Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001366', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '457', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p15810' => 'bna', 'A02p12370' => 'bna', 'A03p55290' => 'bna', 'A06p20360' => 'bna', 'A08p03570' => 'bna', 'A08p21460' => 'bna', 'A08p33790' => 'bna', 'A09p64660' => 'bna', 'Aa31LG1G4070' => 'aar', 'Aa31LG4G9540' => 'aar', 'Aa31LG4G9550' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3950' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5579' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2092' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2093' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.756' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3722' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1269' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1797' => 'aag', 'Actinidia03178' => 'ach', 'Actinidia14321' => 'ach', 'Actinidia15071' => 'ach', 'Actinidia19254' => 'ach', 'Actinidia19617' => 'ach', 'Actinidia29656' => 'ach', 'Actinidia37408' => 'ach', 'Actinidia37409' => 'ach', 'Actinidia37410' => 'ach', 'Actinidia37411' => 'ach', 'Ah.01g003970' => 'amhyb', 'Ah.02g130140' => 'amhyb', 'Ah.03g133220' => 'amhyb', 'AL1G21690' => 'aly', 'AL7G28770' => 'aly', 'AL7G28780' => 'aly', 'Aqoxy2G03242' => 'aox', 'Aqoxy3G02840' => 'aox', 'Aqoxy6G00666' => 'aox', 'Aqoxy6G00668_Aqoxy6G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52KDTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8785AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90XW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRNC3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM29ET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU70H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2L19B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8Y0HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T41BVH' => 'arhy', 'AT1G10760' => 'ath', 'AT4G24440' => 'ath', 'AT4G24450' => 'ath', 'ATR0691G175' => 'atr', 'ATR0767G073' => 'atr', 'ATR1152G017' => 'atr', 'Atru.chr11.2087' => 'acertr', 'Atru.chr11.619' => 'acertr', 'Atru.chr13.973' => 'acertr', 'Atru.chr13.974' => 'acertr', 'AUR62005429' => 'cqu', 'AUR62014090' => 'cqu', 'AUR62014838' => 'cqu', 'AUR62017035' => 'cqu', 'BcaB08g37373' => 'bca', 'BcaC04g23602' => 'bca', 'BcaC06g32884' => 'bca', 'BcaC06g34403' => 'bca', 'BcaC07g38588' => 'bca', 'BcaC07g38627' => 'bca', 'BcaC08g43388' => 'bca', 'BcaC09g50867' => 'bca', 'BcaC09g50868' => 'bca', 'BcaNung05637' => 'bca', 'BcaNung06799' => 'bca', 'BolC1t01904H' => 'bol', 'BolC3t20986H' => 'bol', 'BolC3t20989H' => 'bol', 'BolC6t35845H' => 'bol', 'BolC7t43445H' => 'bol', 'BolC7t45851H' => 'bol', 'BolC8t48576H' => 'bol', 'BolC8t49029H' => 'bol', 'BolC8t52392H' => 'bol', 'BolC9t58777H' => 'bol', 'BraA01t01516Z' => 'bra', 'BraA03t14588Z' => 'bra', 'BraA06t23226Z' => 'bra', 'BraA07t27914Z' => 'bra', 'BraA07t30432Z' => 'bra', 'BraA08t34095Z' => 'bra', 'BraA08t35295Z' => 'bra', 'BraA09t41826Z' => 'bra', 'C01p19760' => 'bna', 'C01p31290' => 'bna', 'C01p47940' => 'bna', 'C04p15580' => 'bna', 'C06p07570' => 'bna', 'C07p29060' => 'bna', 'C07p53590' => 'bna', 'C08p13950' => 'bna', 'C08p48530' => 'bna', 'C09p59380' => 'bna', 'CAN.G1104.8' => 'can', 'CAN.G447.9' => 'can', 'CANSAT01G0055' => 'cansat', 'CANSAT25G2801' => 'cansat', 'CANSAT64G0829' => 'cansat', 'CARHR010980' => 'chi', 'CARHR231830' => 'chi', 'CARHR231840' => 'chi', 'Carub.0001s1031' => 'cru', 'Carub.0007s1662' => 'cru', 'Carub.0007s1663' => 'cru', 'Ca_08744_v3' => 'car', 'Ca_22500_v3' => 'car', 'CBR_g12420' => 'cbr', 'CBR_g39013' => 'cbr', 'Cc10_g08370' => 'ccan', 'Cc11_g15490' => 'ccan', 'CDE04G1797' => 'cde', 'CDE04G2323' => 'cde', 'CDE04G3375' => 'cde', 'CDE04G3560' => 'cde', 'CDE06G0295' => 'cde', 'Cfa009191' => 'cfa', 'Ciclev10002917m.g' => 'ccl', 'Ciclev10017434m.g' => 'ccl', 'Ciclev10030499m.g' => 'ccl', 'CiPaw.05G184800' => 'cil', 'CiPaw.07G162800' => 'cil', 'CiPaw.07G162900' => 'cil', 'CiPaw.07G163000' => 'cil', 'CiPaw.08G057200' => 'cil', 'ClCG05G025580' => 'cla', 'ClCG11G014700' => 'cla', 'COL.COLO4_24234' => 'col', 'COL.COLO4_35285' => 'col', 'COL.COLO4_35286' => 'col', 'Cpa.g.sc21.43' => 'cpa', 'Cpa.g.sc69.90' => 'cpa', 'Cre07.g319300' => 'cre', 'Cre07.g319340' => 'cre', 'Cre07.g332300' => 'cre', 'Cre07.g333252' => 'cre', 'Cre08.g363874' => 'cre', 'Cre10.g424150' => 'cre', 'CsaV3_2G033350' => 'csa', 'CsaV3_2G033370' => 'csa', 'CsaV3_5G031320' => 'csa', 'CSS0001204' => 'camsi', 'CSS0005618' => 'camsi', 'CSS0021224' => 'camsi', 'CSS0026904' => 'camsi', 'CSS0027855' => 'camsi', 'CSS0031876' => 'camsi', 'CSS0046721' => 'camsi', 'CSS0046983' => 'camsi', 'CSS0048442' => 'camsi', 'DCAR_006444' => 'dca', 'DCAR_007066' => 'dca', 'DCAR_007067' => 'dca', 'DCAR_029738' => 'dca', 'DCAR_031129' => 'dca', 'Dinv15253' => 'din', 'Dinv24813' => 'din', 'Dinv42590' => 'din', 'Dinv42591' => 'din', 'Duzib041G0019' => 'dzi', 'Duzib041G0627' => 'dzi', 'Duzib116G0949' => 'dzi', 'Duzib268G0758' => 'dzi', 'ECA233G2601' => 'eca', 'ECA234G4650' => 'eca', 'ECA240G3991' => 'eca', 'ECA246G1742' => 'eca', 'EL10Ac6g13726' => 'bvu', 'EL10Ac8g20405' => 'bvu', 'EL10Ac9g20840' => 'bvu', 'Eucgr.F00436' => 'egr', 'Eucgr.H02531' => 'egr', 'FAN04G2369' => 'fan', 'FAN04G2482' => 'fan', 'FAN07G2766' => 'fan', 'FAN12G2701' => 'fan', 'FAN12G3618' => 'fan', 'FAN17G2901' => 'fan', 'FAN18G2982' => 'fan', 'FAN22G0388' => 'fan', 'FvH4_4g25800' => 'fve', 'FvH4_5g34180' => 'fve', 'FvH4_5g34191' => 'fve', 'FvH4_5g34192' => 'fve', 'FvH4_5g34193' => 'fve', 'Glyma.02G216100' => 'gma', 'Glyma.04G096500' => 'gma', 'Glyma.06G098200' => 'gma', 'Glyma.08G283700' => 'gma', 'Glyma.14G183100' => 'gma', 'Glyma.18G142500' => 'gma', 'Gohir.A01G159900' => 'ghi', 'Gohir.A01G159950' => 'ghi', 'Gohir.A05G216400' => 'ghi', 'Gohir.A05G216500' => 'ghi', 'Gohir.A05G264200' => 'ghi', 'Gohir.A12G144350' => 'ghi', 'Gohir.A12G144400' => 'ghi', 'Gohir.D01G150200' => 'ghi', 'Gohir.D05G220900' => 'ghi', 'Gohir.D05G221000' => 'ghi', 'Gohir.D05G266700' => 'ghi', 'Gohir.D12G148950' => 'ghi', 'Gohir.D12G149000' => 'ghi', 'Gorai.002G186200' => 'gra', 'Gorai.008G160400' => 'gra', 'Gorai.009G228000' => 'gra', 'Gorai.009G228100' => 'gra', 'Gorai.009G278800' => 'gra', 'GSVIVG01009213001' => 'vvi', 'GSVIVG01013806001' => 'vvi', 'HanXRQChr03g0063191' => 'han', 'HanXRQChr03g0093361' => 'han', 'HanXRQChr05g0143271' => 'han', 'HanXRQChr09g0264681' => 'han', 'HanXRQChr10g0277741' => 'han', 'HanXRQChr10g0277751' => 'han', 'HanXRQChr11g0353851' => 'han', 'HanXRQChr12g0371851' => 'han', 'HanXRQChr12g0384161' => 'han', 'HanXRQChr17g0547611' => 'han', 'HanXRQChr17g0547621' => 'han', 'Haze_12225' => 'cav', 'Haze_22489' => 'cav', 'Haze_27711' => 'cav', 'Hma1.2p1_0044F.1_g026380' => 'hma', 'Hma1.2p1_0125F.1_g058680' => 'hma', 'Hma1.2p1_0125F.1_g058690' => 'hma', 'Hma1.2p1_0223F.1_g094185' => 'hma', 'Hma1.2p1_0344F.1_g131080' => 'hma', 'Hma1.2p1_1861F.1_g305660' => 'hma', 'HPP92_003084' => 'vpl', 'HPP92_010288' => 'vpl', 'Hund01464' => 'sun', 'Hund06013' => 'sun', 'Hund07854' => 'sun', 'Hund18026' => 'sun', 'Hund25378' => 'sun', 'Hund25379' => 'sun', 'Lalb_Chr08g0242611' => 'lal', 'Lalb_Chr09g0334851' => 'lal', 'Lalb_Chr09g0334861' => 'lal', 'Lalb_Chr09g0334871' => 'lal', 'Lalb_Chr09g0334881' => 'lal', 'Lalb_Chr11g0064851' => 'lal', 'Lalb_Chr16g0392241' => 'lal', 'Lalb_Chr23g0269931' => 'lal', 'Lalb_Chr23g0269941' => 'lal', 'Lj4A85G30' => 'lonja', 'Lj4A85G31' => 'lonja', 'Lj4A85G32' => 'lonja', 'Lj4g0012667' => 'lja', 'Lj6A809T49' => 'lonja', 'Lj6C809G13' => 'lonja', 'LjContig00408g0006754' => 'lja', 'Lsat_1_v5_gn_4_160220' => 'lsa', 'Lsat_1_v5_gn_4_4920' => 'lsa', 'Lsat_1_v5_gn_4_60280' => 'lsa', 'Lsat_1_v5_gn_6_107360' => 'lsa', 'Lsat_1_v5_gn_7_43741' => 'lsa', 'Lsat_1_v5_gn_8_153980' => 'lsa', 'Manes.05G189000' => 