Gene: PGSC0003DMG400012951
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400012951
- Transcript Identifier PGSC0003DMT400033711
- Gene Type Coding gene
- Location ST4.03ch04 : 53831824-53838261 : positive
Gene Family Information
- ID HOM05D004874
- #Genes/#Species 152/95
- Phylogenetic origin
- ID ORTHO05D006796
- #Genes/#Species 138/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pacid 37473151
- id PGSC0003DMG400012951.v4.03
- uniprot M1AZJ1
Descriptions
- Description E3 ubiquitin-protein ligase RKP
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016567 | IEA | GOA Database | protein ubiquitination | |
| GO:0016567 | IEA | InterPro | protein ubiquitination | |
| GO:0030163 | ISO | PLAZA Integrative Orthology | protein catabolic process | AT2G22010 |
| GO:2000060 | ISO | PLAZA Integrative Orthology | positive regulation of ubiquitin-dependent protein catabolic process | AT2G22010 |
| GO:0009615 | IEA | GOA Database | response to virus | |
| GO:0051726 | IEA | GOA Database | regulation of cell cycle | |
| GO:0051603 | IBA IEA | GOA Database | proteolysis involved in cellular protein catabolic process | |
| GO:0006511 | IEA | GOA Database | ubiquitin-dependent protein catabolic process | |
| GO:0006511 | IEA | InterPro | ubiquitin-dependent protein catabolic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0061630 | ISO | PLAZA Integrative Orthology | ubiquitin protein ligase activity | AT2G22010 |
| GO:0004842 | IBA IEA | GOA Database | ubiquitin-protein transferase activity | |
| GO:0004842 | IEA | InterPro | ubiquitin-protein transferase activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0034450 | IEA | GOA Database | ubiquitin-ubiquitin ligase activity | |
| GO:0034450 | IEA | InterPro | ubiquitin-ubiquitin ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IBA | GOA Database | cytoplasm | |
| GO:0000151 | IEA | GOA Database | ubiquitin ligase complex | |
| GO:0000151 | IEA | InterPro | ubiquitin ligase complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003877 | SPRY domain |
| IPR019474 | Ubiquitin conjugation factor E4, core |
| IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily |
| IPR045129 | E3 ubiquitin-protein ligase RNF123/RSPRY1-like |
| IPR043136 | B30.2/SPRY domain superfamily |
| IPR035773 | Ring finger protein 123, SPRY domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |