Gene: AT4G05410

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G05410
  • Transcript Identifier AT4G05410.1
  • Gene Type Coding gene
  • Location Chr4 : 2743229-2745521 : negative

Gene Family Information

  • ID HOM05D005639
  • #Genes/#Species 137/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G05410.1
  • symbol YAO
  • full_name YAOZHE
  • uniprot Q9M0V4

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description YAOZHE (YAO); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: acceptance of pollen, mitochondrial fission, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleolus, anaphase-promoting complex, small nucleolar ribonucleoprotein complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G21130.1); Has 47131 Blast hits to 24802 proteins in 761 species: Archae - 50; Bacteria - 6358; Metazoa - 18156; Fungi - 10195; Plants - 5539; Viruses - 94; Other Eukaryotes - 6739 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IEA
InterProrRNA processing
GO:0060321
IMP
Gene Ontologyacceptance of pollen1
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy1
GO:0009553
IMP
Gene Ontologyembryo sac development1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034511
IEA
Gene OntologyU3 snoRNA binding
GO:0034511
IEA
InterProU3 snoRNA binding
GO:0005515
IEA
InterProprotein binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0030515
IBA
Gene OntologysnoRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032040
IBA
Gene Ontologysmall-subunit processome2
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA, HDA
Gene Ontologynucleolus1 3
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR039241 Ribosomal RNA-processing protein Rrp9-like
IPR020472 G-protein beta WD-40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR001680 WD40 repeat
Mapman id Description
17.1.3.2.1.8 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (Rrp9/YAO1)