'mes', 'Manes.13G026800' => 'mes', 'Manes.18G057000' => 'mes', 'Mapoly0012s0108' => 'mpo', 'Mapoly0038s0029' => 'mpo', 'Mapoly0046s0022' => 'mpo', 'Mapoly0046s0023' => 'mpo', 'Mapoly0067s0078' => 'mpo', 'MBI02_g34989_MAGBIO' => 'mbi', 'MBI05_g39009_MAGBIO' => 'mbi', 'MBI15_g14939_MAGBIO' => 'mbi', 'MBI16_g14597_MAGBIO' => 'mbi', 'MBI16_g27903_MAGBIO' => 'mbi', 'MBI17_g30593_MAGBIO' => 'mbi', 'MBI17_g38829_MAGBIO' => 'mbi', 'MBI19_g32700_MAGBIO' => 'mbi', 'MBI19_g33777_MAGBIO' => 'mbi', 'MCO02G023' => 'mco', 'MCO02G032' => 'mco', 'MCO06G074' => 'mco', 'MCO07G158' => 'mco', 'MCO16G440' => 'mco', 'MD08G1203800' => 'mdo', 'MD08G1203900' => 'mdo', 'MD13G1096800' => 'mdo', 'MD16G1097800' => 'mdo', 'Medtr5g066740' => 'mtr', 'Medtr7g005540' => 'mtr', 'Medtr8g069760' => 'mtr', 'MELO3C008106.2' => 'cme', 'MELO3C011972.2' => 'cme', 'Migut.B00439' => 'egut', 'Migut.L01476' => 'egut', 'Migut.N01147' => 'egut', 'MSTRG.16686' => 'ama', 'MSTRG.27758' => 'ama', 'MSTRG.5323' => 'ama', 'MSTRG.577' => 'ama', 'MSTRG.7915' => 'ama', 'Nitab4.5_0000354g0080' => 'nta', 'Nitab4.5_0000885g0060' => 'nta', 'Nitab4.5_0002255g0040' => 'nta', 'Nitab4.5_0007943g0010' => 'nta', 'Nn1g05642' => 'nnu', 'Nn4g22680' => 'nnu', 'Nn5g29817' => 'nnu', 'Oeu038169.3' => 'oeu', 'Oeu038612.1' => 'oeu', 'Oeu040884.1' => 'oeu', 'Os01g0970500' => 'osa', 'Os05g0107700' => 'osa', 'Os06g0474866' => 'osa', 'Os06g0498400' => 'osa', 'Peaxi162Scf00160g00913' => 'pax', 'Peaxi162Scf00515g00133' => 'pax', 'PGR042G3224' => 'pgr', 'PGR119G2090' => 'pgr', 'PGSC0003DMG400002052' => 'stu', 'PGSC0003DMG400007677' => 'stu', 'Phvul.003G062900' => 'pvu', 'Phvul.008G183300' => 'pvu', 'Potri.005G151700' => 'ptr', 'Potri.008G188150' => 'ptr', 'Potri.010G044100' => 'ptr', 'Pp3c15_13540' => 'ppa', 'Pp3c3_11200' => 'ppa', 'Pp3c8_6520' => 'ppa', 'Pp3c8_6536' => 'ppa', 'Pp3c9_10830' => 'ppa', 'PRCOL_00000768' => 'pco', 'PRCOL_00001724' => 'pco', 'PRCOL_00006458' => 'pco', 'Prupe.1G248900' => 'ppe', 'Prupe.1G536100' => 'ppe', 'Prupe.1G536300' => 'ppe', 'Psat0s2399g0160' => 'psa', 'Psat2g064960' => 'psa', 'Psat4g114160' => 'psa', 'Psat4g114200' => 'psa', 'Psat4g114240' => 'psa', 'PSO013G0324' => 'pso', 'PSO063G5092' => 'pso', 'PSO675G6980' => 'pso', 'PSO700G0345' => 'pso', 'PSO761G0276' => 'pso', 'PSO832G0819' => 'pso', 'PSO832G3977' => 'pso', 'QL03p058693' => 'qlo', 'QL09p018643' => 'qlo', 'QL09p018667' => 'qlo', 'RcHm_v2.0_Chr2g0129611' => 'rch', 'RcHm_v2.0_Chr4g0433251' => 'rch', 'RcHm_v2.0_Chr5g0012851' => 'rch', 'RcHm_v2.0_Chr6g0270131' => 'rch', 'RcHm_v2.0_Chr7g0233431' => 'rch', 'RcHm_v2.0_Chr7g0233761' => 'rch', 'RcHm_v2.0_Chr7g0233791' => 'rch', 'RcHm_v2.0_Chr7g0233821' => 'rch', 'RcHm_v2.0_Chr7g0233921' => 'rch', 'RcHm_v2.0_Chr7g0233931' => 'rch', 'RcHm_v2.0_Chr7g0234231' => 'rch', 'RcHm_v2.0_Chr7g0234461' => 'rch', 'RcHm_v2.0_Chr7g0234611' => 'rch', 'RcHm_v2.0_Chr7g0234621' => 'rch', 'Rhsim02G0071900' => 'rsi', 'Rhsim07G0213400' => 'rsi', 'Rhsim07G0213700' => 'rsi', 'Rhsim12G0042000' => 'rsi', 'Rhsim12G0113000' => 'rsi', 'Sabra02G0086900' => 'sbr', 'Sabra05G0119200' => 'sbr', 'Sabra08G0142500' => 'sbr', 'Sabra10G0023900' => 'sbr', 'SalBow2G1604' => 'sbo', 'SalBow3G1925' => 'sbo', 'SalBow6G3832' => 'sbo', 'SalBow6G5818' => 'sbo', 'Sc04g0009380' => 'sci', 'Sed0006405' => 'sed', 'Sed0015347' => 'sed', 'Sed0016266' => 'sed', 'Sed0024840' => 'sed', 'SEGI_00062' => 'sgi', 'SEGI_00676' => 'sgi', 'SEGI_12281' => 'sgi', 'SEGI_25233' => 'sgi', 'SEGI_32317' => 'sgi', 'SEGI_32533' => 'sgi', 'SEGI_33023' => 'sgi', 'SEGI_38232' => 'sgi', 'SEGI_38712' => 'sgi', 'SGA_v2.0_scaffold219G42523' => 'sas', 'SGA_v2.0_scaffold228G43260' => 'sas', 'SGA_v2.0_scaffold337G49194' => 'sas', 'SHI29728' => 'shi', 'SMO069G0004' => 'smo', 'SMO133G0036' => 'smo', 'SMO169G0007' => 'smo', 'SMO347G0598' => 'smo', 'Solyc05g005020.4' => 'sly', 'Solyc12g088030.2' => 'sly', 'Sopen05g001030' => 'spe', 'Sopen12g030060' => 'spe', 'Sp1g09460' => 'spa', 'Sp7g22400' => 'spa', 'Sp7g22430' => 'spa', 'TAR374G1700' => 'tar', 'TAR381G0322' => 'tar', 'TAR622G0036' => 'tar', 'TAR625G0060' => 'tar', 'TAR628G1058' => 'tar', 'THA.LOC104799853' => 'tha', 'THA.LOC104799855' => 'tha', 'THA.LOC104815469' => 'tha', 'THA.LOC104823655' => 'tha', 'Thecc.02G256300' => 'tca', 'Thecc.08G073900' => 'tca', 'Thecc.08G074000' => 'tca', 'Thhalv10006565m.g' => 'esa', 'Thhalv10024230m.g' => 'esa', 'Thhalv10026637m.g' => 'esa', 'TPR.G15622' => 'tpr', 'TPR.G23137' => 'tpr', 'TPR.G38776' => 'tpr', 'TWI09G0135' => 'twi', 'TWI18G0188' => 'twi', 'TWI56G0439' => 'twi', 'TWI73G1055' => 'twi', 'TWI75G1447' => 'twi', 'unitig_22.g6842' => 'ugi', 'unitig_26.g10358' => 'ugi', 'unitig_8.g3420' => 'ugi', 'vmacro01143' => 'vma', 'vmacro04624' => 'vma', 'vmacro04625' => 'vma', 'vmacro04633' => 'vma', 'vmacro04634' => 'vma', 'vmacro04635' => 'vma', 'vmacro16213' => 'vma', 'VMungo0251G0184' => 'vmu', 'VMungo0647G1399' => 'vmu', 'Zm00001eb072320' => 'zma', 'Zm00001eb139900' => 'zma', 'Zm00001eb278140' => 'zma', 'Zm00001eb356100' => 'zma', 'Zm00001eb398390' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001366', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001366' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001366', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '457', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001366' ) ), 'genes' => array( 'A01p15810' => 'bna', 'A02p12370' => 'bna', 'A03p55290' => 'bna', 'A06p20360' => 'bna', 'A08p03570' => 'bna', 'A08p21460' => 'bna', 'A08p33790' => 'bna', 'A09p64660' => 'bna', 'Aa31LG1G4070' => 'aar', 'Aa31LG4G9540' => 'aar', 'Aa31LG4G9550' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3950' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5579' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2092' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2093' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.756' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3722' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1269' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1797' => 'aag', 'Actinidia03178' => 'ach', 'Actinidia14321' => 'ach', 'Actinidia15071' => 'ach', 'Actinidia19254' => 'ach', 'Actinidia19617' => 'ach', 'Actinidia29656' => 'ach', 'Actinidia37408' => 'ach', 'Actinidia37409' => 'ach', 'Actinidia37410' => 'ach', 'Actinidia37411' => 'ach', 'Ah.01g003970' => 'amhyb', 'Ah.02g130140' => 'amhyb', 'Ah.03g133220' => 'amhyb', 'AL1G21690' => 'aly', 'AL7G28770' => 'aly', 'AL7G28780' => 'aly', 'Aqoxy2G03242' => 'aox', 'Aqoxy3G02840' => 'aox', 'Aqoxy6G00666' => 'aox', 'Aqoxy6G00668_Aqoxy6G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52KDTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8785AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90XW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRNC3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM29ET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU70H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2L19B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8Y0HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T41BVH' => 'arhy', 'AT1G10760' => 'ath', 'AT4G24440' => 'ath', 'AT4G24450' => 'ath', 'ATR0691G175' => 'atr', 'ATR0767G073' => 'atr', 'ATR1152G017' => 'atr', 'Atru.chr11.2087' => 'acertr', 'Atru.chr11.619' => 'acertr', 'Atru.chr13.973' => 'acertr', 'Atru.chr13.974' => 'acertr', 'AUR62005429' => 'cqu', 'AUR62014090' => 'cqu', 'AUR62014838' => 'cqu', 'AUR62017035' => 'cqu', 'BcaB08g37373' => 'bca', 'BcaC04g23602' => 'bca', 'BcaC06g32884' => 'bca', 'BcaC06g34403' => 'bca', 'BcaC07g38588' => 'bca', 'BcaC07g38627' => 'bca', 'BcaC08g43388' => 'bca', 'BcaC09g50867' => 'bca', 'BcaC09g50868' => 'bca', 'BcaNung05637' => 'bca', 'BcaNung06799' => 'bca', 'BolC1t01904H' => 'bol', 'BolC3t20986H' => 'bol', 'BolC3t20989H' => 'bol', 