Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 9.5e-86 320.1 156 100.0
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 6.5e-26 121.3 94 68.1
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 8.5e-26 120.9 93 64.5
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 8.5e-26 120.9 93 63.4
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 1.1e-25 120.6 103 59.2
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.4e-25 120.2 93 64.5
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 1.9e-25 119.8 93 64.5
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 1.9e-25 119.8 119 54.6
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.5e-25 119.4 93 63.4
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 2.5e-25 119.4 93 63.4
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 2.5e-25 119.4 116 55.2
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 2.5e-25 119.4 93 62.4
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 3.2e-25 119.0 93 63.4
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 3.2e-25 119.0 93 64.5
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 4.2e-25 118.6 93 64.5
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 4.2e-25 118.6 93 63.4
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 4.2e-25 118.6 93 63.4
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 4.2e-25 118.6 93 63.4
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 4.2e-25 118.6 93 64.5
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 4.2e-25 118.6 93 64.5
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 4.2e-25 118.6 93 64.5
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 4.2e-25 118.6 93 64.5
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 4.2e-25 118.6 93 62.4
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 5.5e-25 118.2 93 62.4
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 7.2e-25 117.9 93 61.3
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 7.2e-25 117.9 93 61.3
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 7.2e-25 117.9 93 61.3
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 7.2e-25 117.9 93 61.3
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 7.2e-25 117.9 93 60.2
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 7.2e-25 117.9 93 62.4
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 7.2e-25 117.9 93 63.4
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 62.4
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 62.4
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 62.4
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 62.4
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 63.4
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 63.4
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 62.4
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 62.4
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 61.3
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 62.4
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 62.4
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 9.4e-25 117.5 93 62.4
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 1.2e-24 117.1 93 61.3
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 1.2e-24 117.1 93 60.2
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 1.2e-24 117.1 93 62.4
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 1.2e-24 117.1 93 62.4
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 1.2e-24 117.1 93 62.4
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 1.2e-24 117.1 93 63.4
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 1.2e-24 117.1 93 62.4
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 1.2e-24 117.1 93 62.4
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 1.6e-24 116.7 93 63.4
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 2.1e-24 116.3 93 60.2
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 2.1e-24 116.3 93 62.4
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 2.1e-24 116.3 93 62.4
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 2.1e-24 116.3 93 62.4
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 2.1e-24 116.3 93 62.4
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 2.1e-24 116.3 93 62.4
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 2.7e-24 115.9 93 61.3
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 2.7e-24 115.9 93 62.4
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.7e-24 115.9 94 64.9
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 2.7e-24 115.9 93 61.3
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 2.7e-24 115.9 93 61.3
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 2.7e-24 115.9 93 61.3
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 2.7e-24 115.9 94 64.9
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 2.7e-24 115.9 93 62.4
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 2.7e-24 115.9 93 62.4
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 3.6e-24 115.5 93 61.3
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 3.6e-24 115.5 93 60.2
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 3.6e-24 115.5 93 60.2
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 3.6e-24 115.5 93 59.1
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 3.6e-24 115.5 93 62.4
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 3.6e-24 115.5 93 61.3
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 3.6e-24 115.5 93 60.2
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 3.6e-24 115.5 104 56.7
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 3.6e-24 115.5 93 61.3
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 3.6e-24 115.5 93 60.2
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 3.6e-24 115.5 93 61.3
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 4.7e-24 115.2 93 62.4
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 4.7e-24 115.2 93 60.2
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 4.7e-24 115.2 93 61.3
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 4.7e-24 115.2 93 60.2
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 4.7e-24 115.2 93 60.2
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 4.7e-24 115.2 93 60.2
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 4.7e-24 115.2 93 60.2
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 4.7e-24 115.2 93 60.2
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 4.7e-24 115.2 93 60.2
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 4.7e-24 115.2 93 60.2
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 4.7e-24 115.2 93 61.3
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 4.7e-24 115.2 93 62.4
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 4.7e-24 115.2 93 61.3
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 4.7e-24 115.2 93 62.4
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 4.7e-24 115.2 93 60.2
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 6.1e-24 114.8 94 64.9
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 6.1e-24 114.8 93 61.3
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 7.9e-24 114.4 93 61.3
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 7.9e-24 114.4 93 61.3
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 7.9e-24 114.4 93 60.2
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 7.9e-24 114.4 93 61.3
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.0e-23 114.0 93 59.1
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 1.0e-23 114.0 93 60.2
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 1.0e-23 114.0 93 62.4
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 1.0e-23 114.0 93 59.1
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 1.0e-23 114.0 93 60.2
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 1.4e-23 113.6 93 59.1
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 1.4e-23 113.6 93 59.1
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 1.4e-23 113.6 93 61.3
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 1.4e-23 113.6 93 59.1
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 1.8e-23 113.2 93 60.2
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.8e-23 113.2 93 61.3
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 2.3e-23 112.8 93 60.2
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 2.3e-23 112.8 93 59.1
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.3e-23 112.8 94 63.8
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.3e-23 112.8 93 58.1
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 3.0e-23 112.5 93 58.1
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 3.0e-23 112.5 93 58.1
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 3.0e-23 112.5 93 58.1
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 3.0e-23 112.5 93 58.1
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 3.0e-23 112.5 93 60.2
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 3.9e-23 112.1 93 60.2
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 6.7e-23 111.3 103 57.3
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 6.7e-23 111.3 93 60.2
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 1.1e-22 110.5 93 58.1
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 2.6e-22 109.4 93 59.1
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 3.3e-22 109.0 88 60.2
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 1.3e-21 107.1 93 57.0
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.3e-21 107.1 109 53.2
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 4.8e-21 105.1 91 59.3
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 9.1e-20 100.9 120 50.8
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 1.2e-19 100.5 85 58.8
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 3.5e-19 99.0 85 56.5
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.3e-18 97.1 93 51.6
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 1.3e-18 97.1 93 48.4
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 2.2e-18 96.3 93 47.3
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 2.2e-18 96.3 93 48.4
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 2.2e-18 96.3 93 53.8
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 2.9e-18 95.9 93 48.4
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 2.9e-18 95.9 93 47.3
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 8.5e-18 94.4 93 52.7
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 1.1e-17 94.0 93 47.3
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 2.7e-16 89.4 151 38.4
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 3.6e-16 89.0 92 48.9
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 1.8e-15 86.7 103 43.7
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 3.1e-12 75.9 72 56.9
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 9.1e-12 74.3 62 59.7
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 1.2e-11 73.9 92 41.3
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 1.6e-11 73.6 64 62.5
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 2.0e-11 73.2 84 40.5
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 1.7e-10 70.1 80 40.0
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 1.7e-10 70.1 101 36.6
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 1.7e-10 70.1 55 69.1
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 5.0e-10 68.6 55 67.3
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 5.0e-10 68.6 55 67.3
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 2.5e-09 66.2 77 48.1
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 2.5e-09 66.2 55 63.6
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 5.2e-07 58.5 94 33.0
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 5.2e-07 58.5 45 64.4


User provided reference genes

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