Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 5.4e-184 647.5 323 100.0
unitig_736.g22623 Utricularia gibba HOM05D002815 ORTHO05D003409 1.3e-20 104.8 61 82.0
AUR62003313 Chenopodium quinoa HOM05D002815 ORTHO05D003409 1.9e-16 90.9 74 67.6
Actinidia12206 Actinidia chinensis HOM05D002815 ORTHO05D003409 3.3e-16 90.1 59 74.6
MBI02_g13021_MAGBIO Magnolia biondii HOM05D002815 ORTHO05D003409 4.3e-16 89.7 60 73.3
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 5.7e-16 89.4 69 59.4
Oeu030686.2 Olea europaea HOM05D002815 ORTHO05D003409 1.6e-15 87.8 59 72.9
EL10Ac6g14745 Beta vulgaris HOM05D002815 ORTHO05D003409 2.8e-15 87.0 75 64.0
Rhsim08G0007600 Rhododendron simsii HOM05D002815 ORTHO05D003409 2.8e-15 87.0 81 58.0
Hma1.2p1_0375F.1_g138610 Hydrangea macrophylla HOM05D002815 ORTHO05D025745 3.7e-15 86.7 59 74.6
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 2.4e-14 84.0 67 58.2
Actinidia28889 Actinidia chinensis HOM05D002815 ORTHO05D003409 3.1e-14 83.6 59 69.5
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 4.1e-14 83.2 71 57.7
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 5.3e-14 82.8 71 57.7
PGR102G0114 Punica granatum HOM05D002815 ORTHO05D003409 5.3e-14 82.8 70 61.4
TWI53G1894 Tripterygium wilfordii HOM05D002815 ORTHO05D003409 6.9e-14 82.4 68 64.7
MD15G1083500 Malus domestica HOM05D002815 ORTHO05D003409 2.0e-13 80.9 59 66.1
Lj4C878T7 Lonicera japonica HOM05D002815 ORTHO05D003409 2.6e-13 80.5 74 60.8
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 2.6e-13 80.5 69 52.2
SEGI_12429 Sequoiadendron giganteum HOM05D002815 ORTHO05D003409 2.6e-13 80.5 58 65.5
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 3.4e-13 80.1 67 55.2
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 4.5e-13 79.7 71 49.3
CDE02G3240 Ceratophyllum demersum HOM05D002815 ORTHO05D003409 5.9e-13 79.3 73 54.8
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 1.0e-12 78.6 71 52.1
Oeu028529.1 Olea europaea HOM05D002815 ORTHO05D003409 1.7e-12 77.8 59 66.1
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.9e-12 77.0 71 50.7
Aqoxy2G03268 Aquilegia oxysepala HOM05D002815 ORTHO05D003409 3.8e-12 76.6 58 63.8
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 3.8e-12 76.6 67 52.2
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 3.8e-12 76.6 58 58.6
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 3.8e-12 76.6 58 58.6
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 6.5e-12 75.9 65 49.2
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 6.5e-12 75.9 67 53.7
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 1.1e-11 75.1 67 53.7
Sc07g0001510 Simmondsia chinensis HOM05D002815 ORTHO05D003409 1.1e-11 75.1 59 64.4
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 1.1e-11 75.1 67 52.2
Aqoxy2G03245 Aquilegia oxysepala HOM05D002815 ORTHO05D003409 1.4e-11 74.7 73 54.8
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 1.9e-11 74.3 71 52.1
HPP92_018242 Vanilla planifolia HOM05D002815 ORTHO05D003409 1.9e-11 74.3 59 59.3
Ah.02g124410 Amaranthus hybridus HOM05D002815 ORTHO05D003409 2.5e-11 73.9 77 54.5
Prupe.1G436000 Prunus persica HOM05D002815 ORTHO05D003409 2.5e-11 73.9 59 59.3
Ciclev10025987m.g Citrus clementina HOM05D002815 ORTHO05D003409 3.2e-11 73.6 73 54.8
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 3.2e-11 73.6 62 54.8
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 3.2e-11 73.6 58 56.9
TPR.G2180 Trifolium pratense HOM05D002815 ORTHO05D003409 3.2e-11 73.6 59 59.3
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 5.5e-11 72.8 67 50.7
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 9.4e-11 72.0 67 50.7
BcaB01g05552 Brassica carinata HOM05D002815 ORTHO05D003409 1.2e-10 71.6 59 55.9
C03p04810 Brassica napus HOM05D002815 ORTHO05D003409 1.2e-10 71.6 59 55.9
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 1.2e-10 71.6 67 50.7
Glyma.20G028200 Glycine max HOM05D002815 ORTHO05D003409 1.6e-10 71.2 75 57.3
Cpa.g.sc196.4 Carica papaya HOM05D002815 ORTHO05D003409 2.1e-10 70.9 59 59.3
A03p04360 Brassica napus HOM05D002815 ORTHO05D003409 2.7e-10 70.5 59 54.2
BraA03t09780Z Brassica rapa HOM05D002815 ORTHO05D003409 2.7e-10 70.5 59 54.2
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 3.6e-10 70.1 67 46.3
Cc02_g32850 Coffea canephora HOM05D002815 ORTHO05D003409 3.6e-10 70.1 56 57.1
Nn5g28923 Nelumbo nucifera HOM05D002815 ORTHO05D003409 3.6e-10 70.1 68 55.9
Haze_25031 Corylus avellana HOM05D002815 ORTHO05D003409 4.6e-10 69.7 59 59.3
HanXRQChr09g0254771 Helianthus annuus HOM05D002815 ORTHO05D003409 4.6e-10 69.7 68 54.4
Mapoly0126s0032 Marchantia polymorpha HOM05D002815 ORTHO05D003409 4.6e-10 69.7 58 62.1
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 4.6e-10 69.7 69 44.9
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 6.1e-10 69.3 67 49.3
CiPaw.03G135000 Carya illinoinensis HOM05D002815 ORTHO05D003409 6.1e-10 69.3 68 54.4
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 7.9e-10 68.9 67 52.2
Aqoxy5G01953 Aquilegia oxysepala HOM05D002815 ORTHO05D003409 1.0e-09 68.6 59 55.9
Ca_17698_v3 Cicer arietinum L. HOM05D002815 ORTHO05D003409 1.0e-09 68.6 59 57.6
CsaV3_6G045970 Cucumis sativus L. HOM05D002815 ORTHO05D003409 1.0e-09 68.6 59 61.0
Sed0002780 Sechium edule HOM05D002815 ORTHO05D003409 1.4e-09 68.2 73 52.1
vmacro22670 Vaccinium macrocarpon HOM05D002815 ORTHO05D003409 1.4e-09 68.2 59 59.3
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 1.8e-09 67.8 67 47.8
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 1.8e-09 67.8 67 49.3
Zm00001eb425460 Zea mays HOM05D002815 ORTHO05D003409 1.8e-09 67.8 74 48.6
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.3e-09 67.4 67 47.8
CiPaw.04G092700 Carya illinoinensis HOM05D002815 ORTHO05D003409 3.0e-09 67.0 68 54.4
Cc07_g16040 Coffea canephora HOM05D002815 ORTHO05D003409 3.0e-09 67.0 74 50.0
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 3.0e-09 67.0 67 47.8
vmacro18628 Vaccinium macrocarpon HOM05D002815 ORTHO05D003409 3.0e-09 67.0 59 57.6
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.9e-09 66.6 67 49.3
SMO367G1178 Selaginella moellendorffii HOM05D002815 ORTHO05D003409 3.9e-09 66.6 57 59.6
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 3.9e-09 66.6 67 46.3
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 5.1e-09 66.2 67 47.8
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 6.7e-09 65.9 67 46.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 6.7e-09 65.9 67 46.3
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 6.7e-09 65.9 65 47.7
Sabra07G0068800 Salix brachista HOM05D002815 ORTHO05D003409 6.7e-09 65.9 68 52.9
AUR62016270 Chenopodium quinoa HOM05D002815 ORTHO05D003409 8.8e-09 65.5 74 52.7
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 8.8e-09 65.5 67 46.3
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.8e-09 65.5 64 48.4
Hma1.2p1_0375F.1_g138590 Hydrangea macrophylla HOM05D002815 ORTHO05D003409 8.8e-09 65.5 73 50.7
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 1.9e-08 64.3 69 43.5
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 1.9e-08 64.3 67 44.8
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 1.9e-08 64.3 67 44.8
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.5e-08 63.9 64 46.9
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.5e-08 63.9 64 46.9
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.5e-08 63.9 64 46.9
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 2.5e-08 63.9 67 46.3
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 2.5e-08 63.9 67 44.8
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 2.5e-08 63.9 67 43.3
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 3.3e-08 63.5 67 44.8
Lj1g0001740 Lotus japonicus HOM05D002815 ORTHO05D003409 3.3e-08 63.5 73 47.9
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 3.3e-08 63.5 67 47.8
SEGI_12052 Sequoiadendron giganteum HOM05D002815 ORTHO05D003409 3.3e-08 63.5 48 64.6
ECA246G4254 Erigeron canadensis HOM05D001560 ORTHO05D003613 4.3e-08 63.2 63 52.4
QL06p032363 Quercus lobata HOM05D002815 ORTHO05D003409 4.3e-08 63.2 59 54.2
ClCG01G019280 Citrullus lanatus HOM05D002815 ORTHO05D003409 5.7e-08 62.8 141 32.6
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 5.7e-08 62.8 67 44.8
TAR625G0199 Trochodendron aralioides HOM05D002815 ORTHO05D003409 5.7e-08 62.8 68 51.5
Gohir.A12G092900 Gossypium hirsutum HOM05D002815 ORTHO05D003409 7.4e-08 62.4 95 43.2
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 7.4e-08 62.4 67 44.8
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 9.7e-08 62.0 65 43.1
arahy.Tifrunner.gnm1.ann1.32ZMRL Arachis hypogaea HOM05D002815 ORTHO05D003409 9.7e-08 62.0 58 53.4
arahy.Tifrunner.gnm1.ann1.5BMY1P Arachis hypogaea HOM05D002815 ORTHO05D003409 9.7e-08 62.0 58 53.4
Carub.0008s2574 Capsella rubella HOM05D002815 ORTHO05D003409 9.7e-08 62.0 59 55.9
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 9.7e-08 62.0 67 41.8
BcaB05g21510 Brassica carinata HOM05D002815 ORTHO05D003409 1.3e-07 61.6 56 53.6
Lalb_Chr07g0184831 Lupinus albus HOM05D002815 ORTHO05D003409 1.3e-07 61.6 73 47.9
TWI77G0240 Tripterygium wilfordii HOM05D002815 ORTHO05D003409 1.3e-07 61.6 63 52.4
Zm00001eb078940 Zea mays HOM05D002815 ORTHO05D003409 1.3e-07 61.6 44 59.1
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 1.7e-07 61.2 60 46.7
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 1.7e-07 61.2 67 46.3
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 1.7e-07 61.2 67 46.3
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 3.7e-07 60.1 67 44.8
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 3.7e-07 60.1 67 43.3
AT5G64910 Arabidopsis thaliana HOM05D002815 ORTHO05D003409 4.8e-07 59.7 57 54.4
arahy.Tifrunner.gnm1.ann1.438YJL Arachis hypogaea HOM05D002815 ORTHO05D003409 4.8e-07 59.7 58 51.7
MBI14_g36017_MAGBIO Magnolia biondii HOM05D002815 ORTHO05D025745 4.8e-07 59.7 44 68.2
QL93p0275_0003 Quercus lobata HOM05D002815 ORTHO05D003409 4.8e-07 59.7 60 51.7
Thhalv10013514m.g Eutrema salsugineum HOM05D002815 ORTHO05D003409 8.2e-07 58.9 59 49.2
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 8.2e-07 58.9 67 40.3
AL8G42410 Arabidopsis lyrata HOM05D002815 ORTHO05D003409 1.1e-06 58.5 72 47.2
MD15G1334000 Malus domestica HOM05D002815 ORTHO05D003409 1.1e-06 58.5 56 55.4
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.4e-06 58.2 63 44.4
Glyma.04G220100 Glycine max HOM05D002815 ORTHO05D003409 1.4e-06 58.2 67 47.8
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 1.4e-06 58.2 67 40.3
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 1.4e-06 58.2 68 41.2
Sc03g0004290 Simmondsia chinensis HOM05D002815 ORTHO05D003409 1.4e-06 58.2 59 52.5
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 1.4e-06 58.2 67 40.3
ECA232G4479 Erigeron canadensis HOM05D002815 ORTHO05D003409 1.8e-06 57.8 68 47.1
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 1.8e-06 57.8 67 43.3
Atru.chr4.374 Acer truncatum HOM05D002815 ORTHO05D003409 2.4e-06 57.4 67 47.8
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 2.4e-06 57.4 74 41.9
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 2.4e-06 57.4 65 44.6
arahy.Tifrunner.gnm1.ann1.HMT8RT Arachis hypogaea HOM05D002815 ORTHO05D003409 3.1e-06 57.0 68 45.6
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 3.1e-06 57.0 67 35.8
arahy.Tifrunner.gnm1.ann1.U2FY0G Arachis hypogaea HOM05D002815 ORTHO05D003409 3.1e-06 57.0 68 45.6
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 3.1e-06 57.0 67 35.8
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 3.1e-06 57.0 71 42.3
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 3.1e-06 57.0 64 42.2
Lj1g0003133 Lotus japonicus HOM05D002815 ORTHO05D003409 3.1e-06 57.0 58 51.7
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 3.1e-06 57.0 67 41.8
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 3.1e-06 57.0 67 41.8
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 3.1e-06 57.0 60 46.7
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 3.1e-06 57.0 72 43.1
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 4.1e-06 56.6 64 45.3
BcaB05g22209 Brassica carinata HOM05D002815 ORTHO05D003409 5.3e-06 56.2 50 54.0
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 5.3e-06 56.2 67 38.8
Pp3c9_21820 Physcomitrium patens HOM05D002815 ORTHO05D003409 5.3e-06 56.2 59 49.2
AL6G20450 Arabidopsis lyrata HOM05D002815 ORTHO05D003409 6.9e-06 55.8 74 41.9
arahy.Tifrunner.gnm1.ann1.RGT2W8 Arachis hypogaea HOM05D002815 ORTHO05D003409 6.9e-06 55.8 58 50.0
Lsat_1_v5_gn_4_140960 Lactuca sativa HOM05D002815 ORTHO05D003409 6.9e-06 55.8 77 42.9
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 6.9e-06 55.8 67 38.8
RcHm_v2.0_Chr3g0452131 Rosa chinensis HOM05D002815 ORTHO05D003409 6.9e-06 55.8 59 50.8
Hund03546 Selenicereus undatus HOM05D002815 ORTHO05D003409 6.9e-06 55.8 74 44.6
Sed0026641 Sechium edule HOM05D002815 ORTHO05D025745 9.1e-06 55.5 65 52.3


User provided reference genes

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