'BolC6t35845H' => 'bol', 'BolC7t43445H' => 'bol', 'BolC7t45851H' => 'bol', 'BolC8t48576H' => 'bol', 'BolC8t49029H' => 'bol', 'BolC8t52392H' => 'bol', 'BolC9t58777H' => 'bol', 'BraA01t01516Z' => 'bra', 'BraA03t14588Z' => 'bra', 'BraA06t23226Z' => 'bra', 'BraA07t27914Z' => 'bra', 'BraA07t30432Z' => 'bra', 'BraA08t34095Z' => 'bra', 'BraA08t35295Z' => 'bra', 'BraA09t41826Z' => 'bra', 'C01p19760' => 'bna', 'C01p31290' => 'bna', 'C01p47940' => 'bna', 'C04p15580' => 'bna', 'C06p07570' => 'bna', 'C07p29060' => 'bna', 'C07p53590' => 'bna', 'C08p13950' => 'bna', 'C08p48530' => 'bna', 'C09p59380' => 'bna', 'CAN.G1104.8' => 'can', 'CAN.G447.9' => 'can', 'CANSAT01G0055' => 'cansat', 'CANSAT25G2801' => 'cansat', 'CANSAT64G0829' => 'cansat', 'CARHR010980' => 'chi', 'CARHR231830' => 'chi', 'CARHR231840' => 'chi', 'Carub.0001s1031' => 'cru', 'Carub.0007s1662' => 'cru', 'Carub.0007s1663' => 'cru', 'Ca_08744_v3' => 'car', 'Ca_22500_v3' => 'car', 'CBR_g12420' => 'cbr', 'CBR_g39013' => 'cbr', 'Cc10_g08370' => 'ccan', 'Cc11_g15490' => 'ccan', 'CDE04G1797' => 'cde', 'CDE04G2323' => 'cde', 'CDE04G3375' => 'cde', 'CDE04G3560' => 'cde', 'CDE06G0295' => 'cde', 'Cfa009191' => 'cfa', 'Ciclev10002917m.g' => 'ccl', 'Ciclev10017434m.g' => 'ccl', 'Ciclev10030499m.g' => 'ccl', 'CiPaw.05G184800' => 'cil', 'CiPaw.07G162800' => 'cil', 'CiPaw.07G162900' => 'cil', 'CiPaw.07G163000' => 'cil', 'CiPaw.08G057200' => 'cil', 'ClCG05G025580' => 'cla', 'ClCG11G014700' => 'cla', 'COL.COLO4_24234' => 'col', 'COL.COLO4_35285' => 'col', 'COL.COLO4_35286' => 'col', 'Cpa.g.sc21.43' => 'cpa', 'Cpa.g.sc69.90' => 'cpa', 'Cre07.g319300' => 'cre', 'Cre07.g319340' => 'cre', 'Cre07.g332300' => 'cre', 'Cre07.g333252' => 'cre', 'Cre08.g363874' => 'cre', 'Cre10.g424150' => 'cre', 'CsaV3_2G033350' => 'csa', 'CsaV3_2G033370' => 'csa', 'CsaV3_5G031320' => 'csa', 'CSS0001204' => 'camsi', 'CSS0005618' => 'camsi', 'CSS0021224' => 'camsi', 'CSS0026904' => 'camsi', 'CSS0027855' => 'camsi', 'CSS0031876' => 'camsi', 'CSS0046721' => 'camsi', 'CSS0046983' => 'camsi', 'CSS0048442' => 'camsi', 'DCAR_006444' => 'dca', 'DCAR_007066' => 'dca', 'DCAR_007067' => 'dca', 'DCAR_029738' => 'dca', 'DCAR_031129' => 'dca', 'Dinv15253' => 'din', 'Dinv24813' => 'din', 'Dinv42590' => 'din', 'Dinv42591' => 'din', 'Duzib041G0019' => 'dzi', 'Duzib041G0627' => 'dzi', 'Duzib116G0949' => 'dzi', 'Duzib268G0758' => 'dzi', 'ECA233G2601' => 'eca', 'ECA234G4650' => 'eca', 'ECA240G3991' => 'eca', 'ECA246G1742' => 'eca', 'EL10Ac6g13726' => 'bvu', 'EL10Ac8g20405' => 'bvu', 'EL10Ac9g20840' => 'bvu', 'Eucgr.F00436' => 'egr', 'Eucgr.H02531' => 'egr', 'FAN04G2369' => 'fan', 'FAN04G2482' => 'fan', 'FAN07G2766' => 'fan', 'FAN12G2701' => 'fan', 'FAN12G3618' => 'fan', 'FAN17G2901' => 'fan', 'FAN18G2982' => 'fan', 'FAN22G0388' => 'fan', 'FvH4_4g25800' => 'fve', 'FvH4_5g34180' => 'fve', 'FvH4_5g34191' => 'fve', 'FvH4_5g34192' => 'fve', 'FvH4_5g34193' => 'fve', 'Glyma.02G216100' => 'gma', 'Glyma.04G096500' => 'gma', 'Glyma.06G098200' => 'gma', 'Glyma.08G283700' => 'gma', 'Glyma.14G183100' => 'gma', 'Glyma.18G142500' => 'gma', 'Gohir.A01G159900' => 'ghi', 'Gohir.A01G159950' => 'ghi', 'Gohir.A05G216400' => 'ghi', 'Gohir.A05G216500' => 'ghi', 'Gohir.A05G264200' => 'ghi', 'Gohir.A12G144350' => 'ghi', 'Gohir.A12G144400' => 'ghi', 'Gohir.D01G150200' => 'ghi', 'Gohir.D05G220900' => 'ghi', 'Gohir.D05G221000' => 'ghi', 'Gohir.D05G266700' => 'ghi', 'Gohir.D12G148950' => 'ghi', 'Gohir.D12G149000' => 'ghi', 'Gorai.002G186200' => 'gra', 'Gorai.008G160400' => 'gra', 'Gorai.009G228000' => 'gra', 'Gorai.009G228100' => 'gra', 'Gorai.009G278800' => 'gra', 'GSVIVG01009213001' => 'vvi', 'GSVIVG01013806001' => 'vvi', 'HanXRQChr03g0063191' => 'han', 'HanXRQChr03g0093361' => 'han', 'HanXRQChr05g0143271' => 'han', 'HanXRQChr09g0264681' => 'han', 'HanXRQChr10g0277741' => 'han', 'HanXRQChr10g0277751' => 'han', 'HanXRQChr11g0353851' => 'han', 'HanXRQChr12g0371851' => 'han', 'HanXRQChr12g0384161' => 'han', 'HanXRQChr17g0547611' => 'han', 'HanXRQChr17g0547621' => 'han', 'Haze_12225' => 'cav', 'Haze_22489' => 'cav', 'Haze_27711' => 'cav', 'Hma1.2p1_0044F.1_g026380' => 'hma', 'Hma1.2p1_0125F.1_g058680' => 'hma', 'Hma1.2p1_0125F.1_g058690' => 'hma', 'Hma1.2p1_0223F.1_g094185' => 'hma', 'Hma1.2p1_0344F.1_g131080' => 'hma', 'Hma1.2p1_1861F.1_g305660' => 'hma', 'HPP92_003084' => 'vpl', 'HPP92_010288' => 'vpl', 'Hund01464' => 'sun', 'Hund06013' => 'sun', 'Hund07854' => 'sun', 'Hund18026' => 'sun', 'Hund25378' => 'sun', 'Hund25379' => 'sun', 'Lalb_Chr08g0242611' => 'lal', 'Lalb_Chr09g0334851' => 'lal', 'Lalb_Chr09g0334861' => 'lal', 'Lalb_Chr09g0334871' => 'lal', 'Lalb_Chr09g0334881' => 'lal', 'Lalb_Chr11g0064851' => 'lal', 'Lalb_Chr16g0392241' => 'lal', 'Lalb_Chr23g0269931' => 'lal', 'Lalb_Chr23g0269941' => 'lal', 'Lj4A85G30' => 'lonja', 'Lj4A85G31' => 'lonja', 'Lj4A85G32' => 'lonja', 'Lj4g0012667' => 'lja', 'Lj6A809T49' => 'lonja', 'Lj6C809G13' => 'lonja', 'LjContig00408g0006754' => 'lja', 'Lsat_1_v5_gn_4_160220' => 'lsa', 'Lsat_1_v5_gn_4_4920' => 'lsa', 'Lsat_1_v5_gn_4_60280' => 'lsa', 'Lsat_1_v5_gn_6_107360' => 'lsa', 'Lsat_1_v5_gn_7_43741' => 'lsa', 'Lsat_1_v5_gn_8_153980' => 'lsa', 'Manes.05G189000' => 'mes', 'Manes.13G026800' => 'mes', 'Manes.18G057000' => 'mes', 'Mapoly0012s0108' => 'mpo', 'Mapoly0038s0029' => 'mpo', 'Mapoly0046s0022' => 'mpo', 'Mapoly0046s0023' => 'mpo', 'Mapoly0067s0078' => 'mpo', 'MBI02_g34989_MAGBIO' => 'mbi', 'MBI05_g39009_MAGBIO' => 'mbi', 'MBI15_g14939_MAGBIO' => 'mbi', 'MBI16_g14597_MAGBIO' => 'mbi', 'MBI16_g27903_MAGBIO' => 'mbi', 'MBI17_g30593_MAGBIO' => 'mbi', 'MBI17_g38829_MAGBIO' => 'mbi', 'MBI19_g32700_MAGBIO' => 'mbi', 'MBI19_g33777_MAGBIO' => 'mbi', 'MCO02G023' => 'mco', 'MCO02G032' => 'mco', 'MCO06G074' => 'mco', 'MCO07G158' => 'mco', 'MCO16G440' => 'mco', 'MD08G1203800' => 'mdo', 'MD08G1203900' => 'mdo', 'MD13G1096800' => 'mdo', 'MD16G1097800' => 'mdo', 'Medtr5g066740' => 'mtr', 'Medtr7g005540' => 'mtr', 'Medtr8g069760' => 'mtr', 'MELO3C008106.2' => 'cme', 'MELO3C011972.2' => 'cme', 'Migut.B00439' => 'egut', 'Migut.L01476' => 'egut', 'Migut.N01147' => 'egut', 'MSTRG.16686' => 'ama', 'MSTRG.27758' => 'ama', 'MSTRG.5323' => 'ama', 'MSTRG.577' => 'ama', 'MSTRG.7915' => 'ama', 'Nitab4.5_0000354g0080' => 'nta', 'Nitab4.5_0000885g0060' => 'nta', 'Nitab4.5_0002255g0040' => 'nta', 'Nitab4.5_0007943g0010' => 'nta', 'Nn1g05642' => 'nnu', 'Nn4g22680' => 'nnu', 'Nn5g29817' => 'nnu', 'Oeu038169.3' => 'oeu', 'Oeu038612.1' => 'oeu', 'Oeu040884.1' => 'oeu', 'Os01g0970500' => 'osa', 'Os05g0107700' => 'osa', 'Os06g0474866' => 'osa', 'Os06g0498400' => 'osa', 'Peaxi162Scf00160g00913' => 'pax', 'Peaxi162Scf00515g00133' => 'pax', 'PGR042G3224' => 'pgr', 'PGR119G2090' => 'pgr', 'PGSC0003DMG400002052' => 'stu', 'PGSC0003DMG400007677' => 'stu', 'Phvul.003G062900' => 'pvu', 'Phvul.008G183300' => 'pvu', 'Potri.005G151700' => 'ptr', 'Potri.008G188150' => 'ptr', 'Potri.010G044100' => 'ptr', 'Pp3c15_13540' => 'ppa', 'Pp3c3_11200' => 'ppa', 'Pp3c8_6520' => 'ppa', 'Pp3c8_6536' => 'ppa', 'Pp3c9_10830' => 'ppa', 'PRCOL_00000768' => 'pco', 'PRCOL_00001724' => 'pco', 'PRCOL_00006458' => 'pco', 'Prupe.1G248900' => 'ppe', 'Prupe.1G536100' => 'ppe', 'Prupe.1G536300' => 'ppe', 'Psat0s2399g0160' => 'psa', 'Psat2g064960' => 'psa', 'Psat4g114160' => 'psa', 'Psat4g114200' => 'psa', 'Psat4g114240' => 'psa', 'PSO013G0324' => 'pso', 'PSO063G5092' => 'pso', 'PSO675G6980' => 'pso', 'PSO700G0345' => 'pso', 'PSO761G0276' => 'pso', 'PSO832G0819' => 'pso', 'PSO832G3977' => 'pso', 'QL03p058693' => 'qlo', 'QL09p018643' => 'qlo', 'QL09p018667' => 'qlo', 'RcHm_v2.0_Chr2g0129611' => 'rch', 'RcHm_v2.0_Chr4g0433251' => 'rch', 'RcHm_v2.0_Chr5g0012851' => 'rch', 'RcHm_v2.0_Chr6g0270131' => 'rch', 'RcHm_v2.0_Chr7g0233431' => 'rch', 'RcHm_v2.0_Chr7g0233761' => 'rch', 'RcHm_v2.0_Chr7g0233791' => 'rch', 