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 3.1e-133 479.6 411 69.3
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.9e-131 473.0 509 50.7
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 6.5e-131 471.9 421 62.2
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 8.4e-131 471.5 520 53.7
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 1.4e-130 470.7 526 56.5
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 3.0e-128 463.0 436 61.0
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 8.7e-128 461.5 375 71.5
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 8.2e-126 454.9 434 61.3
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.8e-125 453.8 515 50.1
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 4.1e-125 452.6 393 58.5
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 9.0e-125 451.4 540 51.1
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 1.5e-124 450.7 394 65.7
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.0e-124 450.3 386 65.3
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 5.8e-124 448.7 384 64.1
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 2.2e-123 446.8 508 53.9
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 8.4e-123 444.9 506 57.9
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 8.4e-123 444.9 406 64.3
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 1.9e-122 443.7 515 55.5
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 5.5e-122 442.2 384 65.1
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 1.6e-121 440.7 384 64.8
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 2.1e-121 440.3 386 64.8
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 2.1e-121 440.3 511 54.0
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 2.1e-121 440.3 384 65.1
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 3.5e-121 439.5 384 64.6
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 7.9e-121 438.3 511 55.6
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 7.9e-121 438.3 511 54.0
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 1.0e-120 438.0 514 54.9
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 1.5e-119 434.1 411 59.9
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 2.5e-114 416.8 444 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 2.2e-107 393.7 441 56.9
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 7.4e-103 378.6 354 65.0
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 4.1e-101 372.9 449 52.1
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.3e-99 367.9 456 51.5
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 5.2e-88 329.3 292 67.1
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.3e-86 324.7 185 83.8
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 2.8e-86 323.6 261 62.8
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 2.1e-81 307.4 399 50.1
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 1.6e-76 291.2 472 44.9
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 4.1e-61 240.0 466 34.5
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 5.8e-55 219.5 465 37.0
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 1.6e-49 201.4 216 50.5
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 6.8e-48 196.1 280 41.8
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 5.6e-42 176.4 409 31.1
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 2.4e-40 171.0 251 39.4
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 7.6e-23 112.8 514 24.5
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 6.4e-22 109.8 132 46.2
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 2.1e-17 94.7 83 56.6
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 8.1e-17 92.8 83 55.4
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 3.1e-16 90.9 83 55.4
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 2.7e-12 77.8 163 34.4
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 8.7e-11 72.8 162 32.7
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 1.5e-10 72.0 132 35.6
Oeu020857.1 Olea europaea HOM05D005639 ORTHO05D290761 4.3e-10 70.5 147 56.5
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 1.4e-08 65.5 119 34.5
Rhsim12G0161600 Rhododendron simsii HOM05D000453 ORTHO05D000387 2.4e-08 64.7 118 34.7
QL10p012364 Quercus lobata HOM05D000453 ORTHO05D000387 4.5e-07 60.5 118 34.7
Lj6P800T11 Lonicera japonica HOM05D000453 ORTHO05D000387 1.0e-06 59.3 121 33.9
arahy.Tifrunner.gnm1.ann1.4KG7L9 Arachis hypogaea HOM05D000453 ORTHO05D000387 1.7e-06 58.5 121 31.4
PSO478G1867 Papaver somniferum HOM05D000453 ORTHO05D000387 2.2e-06 58.2 142 28.2
ATR0021G051 Amborella trichopoda HOM05D002332 ORTHO05D002509 6.5e-06 56.6 112 30.4


User provided reference genes

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