'RcHm_v2.0_Chr7g0233821' => 'rch', 'RcHm_v2.0_Chr7g0233921' => 'rch', 'RcHm_v2.0_Chr7g0233931' => 'rch', 'RcHm_v2.0_Chr7g0234231' => 'rch', 'RcHm_v2.0_Chr7g0234461' => 'rch', 'RcHm_v2.0_Chr7g0234611' => 'rch', 'RcHm_v2.0_Chr7g0234621' => 'rch', 'Rhsim02G0071900' => 'rsi', 'Rhsim07G0213400' => 'rsi', 'Rhsim07G0213700' => 'rsi', 'Rhsim12G0042000' => 'rsi', 'Rhsim12G0113000' => 'rsi', 'Sabra02G0086900' => 'sbr', 'Sabra05G0119200' => 'sbr', 'Sabra08G0142500' => 'sbr', 'Sabra10G0023900' => 'sbr', 'SalBow2G1604' => 'sbo', 'SalBow3G1925' => 'sbo', 'SalBow6G3832' => 'sbo', 'SalBow6G5818' => 'sbo', 'Sc04g0009380' => 'sci', 'Sed0006405' => 'sed', 'Sed0015347' => 'sed', 'Sed0016266' => 'sed', 'Sed0024840' => 'sed', 'SEGI_00062' => 'sgi', 'SEGI_00676' => 'sgi', 'SEGI_12281' => 'sgi', 'SEGI_25233' => 'sgi', 'SEGI_32317' => 'sgi', 'SEGI_32533' => 'sgi', 'SEGI_33023' => 'sgi', 'SEGI_38232' => 'sgi', 'SEGI_38712' => 'sgi', 'SGA_v2.0_scaffold219G42523' => 'sas', 'SGA_v2.0_scaffold228G43260' => 'sas', 'SGA_v2.0_scaffold337G49194' => 'sas', 'SHI29728' => 'shi', 'SMO069G0004' => 'smo', 'SMO133G0036' => 'smo', 'SMO169G0007' => 'smo', 'SMO347G0598' => 'smo', 'Solyc05g005020.4' => 'sly', 'Solyc12g088030.2' => 'sly', 'Sopen05g001030' => 'spe', 'Sopen12g030060' => 'spe', 'Sp1g09460' => 'spa', 'Sp7g22400' => 'spa', 'Sp7g22430' => 'spa', 'TAR374G1700' => 'tar', 'TAR381G0322' => 'tar', 'TAR622G0036' => 'tar', 'TAR625G0060' => 'tar', 'TAR628G1058' => 'tar', 'THA.LOC104799853' => 'tha', 'THA.LOC104799855' => 'tha', 'THA.LOC104815469' => 'tha', 'THA.LOC104823655' => 'tha', 'Thecc.02G256300' => 'tca', 'Thecc.08G073900' => 'tca', 'Thecc.08G074000' => 'tca', 'Thhalv10006565m.g' => 'esa', 'Thhalv10024230m.g' => 'esa', 'Thhalv10026637m.g' => 'esa', 'TPR.G15622' => 'tpr', 'TPR.G23137' => 'tpr', 'TPR.G38776' => 'tpr', 'TWI09G0135' => 'twi', 'TWI18G0188' => 'twi', 'TWI56G0439' => 'twi', 'TWI73G1055' => 'twi', 'TWI75G1447' => 'twi', 'unitig_22.g6842' => 'ugi', 'unitig_26.g10358' => 'ugi', 'unitig_8.g3420' => 'ugi', 'vmacro01143' => 'vma', 'vmacro04624' => 'vma', 'vmacro04625' => 'vma', 'vmacro04633' => 'vma', 'vmacro04634' => 'vma', 'vmacro04635' => 'vma', 'vmacro16213' => 'vma', 'VMungo0251G0184' => 'vmu', 'VMungo0647G1399' => 'vmu', 'Zm00001eb072320' => 'zma', 'Zm00001eb139900' => 'zma', 'Zm00001eb278140' => 'zma', 'Zm00001eb356100' => 'zma', 'Zm00001eb398390' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001366' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001366' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001366' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001366' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001366', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '457', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p15810' => 'bna', 'A02p12370' => 'bna', 'A03p55290' => 'bna', 'A06p20360' => 'bna', 'A08p03570' => 'bna', 'A08p21460' => 'bna', 'A08p33790' => 'bna', 'A09p64660' => 'bna', 'Aa31LG1G4070' => 'aar', 'Aa31LG4G9540' => 'aar', 'Aa31LG4G9550' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3950' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5579' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2092' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2093' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.756' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3722' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1269' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1797' => 'aag', 'Actinidia03178' => 'ach', 'Actinidia14321' => 'ach', 'Actinidia15071' => 'ach', 'Actinidia19254' => 'ach', 'Actinidia19617' => 'ach', 'Actinidia29656' => 'ach', 'Actinidia37408' => 'ach', 'Actinidia37409' => 'ach', 'Actinidia37410' => 'ach', 'Actinidia37411' => 'ach', 'Ah.01g003970' => 'amhyb', 'Ah.02g130140' => 'amhyb', 'Ah.03g133220' => 'amhyb', 'AL1G21690' => 'aly', 'AL7G28770' => 'aly', 'AL7G28780' => 'aly', 'Aqoxy2G03242' => 'aox', 'Aqoxy3G02840' => 'aox', 'Aqoxy6G00666' => 'aox', 'Aqoxy6G00668_Aqoxy6G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52KDTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8785AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90XW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRNC3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM29ET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU70H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2L19B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8Y0HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T41BVH' => 'arhy', 'AT1G10760' => 'ath', 'AT4G24440' => 'ath', 'AT4G24450' => 'ath', 'ATR0691G175' => 'atr', 'ATR0767G073' => 'atr', 'ATR1152G017' => 'atr', 'Atru.chr11.2087' => 'acertr', 'Atru.chr11.619' => 'acertr', 'Atru.chr13.973' => 'acertr', 'Atru.chr13.974' => 'acertr', 'AUR62005429' => 'cqu', 'AUR62014090' => 'cqu', 'AUR62014838' => 'cqu', 'AUR62017035' => 'cqu', 'BcaB08g37373' => 'bca', 'BcaC04g23602' => 'bca', 'BcaC06g32884' => 'bca', 'BcaC06g34403' => 'bca', 'BcaC07g38588' => 'bca', 'BcaC07g38627' => 'bca', 'BcaC08g43388' => 'bca', 'BcaC09g50867' => 'bca', 'BcaC09g50868' => 'bca', 'BcaNung05637' => 'bca', 'BcaNung06799' => 'bca', 'BolC1t01904H' => 'bol', 'BolC3t20986H' => 'bol', 'BolC3t20989H' => 'bol', 'BolC6t35845H' => 'bol', 'BolC7t43445H' => 'bol', 'BolC7t45851H' => 'bol', 'BolC8t48576H' => 'bol', 'BolC8t49029H' => 'bol', 'BolC8t52392H' => 'bol', 'BolC9t58777H' => 'bol', 'BraA01t01516Z' => 'bra', 'BraA03t14588Z' => 'bra', 'BraA06t23226Z' => 'bra', 'BraA07t27914Z' => 'bra', 'BraA07t30432Z' => 'bra', 'BraA08t34095Z' => 'bra', 'BraA08t35295Z' => 'bra', 'BraA09t41826Z' => 'bra', 'C01p19760' => 'bna', 'C01p31290' => 'bna', 'C01p47940' => 'bna', 'C04p15580' => 'bna', 'C06p07570' => 'bna', 'C07p29060' => 'bna', 'C07p53590' => 'bna', 'C08p13950' => 'bna', 'C08p48530' => 'bna', 'C09p59380' => 'bna', 'CAN.G1104.8' => 'can', 'CAN.G447.9' => 'can', 'CANSAT01G0055' => 'cansat', 'CANSAT25G2801' => 'cansat', 'CANSAT64G0829' => 'cansat', 'CARHR010980' => 'chi', 'CARHR231830' => 'chi', 'CARHR231840' => 'chi', 'Carub.0001s1031' => 'cru', 'Carub.0007s1662' => 'cru', 'Carub.0007s1663' => 'cru', 'Ca_08744_v3' => 'car', 'Ca_22500_v3' => 'car', 'CBR_g12420' => 'cbr', 'CBR_g39013' => 'cbr', 'Cc10_g08370' => 'ccan', 'Cc11_g15490' => 'ccan', 'CDE04G1797' => 'cde', 'CDE04G2323' => 'cde', 'CDE04G3375' => 'cde', 'CDE04G3560' => 'cde', 'CDE06G0295' => 'cde', 'Cfa009191' => 'cfa', 'Ciclev10002917m.g' => 'ccl', 'Ciclev10017434m.g' => 'ccl', 'Ciclev10030499m.g' => 'ccl', 'CiPaw.05G184800' => 'cil', 'CiPaw.07G162800' => 'cil', 'CiPaw.07G162900' => 'cil', 'CiPaw.07G163000' => 'cil', 'CiPaw.08G057200' => 'cil', 'ClCG05G025580' => 'cla', 'ClCG11G014700' => 'cla', 'COL.COLO4_24234' => 'col', 'COL.COLO4_35285' => 'col', 'COL.COLO4_35286' => 'col', 'Cpa.g.sc21.43' => 'cpa', 'Cpa.g.sc69.90' => 'cpa', 'Cre07.g319300' => 'cre', 'Cre07.g319340' => 'cre', 'Cre07.g332300' => 'cre', 'Cre07.g333252' => 'cre', 'Cre08.g363874' => 'cre', 'Cre10.g424150' => 'cre', 'CsaV3_2G033350' => 'csa', 'CsaV3_2G033370' => 'csa', 'CsaV3_5G031320' => 'csa', 'CSS0001204' => 'camsi', 'CSS0005618' => 'camsi', 'CSS0021224' => 'camsi', 'CSS0026904' => 'camsi', 'CSS0027855' => 'camsi', 'CSS0031876' => 'camsi', 'CSS0046721' => 'camsi', 'CSS0046983' => 'camsi', 'CSS0048442' => 'camsi', 'DCAR_006444' => 'dca', 'DCAR_007066' => 'dca', 'DCAR_007067' => 'dca', 'DCAR_029738' => 'dca', 'DCAR_031129' => 'dca', 'Dinv15253' => 'din', 'Dinv24813' => 'din', 'Dinv42590' => 'din', 'Dinv42591' => 'din', 'Duzib041G0019' => 'dzi', 'Duzib041G0627' => 'dzi', 'Duzib116G0949' => 'dzi', 'Duzib268G0758' => 'dzi', 'ECA233G2601' => 'eca', 'ECA234G4650' => 'eca', 'ECA240G3991' => 'eca', 'ECA246G1742' => 'eca', 'EL10Ac6g13726' => 'bvu', 'EL10Ac8g20405' => 'bvu', 'EL10Ac9g20840' => 'bvu', 'Eucgr.F00436' => 'egr', 'Eucgr.H02531' => 'egr', 'FAN04G2369' => 'fan', 'FAN04G2482' => 'fan', 'FAN07G2766' => 'fan', 'FAN12G2701' => 'fan', 'FAN12G3618' => 'fan', 'FAN17G2901' => 'fan', 'FAN18G2982' => 'fan', 'FAN22G0388' => 'fan', 'FvH4_4g25800' => 'fve', 'FvH4_5g34180' => 'fve', 'FvH4_5g34191' => 'fve', 'FvH4_5g34192' => 'fve', 'FvH4_5g34193' => 'fve', 'Glyma.02G216100' => 'gma', 'Glyma.04G096500' => 'gma', 'Glyma.06G098200' => 'gma', 'Glyma.08G283700' => 'gma', 'Glyma.14G183100' => 'gma', 'Glyma.18G142500' => 'gma', 'Gohir.A01G159900' => 'ghi', 'Gohir.A01G159950' => 'ghi', 'Gohir.A05G216400' => 'ghi', 'Gohir.A05G216500' => 'ghi', 'Gohir.A05G264200' => 'ghi', 'Gohir.A12G144350' => 'ghi', 'Gohir.A12G144400' => 'ghi', 'Gohir.D01G150200' => 'ghi', 'Gohir.D05G220900' => 'ghi', 'Gohir.D05G221000' => 'ghi', 'Gohir.D05G266700' => 'ghi', 'Gohir.D12G148950' => 'ghi', 'Gohir.D12G149000' => 'ghi', 'Gorai.002G186200' => 'gra', 'Gorai.008G160400' => 'gra', 'Gorai.009G228000' => 'gra', 'Gorai.009G228100' => 'gra', 'Gorai.009G278800' => 'gra', 'GSVIVG01009213001' => 'vvi', 'GSVIVG01013806001' => 'vvi', 'HanXRQChr03g0063191' => 'han', 'HanXRQChr03g0093361' => 'han', 'HanXRQChr05g0143271' => 'han', 'HanXRQChr09g0264681' => 'han', 'HanXRQChr10g0277741' => 'han', 'HanXRQChr10g0277751' => 'han', 'HanXRQChr11g0353851' => 'han', 'HanXRQChr12g0371851' => 'han', 'HanXRQChr12g0384161' => 'han', 'HanXRQChr17g0547611' => 'han', 'HanXRQChr17g0547621' => 'han', 'Haze_12225' => 'cav', 'Haze_22489' => 'cav', 'Haze_27711' => 'cav', 'Hma1.2p1_0044F.1_g026380' => 'hma', 'Hma1.2p1_0125F.1_g058680' => 'hma', 'Hma1.2p1_0125F.1_g058690' => 'hma', 'Hma1.2p1_0223F.1_g094185' => 'hma', 'Hma1.2p1_0344F.1_g131080' => 'hma', 'Hma1.2p1_1861F.1_g305660' => 'hma', 'HPP92_003084' => 'vpl', 'HPP92_010288' => 'vpl', 'Hund01464' => 'sun', 'Hund06013' => 'sun', 'Hund07854' => 'sun', 'Hund18026' => 'sun', 'Hund25378' => 'sun', 'Hund25379' => 'sun', 'Lalb_Chr08g0242611' => 'lal', 'Lalb_Chr09g0334851' => 'lal', 'Lalb_Chr09g0334861' => 'lal', 'Lalb_Chr09g0334871' => 'lal', 'Lalb_Chr09g0334881' => 'lal', 'Lalb_Chr11g0064851' => 'lal', 'Lalb_Chr16g0392241' => 'lal', 'Lalb_Chr23g0269931' => 'lal', 'Lalb_Chr23g0269941' => 'lal', 'Lj4A85G30' => 'lonja', 'Lj4A85G31' => 'lonja', 'Lj4A85G32' => 'lonja', 'Lj4g0012667' => 'lja', 'Lj6A809T49' => 'lonja', 'Lj6C809G13' => 'lonja', 'LjContig00408g0006754' => 'lja', 'Lsat_1_v5_gn_4_160220' => 'lsa', 'Lsat_1_v5_gn_4_4920' => 'lsa', 'Lsat_1_v5_gn_4_60280' => 'lsa', 'Lsat_1_v5_gn_6_107360' => 'lsa', 'Lsat_1_v5_gn_7_43741' => 'lsa', 'Lsat_1_v5_gn_8_153980' => 'lsa', 'Manes.05G189000' => 'mes', 'Manes.13G026800' => 'mes', 'Manes.18G057000' => 'mes', 'Mapoly0012s0108' => 'mpo', 'Mapoly0038s0029' => 'mpo', 'Mapoly0046s0022' => 'mpo', 'Mapoly0046s0023' => 'mpo', 'Mapoly0067s0078' => 'mpo', 'MBI02_g34989_MAGBIO' => 'mbi', 'MBI05_g39009_MAGBIO' => 'mbi', 'MBI15_g14939_MAGBIO' => 'mbi', 'MBI16_g14597_MAGBIO' => 'mbi', 'MBI16_g27903_MAGBIO' => 'mbi', 'MBI17_g30593_MAGBIO' => 'mbi', 'MBI17_g38829_MAGBIO' => 'mbi', 'MBI19_g32700_MAGBIO' => 'mbi', 'MBI19_g33777_MAGBIO' => 'mbi', 'MCO02G023' => 'mco', 'MCO02G032' => 'mco', 'MCO06G074' => 'mco', 'MCO07G158' => 'mco', 'MCO16G440' => 'mco', 'MD08G1203800' => 'mdo', 'MD08G1203900' => 'mdo', 'MD13G1096800' => 'mdo', 'MD16G1097800' => 'mdo', 'Medtr5g066740' => 'mtr', 'Medtr7g005540' => 'mtr', 'Medtr8g069760' => 'mtr', 'MELO3C008106.2' => 'cme', 'MELO3C011972.2' => 'cme', 'Migut.B00439' => 'egut', 'Migut.L01476' => 'egut', 'Migut.N01147' => 'egut', 'MSTRG.16686' => 'ama', 'MSTRG.27758' => 'ama', 'MSTRG.5323' => 'ama', 'MSTRG.577' => 'ama', 'MSTRG.7915' => 'ama', 'Nitab4.5_0000354g0080' => 'nta', 'Nitab4.5_0000885g0060' => 'nta', 'Nitab4.5_0002255g0040' => 'nta', 'Nitab4.5_0007943g0010' => 'nta', 'Nn1g05642' => 'nnu', 'Nn4g22680' => 'nnu', 'Nn5g29817' => 'nnu', 'Oeu038169.3' => 'oeu', 'Oeu038612.1' => 'oeu', 'Oeu040884.1' => 'oeu', 'Os01g0970500' => 'osa', 'Os05g0107700' => 'osa', 'Os06g0474866' => 'osa', 'Os06g0498400' => 'osa', 'Peaxi162Scf00160g00913' => 'pax', 'Peaxi162Scf00515g00133' => 'pax', 'PGR042G3224' => 'pgr', 'PGR119G2090' => 'pgr', 'PGSC0003DMG400002052' => 'stu', 'PGSC0003DMG400007677' => 'stu', 'Phvul.003G062900' => 'pvu', 'Phvul.008G183300' => 'pvu', 'Potri.005G151700' => 'ptr', 'Potri.008G188150' => 'ptr', 'Potri.010G044100' => 'ptr', 'Pp3c15_13540' => 'ppa', 'Pp3c3_11200' => 'ppa', 'Pp3c8_6520' => 'ppa', 'Pp3c8_6536' => 'ppa', 'Pp3c9_10830' => 'ppa', 'PRCOL_00000768' => 'pco', 'PRCOL_00001724' => 'pco', 'PRCOL_00006458' => 'pco', 'Prupe.1G248900' => 'ppe', 'Prupe.1G536100' => 'ppe', 'Prupe.1G536300' => 'ppe', 'Psat0s2399g0160' => 'psa', 'Psat2g064960' => 'psa', 'Psat4g114160' => 'psa', 'Psat4g114200' => 'psa', 'Psat4g114240' => 'psa', 'PSO013G0324' => 'pso', 'PSO063G5092' => 'pso', 'PSO675G6980' => 'pso', 'PSO700G0345' => 'pso', 'PSO761G0276' => 'pso', 'PSO832G0819' => 'pso', 'PSO832G3977' => 'pso', 'QL03p058693' => 'qlo', 'QL09p018643' => 'qlo', 'QL09p018667' => 'qlo', 'RcHm_v2.0_Chr2g0129611' => 'rch', 'RcHm_v2.0_Chr4g0433251' => 'rch', 'RcHm_v2.0_Chr5g0012851' => 'rch', 'RcHm_v2.0_Chr6g0270131' => 'rch', 'RcHm_v2.0_Chr7g0233431' => 'rch', 'RcHm_v2.0_Chr7g0233761' => 'rch', 'RcHm_v2.0_Chr7g0233791' => 'rch', 'RcHm_v2.0_Chr7g0233821' => 'rch', 'RcHm_v2.0_Chr7g0233921' => 'rch', 'RcHm_v2.0_Chr7g0233931' => 'rch', 'RcHm_v2.0_Chr7g0234231' => 'rch', 'RcHm_v2.0_Chr7g0234461' => 'rch', 'RcHm_v2.0_Chr7g0234611' => 'rch', 'RcHm_v2.0_Chr7g0234621' => 'rch', 'Rhsim02G0071900' => 'rsi', 'Rhsim07G0213400' => 'rsi', 'Rhsim07G0213700' => 'rsi', 'Rhsim12G0042000' => 'rsi', 'Rhsim12G0113000' => 'rsi', 'Sabra02G0086900' => 'sbr', 'Sabra05G0119200' => 'sbr', 'Sabra08G0142500' => 'sbr', 'Sabra10G0023900' => 'sbr', 'SalBow2G1604' => 'sbo', 'SalBow3G1925' => 'sbo', 'SalBow6G3832' => 'sbo', 'SalBow6G5818' => 'sbo', 'Sc04g0009380' => 'sci', 'Sed0006405' => 'sed', 'Sed0015347' => 'sed', 'Sed0016266' => 'sed', 'Sed0024840' => 'sed', 'SEGI_00062' => 'sgi', 'SEGI_00676' => 'sgi', 'SEGI_12281' => 'sgi', 'SEGI_25233' => 'sgi', 'SEGI_32317' => 'sgi', 'SEGI_32533' => 'sgi', 'SEGI_33023' => 'sgi', 'SEGI_38232' => 'sgi', 'SEGI_38712' => 'sgi', 'SGA_v2.0_scaffold219G42523' => 'sas', 'SGA_v2.0_scaffold228G43260' => 'sas', 'SGA_v2.0_scaffold337G49194' => 'sas', 'SHI29728' => 'shi', 'SMO069G0004' => 'smo', 'SMO133G0036' => 'smo', 'SMO169G0007' => 'smo', 'SMO347G0598' => 'smo', 'Solyc05g005020.4' => 'sly', 'Solyc12g088030.2' => 'sly', 'Sopen05g001030' => 'spe', 'Sopen12g030060' => 'spe', 'Sp1g09460' => 'spa', 'Sp7g22400' => 'spa', 'Sp7g22430' => 'spa', 'TAR374G1700' => 'tar', 'TAR381G0322' => 'tar', 'TAR622G0036' => 'tar', 'TAR625G0060' => 'tar', 'TAR628G1058' => 'tar', 'THA.LOC104799853' => 'tha', 'THA.LOC104799855' => 'tha', 'THA.LOC104815469' => 'tha', 'THA.LOC104823655' => 'tha', 'Thecc.02G256300' => 'tca', 'Thecc.08G073900' => 'tca', 'Thecc.08G074000' => 'tca', 'Thhalv10006565m.g' => 'esa', 'Thhalv10024230m.g' => 'esa', 'Thhalv10026637m.g' => 'esa', 'TPR.G15622' => 'tpr', 'TPR.G23137' => 'tpr', 'TPR.G38776' => 'tpr', 'TWI09G0135' => 'twi', 'TWI18G0188' => 'twi', 'TWI56G0439' => 'twi', 'TWI73G1055' => 'twi', 'TWI75G1447' => 'twi', 'unitig_22.g6842' => 'ugi', 'unitig_26.g10358' => 'ugi', 'unitig_8.g3420' => 'ugi', 'vmacro01143' => 'vma', 'vmacro04624' => 'vma', 'vmacro04625' => 'vma', 'vmacro04633' => 'vma', 'vmacro04634' => 'vma', 'vmacro04635' => 'vma', 'vmacro16213' => 'vma', 'VMungo0251G0184' => 'vmu', 'VMungo0647G1399' => 'vmu', 'Zm00001eb072320' => 'zma', 'Zm00001eb139900' => 'zma', 'Zm00001eb278140' => 'zma', 'Zm00001eb356100' => 'zma', 'Zm00001eb398390' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001366', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001366' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001366', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '457', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001366' ) ), 'genes' => array( 'A01p15810' => 'bna', 'A02p12370' => 'bna', 'A03p55290' => 'bna', 'A06p20360' => 'bna', 'A08p03570' => 'bna', 'A08p21460' => 'bna', 'A08p33790' => 'bna', 'A09p64660' => 'bna', 'Aa31LG1G4070' => 'aar', 'Aa31LG4G9540' => 'aar', 'Aa31LG4G9550' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3950' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5579' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2092' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2093' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.756' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3722' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1269' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1797' => 'aag', 'Actinidia03178' => 'ach', 'Actinidia14321' => 'ach', 'Actinidia15071' => 'ach', 'Actinidia19254' => 'ach', 'Actinidia19617' => 'ach', 'Actinidia29656' => 'ach', 'Actinidia37408' => 'ach', 'Actinidia37409' => 'ach', 'Actinidia37410' => 'ach', 'Actinidia37411' => 'ach', 'Ah.01g003970' => 'amhyb', 'Ah.02g130140' => 'amhyb', 'Ah.03g133220' => 'amhyb', 'AL1G21690' => 'aly', 'AL7G28770' => 'aly', 'AL7G28780' => 'aly', 'Aqoxy2G03242' => 'aox', 'Aqoxy3G02840' => 'aox', 'Aqoxy6G00666' => 'aox', 'Aqoxy6G00668_Aqoxy6G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52KDTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8785AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90XW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRNC3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM29ET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU70H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2L19B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8Y0HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T41BVH' => 'arhy', 'AT1G10760' => 'ath', 'AT4G24440' => 'ath', 'AT4G24450' => 'ath', 'ATR0691G175' => 'atr', 'ATR0767G073' => 'atr', 'ATR1152G017' => 'atr', 'Atru.chr11.2087' => 'acertr', 'Atru.chr11.619' => 'acertr', 'Atru.chr13.973' => 'acertr', 'Atru.chr13.974' => 'acertr', 'AUR62005429' => 'cqu', 'AUR62014090' => 'cqu', 'AUR62014838' => 'cqu', 'AUR62017035' => 'cqu', 'BcaB08g37373' => 'bca', 'BcaC04g23602' => 'bca', 'BcaC06g32884' => 'bca', 'BcaC06g34403' => 'bca', 'BcaC07g38588' => 'bca', 'BcaC07g38627' => 'bca', 'BcaC08g43388' => 'bca', 'BcaC09g50867' => 'bca', 'BcaC09g50868' => 'bca', 'BcaNung05637' => 'bca', 'BcaNung06799' => 'bca', 'BolC1t01904H' => 'bol', 'BolC3t20986H' => 'bol', 'BolC3t20989H' => 'bol', 'BolC6t35845H' => 'bol', 'BolC7t43445H' => 'bol', 'BolC7t45851H' => 'bol', 'BolC8t48576H' => 'bol', 'BolC8t49029H' => 'bol', 'BolC8t52392H' => 'bol', 'BolC9t58777H' => 'bol', 'BraA01t01516Z' => 'bra', 'BraA03t14588Z' => 'bra', 'BraA06t23226Z' => 'bra', 'BraA07t27914Z' => 'bra', 'BraA07t30432Z' => 'bra', 'BraA08t34095Z' => 'bra', 'BraA08t35295Z' => 'bra', 'BraA09t41826Z' => 'bra', 'C01p19760' => 'bna', 'C01p31290' => 'bna', 'C01p47940' => 'bna', 'C04p15580' => 'bna', 'C06p07570' => 'bna', 'C07p29060' => 'bna', 'C07p53590' => 'bna', 'C08p13950' => 'bna', 'C08p48530' => 'bna', 'C09p59380' => 'bna', 'CAN.G1104.8' => 'can', 'CAN.G447.9' => 'can', 'CANSAT01G0055' => 'cansat', 'CANSAT25G2801' => 'cansat', 'CANSAT64G0829' => 'cansat', 'CARHR010980' => 'chi', 'CARHR231830' => 'chi', 'CARHR231840' => 'chi', 'Carub.0001s1031' => 'cru', 'Carub.0007s1662' => 'cru', 'Carub.0007s1663' => 'cru', 'Ca_08744_v3' => 'car', 'Ca_22500_v3' => 'car', 'CBR_g12420' => 'cbr', 'CBR_g39013' => 'cbr', 'Cc10_g08370' => 'ccan', 'Cc11_g15490' => 'ccan', 'CDE04G1797' => 'cde', 'CDE04G2323' => 'cde', 'CDE04G3375' => 'cde', 'CDE04G3560' => 'cde', 'CDE06G0295' => 'cde', 'Cfa009191' => 'cfa', 'Ciclev10002917m.g' => 'ccl', 'Ciclev10017434m.g' => 'ccl', 'Ciclev10030499m.g' => 'ccl', 'CiPaw.05G184800' => 'cil', 'CiPaw.07G162800' => 'cil', 'CiPaw.07G162900' => 'cil', 'CiPaw.07G163000' => 'cil', 'CiPaw.08G057200' => 'cil', 'ClCG05G025580' => 'cla', 'ClCG11G014700' => 'cla', 'COL.COLO4_24234' => 'col', 'COL.COLO4_35285' => 'col', 'COL.COLO4_35286' => 'col', 'Cpa.g.sc21.43' => 'cpa', 'Cpa.g.sc69.90' => 'cpa', 'Cre07.g319300' => 'cre', 'Cre07.g319340' => 'cre', 'Cre07.g332300' => 'cre', 'Cre07.g333252' => 'cre', 'Cre08.g363874' => 'cre', 'Cre10.g424150' => 'cre', 'CsaV3_2G033350' => 'csa', 'CsaV3_2G033370' => 'csa', 'CsaV3_5G031320' => 'csa', 'CSS0001204' => 'camsi', 'CSS0005618' => 'camsi', 'CSS0021224' => 'camsi', 'CSS0026904' => 'camsi', 'CSS0027855' => 'camsi', 'CSS0031876' => 'camsi', 'CSS0046721' => 'camsi', 'CSS0046983' => 'camsi', 'CSS0048442' => 'camsi', 'DCAR_006444' => 'dca', 'DCAR_007066' => 'dca', 'DCAR_007067' => 'dca', 'DCAR_029738' => 'dca', 'DCAR_031129' => 'dca', 'Dinv15253' => 'din', 'Dinv24813' => 'din', 'Dinv42590' => 'din', 'Dinv42591' => 'din', 'Duzib041G0019' => 'dzi', 'Duzib041G0627' => 'dzi', 'Duzib116G0949' => 'dzi', 'Duzib268G0758' => 'dzi', 'ECA233G2601' => 'eca', 'ECA234G4650' => 'eca', 'ECA240G3991' => 'eca', 'ECA246G1742' => 'eca', 'EL10Ac6g13726' => 'bvu', 'EL10Ac8g20405' => 'bvu', 'EL10Ac9g20840' => 'bvu', 'Eucgr.F00436' => 'egr', 'Eucgr.H02531' => 'egr', 'FAN04G2369' => 'fan', 'FAN04G2482' => 'fan', 'FAN07G2766' => 'fan', 'FAN12G2701' => 'fan', 'FAN12G3618' => 'fan', 'FAN17G2901' => 'fan', 'FAN18G2982' => 'fan', 'FAN22G0388' => 'fan', 'FvH4_4g25800' => 'fve', 'FvH4_5g34180' => 'fve', 'FvH4_5g34191' => 'fve', 'FvH4_5g34192' => 'fve', 'FvH4_5g34193' => 'fve', 'Glyma.02G216100' => 'gma', 'Glyma.04G096500' => 'gma', 'Glyma.06G098200' => 'gma', 'Glyma.08G283700' => 'gma', 'Glyma.14G183100' => 'gma', 'Glyma.18G142500' => 'gma', 'Gohir.A01G159900' => 'ghi', 'Gohir.A01G159950' => 'ghi', 'Gohir.A05G216400' => 'ghi', 'Gohir.A05G216500' => 'ghi', 'Gohir.A05G264200' => 'ghi', 'Gohir.A12G144350' => 'ghi', 'Gohir.A12G144400' => 'ghi', 'Gohir.D01G150200' => 'ghi', 'Gohir.D05G220900' => 'ghi', 'Gohir.D05G221000' => 'ghi', 'Gohir.D05G266700' => 'ghi', 'Gohir.D12G148950' => 'ghi', 'Gohir.D12G149000' => 'ghi', 'Gorai.002G186200' => 'gra', 'Gorai.008G160400' => 'gra', 'Gorai.009G228000' => 'gra', 'Gorai.009G228100' => 'gra', 'Gorai.009G278800' => 'gra', 'GSVIVG01009213001' => 'vvi', 'GSVIVG01013806001' => 'vvi', 'HanXRQChr03g0063191' => 'han', 'HanXRQChr03g0093361' => 'han', 'HanXRQChr05g0143271' => 'han', 'HanXRQChr09g0264681' => 'han', 'HanXRQChr10g0277741' => 'han', 'HanXRQChr10g0277751' => 'han', 'HanXRQChr11g0353851' => 'han', 'HanXRQChr12g0371851' => 'han', 'HanXRQChr12g0384161' => 'han', 'HanXRQChr17g0547611' => 'han', 'HanXRQChr17g0547621' => 'han', 'Haze_12225' => 'cav', 'Haze_22489' => 'cav', 'Haze_27711' => 'cav', 'Hma1.2p1_0044F.1_g026380' => 'hma', 'Hma1.2p1_0125F.1_g058680' => 'hma', 'Hma1.2p1_0125F.1_g058690' => 'hma', 'Hma1.2p1_0223F.1_g094185' => 'hma', 'Hma1.2p1_0344F.1_g131080' => 'hma', 'Hma1.2p1_1861F.1_g305660' => 'hma', 'HPP92_003084' => 'vpl', 'HPP92_010288' => 'vpl', 'Hund01464' => 'sun', 'Hund06013' => 'sun', 'Hund07854' => 'sun', 'Hund18026' => 'sun', 'Hund25378' => 'sun', 'Hund25379' => 'sun', 'Lalb_Chr08g0242611' => 'lal', 'Lalb_Chr09g0334851' => 'lal', 'Lalb_Chr09g0334861' => 'lal', 'Lalb_Chr09g0334871' => 'lal', 'Lalb_Chr09g0334881' => 'lal', 'Lalb_Chr11g0064851' => 'lal', 'Lalb_Chr16g0392241' => 'lal', 'Lalb_Chr23g0269931' => 'lal', 'Lalb_Chr23g0269941' => 'lal', 'Lj4A85G30' => 'lonja', 'Lj4A85G31' => 'lonja', 'Lj4A85G32' => 'lonja', 'Lj4g0012667' => 'lja', 'Lj6A809T49' => 'lonja', 'Lj6C809G13' => 'lonja', 'LjContig00408g0006754' => 'lja', 'Lsat_1_v5_gn_4_160220' => 'lsa', 'Lsat_1_v5_gn_4_4920' => 'lsa', 'Lsat_1_v5_gn_4_60280' => 'lsa', 'Lsat_1_v5_gn_6_107360' => 'lsa', 'Lsat_1_v5_gn_7_43741' => 'lsa', 'Lsat_1_v5_gn_8_153980' => 'lsa', 'Manes.05G189000' => 'mes', 'Manes.13G026800' => 'mes', 'Manes.18G057000' => 'mes', 'Mapoly0012s0108' => 'mpo', 'Mapoly0038s0029' => 'mpo', 'Mapoly0046s0022' => 'mpo', 'Mapoly0046s0023' => 'mpo', 'Mapoly0067s0078' => 'mpo', 'MBI02_g34989_MAGBIO' => 'mbi', 'MBI05_g39009_MAGBIO' => 'mbi', 'MBI15_g14939_MAGBIO' => 'mbi', 'MBI16_g14597_MAGBIO' => 'mbi', 'MBI16_g27903_MAGBIO' => 'mbi', 'MBI17_g30593_MAGBIO' => 'mbi', 'MBI17_g38829_MAGBIO' => 'mbi', 'MBI19_g32700_MAGBIO' => 'mbi', 'MBI19_g33777_MAGBIO' => 'mbi', 'MCO02G023' => 'mco', 'MCO02G032' => 'mco', 'MCO06G074' => 'mco', 'MCO07G158' => 'mco', 'MCO16G440' => 'mco', 'MD08G1203800' => 'mdo', 'MD08G1203900' => 'mdo', 'MD13G1096800' => 'mdo', 'MD16G1097800' => 'mdo', 'Medtr5g066740' => 'mtr', 'Medtr7g005540' => 'mtr', 'Medtr8g069760' => 'mtr', 'MELO3C008106.2' => 'cme', 'MELO3C011972.2' => 'cme', 'Migut.B00439' => 'egut', 'Migut.L01476' => 'egut', 'Migut.N01147' => 'egut', 'MSTRG.16686' => 'ama', 'MSTRG.27758' => 'ama', 'MSTRG.5323' => 'ama', 'MSTRG.577' => 'ama', 'MSTRG.7915' => 'ama', 'Nitab4.5_0000354g0080' => 'nta', 'Nitab4.5_0000885g0060' => 'nta', 'Nitab4.5_0002255g0040' => 'nta', 'Nitab4.5_0007943g0010' => 'nta', 'Nn1g05642' => 'nnu', 'Nn4g22680' => 'nnu', 'Nn5g29817' => 'nnu', 'Oeu038169.3' => 'oeu', 'Oeu038612.1' => 'oeu', 'Oeu040884.1' => 'oeu', 'Os01g0970500' => 'osa', 'Os05g0107700' => 'osa', 'Os06g0474866' => 'osa', 'Os06g0498400' => 'osa', 'Peaxi162Scf00160g00913' => 'pax', 'Peaxi162Scf00515g00133' => 'pax', 'PGR042G3224' => 'pgr', 'PGR119G2090' => 'pgr', 'PGSC0003DMG400002052' => 'stu', 'PGSC0003DMG400007677' => 'stu', 'Phvul.003G062900' => 'pvu', 'Phvul.008G183300' => 'pvu', 'Potri.005G151700' => 'ptr', 'Potri.008G188150' => 'ptr', 'Potri.010G044100' => 'ptr', 'Pp3c15_13540' => 'ppa', 'Pp3c3_11200' => 'ppa', 'Pp3c8_6520' => 'ppa', 'Pp3c8_6536' => 'ppa', 'Pp3c9_10830' => 'ppa', 'PRCOL_00000768' => 'pco', 'PRCOL_00001724' => 'pco', 'PRCOL_00006458' => 'pco', 'Prupe.1G248900' => 'ppe', 'Prupe.1G536100' => 'ppe', 'Prupe.1G536300' => 'ppe', 'Psat0s2399g0160' => 'psa', 'Psat2g064960' => 'psa', 'Psat4g114160' => 'psa', 'Psat4g114200' => 'psa', 'Psat4g114240' => 'psa', 'PSO013G0324' => 'pso', 'PSO063G5092' => 'pso', 'PSO675G6980' => 'pso', 'PSO700G0345' => 'pso', 'PSO761G0276' => 'pso', 'PSO832G0819' => 'pso', 'PSO832G3977' => 'pso', 'QL03p058693' => 'qlo', 'QL09p018643' => 'qlo', 'QL09p018667' => 'qlo', 'RcHm_v2.0_Chr2g0129611' => 'rch', 'RcHm_v2.0_Chr4g0433251' => 'rch', 'RcHm_v2.0_Chr5g0012851' => 'rch', 'RcHm_v2.0_Chr6g0270131' => 'rch', 'RcHm_v2.0_Chr7g0233431' => 'rch', 'RcHm_v2.0_Chr7g0233761' => 'rch', 'RcHm_v2.0_Chr7g0233791' => 'rch', 'RcHm_v2.0_Chr7g0233821' => 'rch', 'RcHm_v2.0_Chr7g0233921' => 'rch', 'RcHm_v2.0_Chr7g0233931' => 'rch', 'RcHm_v2.0_Chr7g0234231' => 'rch', 'RcHm_v2.0_Chr7g0234461' => 'rch', 'RcHm_v2.0_Chr7g0234611' => 'rch', 'RcHm_v2.0_Chr7g0234621' => 'rch', 'Rhsim02G0071900' => 'rsi', 'Rhsim07G0213400' => 'rsi', 'Rhsim07G0213700' => 'rsi', 'Rhsim12G0042000' => 'rsi', 'Rhsim12G0113000' => 'rsi', 'Sabra02G0086900' => 'sbr', 'Sabra05G0119200' => 'sbr', 'Sabra08G0142500' => 'sbr', 'Sabra10G0023900' => 'sbr', 'SalBow2G1604' => 'sbo', 'SalBow3G1925' => 'sbo', 'SalBow6G3832' => 'sbo', 'SalBow6G5818' => 'sbo', 'Sc04g0009380' => 'sci', 'Sed0006405' => 'sed', 'Sed0015347' => 'sed', 'Sed0016266' => 'sed', 'Sed0024840' => 'sed', 'SEGI_00062' => 'sgi', 'SEGI_00676' => 'sgi', 'SEGI_12281' => 'sgi', 'SEGI_25233' => 'sgi', 'SEGI_32317' => 'sgi', 'SEGI_32533' => 'sgi', 'SEGI_33023' => 'sgi', 'SEGI_38232' => 'sgi', 'SEGI_38712' => 'sgi', 'SGA_v2.0_scaffold219G42523' => 'sas', 'SGA_v2.0_scaffold228G43260' => 'sas', 'SGA_v2.0_scaffold337G49194' => 'sas', 'SHI29728' => 'shi', 'SMO069G0004' => 'smo', 'SMO133G0036' => 'smo', 'SMO169G0007' => 'smo', 'SMO347G0598' => 'smo', 'Solyc05g005020.4' => 'sly', 'Solyc12g088030.2' => 'sly', 'Sopen05g001030' => 'spe', 'Sopen12g030060' => 'spe', 'Sp1g09460' => 'spa', 'Sp7g22400' => 'spa', 'Sp7g22430' => 'spa', 'TAR374G1700' => 'tar', 'TAR381G0322' => 'tar', 'TAR622G0036' => 'tar', 'TAR625G0060' => 'tar', 'TAR628G1058' => 'tar', 'THA.LOC104799853' => 'tha', 'THA.LOC104799855' => 'tha', 'THA.LOC104815469' => 'tha', 'THA.LOC104823655' => 'tha', 'Thecc.02G256300' => 'tca', 'Thecc.08G073900' => 'tca', 'Thecc.08G074000' => 'tca', 'Thhalv10006565m.g' => 'esa', 'Thhalv10024230m.g' => 'esa', 'Thhalv10026637m.g' => 'esa', 'TPR.G15622' => 'tpr', 'TPR.G23137' => 'tpr', 'TPR.G38776' => 'tpr', 'TWI09G0135' => 'twi', 'TWI18G0188' => 'twi', 'TWI56G0439' => 'twi', 'TWI73G1055' => 'twi', 'TWI75G1447' => 'twi', 'unitig_22.g6842' => 'ugi', 'unitig_26.g10358' => 'ugi', 'unitig_8.g3420' => 'ugi', 'vmacro01143' => 'vma', 'vmacro04624' => 'vma', 'vmacro04625' => 'vma', 'vmacro04633' => 'vma', 'vmacro04634' => 'vma', 'vmacro04635' => 'vma', 'vmacro16213' => 'vma', 'VMungo0251G0184' => 'vmu', 'VMungo0647G1399' => 'vmu', 'Zm00001eb072320' => 'zma', 'Zm00001eb139900' => 'zma', 'Zm00001eb278140' => 'zma', 'Zm00001eb356100' => 'zma', 'Zm00001eb398390' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001366' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001366' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001366' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001366' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001366', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '457', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p15810' => 'bna', 'A02p12370' => 'bna', 'A03p55290' => 'bna', 'A06p20360' => 'bna', 'A08p03570' => 'bna', 'A08p21460' => 'bna', 'A08p33790' => 'bna', 'A09p64660' => 'bna', 'Aa31LG1G4070' => 'aar', 'Aa31LG4G9540' => 'aar', 'Aa31LG4G9550' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3950' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5579' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2092' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2093' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.756' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3722' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1269' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1797' => 'aag', 'Actinidia03178' => 'ach', 'Actinidia14321' => 'ach', 'Actinidia15071' => 'ach', 'Actinidia19254' => 'ach', 'Actinidia19617' => 'ach', 'Actinidia29656' => 'ach', 'Actinidia37408' => 'ach', 'Actinidia37409' => 'ach', 'Actinidia37410' => 'ach', 'Actinidia37411' => 'ach', 'Ah.01g003970' => 'amhyb', 'Ah.02g130140' => 'amhyb', 'Ah.03g133220' => 'amhyb', 'AL1G21690' => 'aly', 'AL7G28770' => 'aly', 'AL7G28780' => 'aly', 'Aqoxy2G03242' => 'aox', 'Aqoxy3G02840' => 'aox', 'Aqoxy6G00666' => 'aox', 'Aqoxy6G00668_Aqoxy6G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52KDTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8785AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90XW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRNC3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM29ET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU70H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2L19B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8Y0HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T41BVH' => 'arhy', 'AT1G10760' => 'ath', 'AT4G24440' => 'ath', 'AT4G24450' => 'ath', 'ATR0691G175' => 'atr', 'ATR0767G073' => 'atr', 'ATR1152G017' => 'atr', 'Atru.chr11.2087' => 'acertr', 'Atru.chr11.619' => 'acertr', 'Atru.chr13.973' => 'acertr', 'Atru.chr13.974' => 'acertr', 'AUR62005429' => 'cqu', 'AUR62014090' => 'cqu', 'AUR62014838' => 'cqu', 'AUR62017035' => 'cqu', 'BcaB08g37373' => 'bca', 'BcaC04g23602' => 'bca', 'BcaC06g32884' => 'bca', 'BcaC06g34403' => 'bca', 'BcaC07g38588' => 'bca', 'BcaC07g38627' => 'bca', 'BcaC08g43388' => 'bca', 'BcaC09g50867' => 'bca', 'BcaC09g50868' => 'bca', 'BcaNung05637' => 'bca', 'BcaNung06799' => 'bca', 'BolC1t01904H' => 'bol', 'BolC3t20986H' => 'bol', 'BolC3t20989H' => 'bol', 'BolC6t35845H' => 'bol', 'BolC7t43445H' => 'bol', 'BolC7t45851H' => 'bol', 'BolC8t48576H' => 'bol', 'BolC8t49029H' => 'bol', 'BolC8t52392H' => 'bol', 'BolC9t58777H' => 'bol', 'BraA01t01516Z' => 'bra', 'BraA03t14588Z' => 'bra', 'BraA06t23226Z' => 'bra', 'BraA07t27914Z' => 'bra', 'BraA07t30432Z' => 'bra', 'BraA08t34095Z' => 'bra', 'BraA08t35295Z' => 'bra', 'BraA09t41826Z' => 'bra', 'C01p19760' => 'bna', 'C01p31290' => 'bna', 'C01p47940' => 'bna', 'C04p15580' => 'bna', 'C06p07570' => 'bna', 'C07p29060' => 'bna', 'C07p53590' => 'bna', 'C08p13950' => 'bna', 'C08p48530' => 'bna', 'C09p59380' => 'bna', 'CAN.G1104.8' => 'can', 'CAN.G447.9' => 'can', 'CANSAT01G0055' => 'cansat', 'CANSAT25G2801' => 'cansat', 'CANSAT64G0829' => 'cansat', 'CARHR010980' => 'chi', 'CARHR231830' => 'chi', 'CARHR231840' => 'chi', 'Carub.0001s1031' => 'cru', 'Carub.0007s1662' => 'cru', 'Carub.0007s1663' => 'cru', 'Ca_08744_v3' => 'car', 'Ca_22500_v3' => 'car', 'CBR_g12420' => 'cbr', 'CBR_g39013' => 'cbr', 'Cc10_g08370' => 'ccan', 'Cc11_g15490' => 'ccan', 'CDE04G1797' => 'cde', 'CDE04G2323' => 'cde', 'CDE04G3375' => 'cde', 'CDE04G3560' => 'cde', 'CDE06G0295' => 'cde', 'Cfa009191' => 'cfa', 'Ciclev10002917m.g' => 'ccl', 'Ciclev10017434m.g' => 'ccl', 'Ciclev10030499m.g' => 'ccl', 'CiPaw.05G184800' => 'cil', 'CiPaw.07G162800' => 'cil', 'CiPaw.07G162900' => 'cil', 'CiPaw.07G163000' => 'cil', 'CiPaw.08G057200' => 'cil', 'ClCG05G025580' => 'cla', 'ClCG11G014700' => 'cla', 'COL.COLO4_24234' => 'col', 'COL.COLO4_35285' => 'col', 'COL.COLO4_35286' => 'col', 'Cpa.g.sc21.43' => 'cpa', 'Cpa.g.sc69.90' => 'cpa', 'Cre07.g319300' => 'cre', 'Cre07.g319340' => 'cre', 'Cre07.g332300' => 'cre', 'Cre07.g333252' => 'cre', 'Cre08.g363874' => 'cre', 'Cre10.g424150' => 'cre', 'CsaV3_2G033350' => 'csa', 'CsaV3_2G033370' => 'csa', 'CsaV3_5G031320' => 'csa', 'CSS0001204' => 'camsi', 'CSS0005618' => 'camsi', 'CSS0021224' => 'camsi', 'CSS0026904' => 'camsi', 'CSS0027855' => 'camsi', 'CSS0031876' => 'camsi', 'CSS0046721' => 'camsi', 'CSS0046983' => 'camsi', 'CSS0048442' => 'camsi', 'DCAR_006444' => 'dca', 'DCAR_007066' => 'dca', 'DCAR_007067' => 'dca', 'DCAR_029738' => 'dca', 'DCAR_031129' => 'dca', 'Dinv15253' => 'din', 'Dinv24813' => 'din', 'Dinv42590' => 'din', 'Dinv42591' => 'din', 'Duzib041G0019' => 'dzi', 'Duzib041G0627' => 'dzi', 'Duzib116G0949' => 'dzi', 'Duzib268G0758' => 'dzi', 'ECA233G2601' => 'eca', 'ECA234G4650' => 'eca', 'ECA240G3991' => 'eca', 'ECA246G1742' => 'eca', 'EL10Ac6g13726' => 'bvu', 'EL10Ac8g20405' => 'bvu', 'EL10Ac9g20840' => 'bvu', 'Eucgr.F00436' => 'egr', 'Eucgr.H02531' => 'egr', 'FAN04G2369' => 'fan', 'FAN04G2482' => 'fan', 'FAN07G2766' => 'fan', 'FAN12G2701' => 'fan', 'FAN12G3618' => 'fan', 'FAN17G2901' => 'fan', 'FAN18G2982' => 'fan', 'FAN22G0388' => 'fan', 'FvH4_4g25800' => 'fve', 'FvH4_5g34180' => 'fve', 'FvH4_5g34191' => 'fve', 'FvH4_5g34192' => 'fve', 'FvH4_5g34193' => 'fve', 'Glyma.02G216100' => 'gma', 'Glyma.04G096500' => 'gma', 'Glyma.06G098200' => 'gma', 'Glyma.08G283700' => 'gma', 'Glyma.14G183100' => 'gma', 'Glyma.18G142500' => 'gma', 'Gohir.A01G159900' => 'ghi', 'Gohir.A01G159950' => 'ghi', 'Gohir.A05G216400' => 'ghi', 'Gohir.A05G216500' => 'ghi', 'Gohir.A05G264200' => 'ghi', 'Gohir.A12G144350' => 'ghi', 'Gohir.A12G144400' => 'ghi', 'Gohir.D01G150200' => 'ghi', 'Gohir.D05G220900' => 'ghi', 'Gohir.D05G221000' => 'ghi', 'Gohir.D05G266700' => 'ghi', 'Gohir.D12G148950' => 'ghi', 'Gohir.D12G149000' => 'ghi', 'Gorai.002G186200' => 'gra', 'Gorai.008G160400' => 'gra', 'Gorai.009G228000' => 'gra', 'Gorai.009G228100' => 'gra', 'Gorai.009G278800' => 'gra', 'GSVIVG01009213001' => 'vvi', 'GSVIVG01013806001' => 'vvi', 'HanXRQChr03g0063191' => 'han', 'HanXRQChr03g0093361' => 'han', 'HanXRQChr05g0143271' => 'han', 'HanXRQChr09g0264681' => 'han', 'HanXRQChr10g0277741' => 'han', 'HanXRQChr10g0277751' => 'han', 'HanXRQChr11g0353851' => 'han', 'HanXRQChr12g0371851' => 'han', 'HanXRQChr12g0384161' => 'han', 'HanXRQChr17g0547611' => 'han', 'HanXRQChr17g0547621' => 'han', 'Haze_12225' => 'cav', 'Haze_22489' => 'cav', 'Haze_27711' => 'cav', 'Hma1.2p1_0044F.1_g026380' => 'hma', 'Hma1.2p1_0125F.1_g058680' => 'hma', 'Hma1.2p1_0125F.1_g058690' => 'hma', 'Hma1.2p1_0223F.1_g094185' => 'hma', 'Hma1.2p1_0344F.1_g131080' => 'hma', 'Hma1.2p1_1861F.1_g305660' => 'hma', 'HPP92_003084' => 'vpl', 'HPP92_010288' => 'vpl', 'Hund01464' => 'sun', 'Hund06013' => 'sun', 'Hund07854' => 'sun', 'Hund18026' => 'sun', 'Hund25378' => 'sun', 'Hund25379' => 'sun', 'Lalb_Chr08g0242611' => 'lal', 'Lalb_Chr09g0334851' => 'lal', 'Lalb_Chr09g0334861' => 'lal', 'Lalb_Chr09g0334871' => 'lal', 'Lalb_Chr09g0334881' => 'lal', 'Lalb_Chr11g0064851' => 'lal', 'Lalb_Chr16g0392241' => 'lal', 'Lalb_Chr23g0269931' => 'lal', 'Lalb_Chr23g0269941' => 'lal', 'Lj4A85G30' => 'lonja', 'Lj4A85G31' => 'lonja', 'Lj4A85G32' => 'lonja', 'Lj4g0012667' => 'lja', 'Lj6A809T49' => 'lonja', 'Lj6C809G13' => 'lonja', 'LjContig00408g0006754' => 'lja', 'Lsat_1_v5_gn_4_160220' => 'lsa', 'Lsat_1_v5_gn_4_4920' => 'lsa', 'Lsat_1_v5_gn_4_60280' => 'lsa', 'Lsat_1_v5_gn_6_107360' => 'lsa', 'Lsat_1_v5_gn_7_43741' => 'lsa', 'Lsat_1_v5_gn_8_153980' => 'lsa', 'Manes.05G189000' => 'mes', 'Manes.13G026800' => 'mes', 'Manes.18G057000' => 'mes', 'Mapoly0012s0108' => 'mpo', 'Mapoly0038s0029' => 'mpo', 'Mapoly0046s0022' => 'mpo', 'Mapoly0046s0023' => 'mpo', 'Mapoly0067s0078' => 'mpo', 'MBI02_g34989_MAGBIO' => 'mbi', 'MBI05_g39009_MAGBIO' => 'mbi', 'MBI15_g14939_MAGBIO' => 'mbi', 'MBI16_g14597_MAGBIO' => 'mbi', 'MBI16_g27903_MAGBIO' => 'mbi', 'MBI17_g30593_MAGBIO' => 'mbi', 'MBI17_g38829_MAGBIO' => 'mbi', 'MBI19_g32700_MAGBIO' => 'mbi', 'MBI19_g33777_MAGBIO' => 'mbi', 'MCO02G023' => 'mco', 'MCO02G032' => 'mco', 'MCO06G074' => 'mco', 'MCO07G158' => 'mco', 'MCO16G440' => 'mco', 'MD08G1203800' => 'mdo', 'MD08G1203900' => 'mdo', 'MD13G1096800' => 'mdo', 'MD16G1097800' => 'mdo', 'Medtr5g066740' => 'mtr', 'Medtr7g005540' => 'mtr', 'Medtr8g069760' => 'mtr', 'MELO3C008106.2' => 'cme', 'MELO3C011972.2' => 'cme', 'Migut.B00439' => 'egut', 'Migut.L01476' => 'egut', 'Migut.N01147' => 'egut', 'MSTRG.16686' => 'ama', 'MSTRG.27758' => 'ama', 'MSTRG.5323' => 'ama', 'MSTRG.577' => 'ama', 'MSTRG.7915' => 'ama', 'Nitab4.5_0000354g0080' => 'nta', 'Nitab4.5_0000885g0060' => 'nta', 'Nitab4.5_0002255g0040' => 'nta', 'Nitab4.5_0007943g0010' => 'nta', 'Nn1g05642' => 'nnu', 'Nn4g22680' => 'nnu', 'Nn5g29817' => 'nnu', 'Oeu038169.3' => 'oeu', 'Oeu038612.1' => 'oeu', 'Oeu040884.1' => 'oeu', 'Os01g0970500' => 'osa', 'Os05g0107700' => 'osa', 'Os06g0474866' => 'osa', 'Os06g0498400' => 'osa', 'Peaxi162Scf00160g00913' => 'pax', 'Peaxi162Scf00515g00133' => 'pax', 'PGR042G3224' => 'pgr', 'PGR119G2090' => 'pgr', 'PGSC0003DMG400002052' => 'stu', 'PGSC0003DMG400007677' => 'stu', 'Phvul.003G062900' => 'pvu', 'Phvul.008G183300' => 'pvu', 'Potri.005G151700' => 'ptr', 'Potri.008G188150' => 'ptr', 'Potri.010G044100' => 'ptr', 'Pp3c15_13540' => 'ppa', 'Pp3c3_11200' => 'ppa', 'Pp3c8_6520' => 'ppa', 'Pp3c8_6536' => 'ppa', 'Pp3c9_10830' => 'ppa', 'PRCOL_00000768' => 'pco', 'PRCOL_00001724' => 'pco', 'PRCOL_00006458' => 'pco', 'Prupe.1G248900' => 'ppe', 'Prupe.1G536100' => 'ppe', 'Prupe.1G536300' => 'ppe', 'Psat0s2399g0160' => 'psa', 'Psat2g064960' => 'psa', 'Psat4g114160' => 'psa', 'Psat4g114200' => 'psa', 'Psat4g114240' => 'psa', 'PSO013G0324' => 'pso', 'PSO063G5092' => 'pso', 'PSO675G6980' => 'pso', 'PSO700G0345' => 'pso', 'PSO761G0276' => 'pso', 'PSO832G0819' => 'pso', 'PSO832G3977' => 'pso', 'QL03p058693' => 'qlo', 'QL09p018643' => 'qlo', 'QL09p018667' => 'qlo', 'RcHm_v2.0_Chr2g0129611' => 'rch', 'RcHm_v2.0_Chr4g0433251' => 'rch', 'RcHm_v2.0_Chr5g0012851' => 'rch', 'RcHm_v2.0_Chr6g0270131' => 'rch', 'RcHm_v2.0_Chr7g0233431' => 'rch', 'RcHm_v2.0_Chr7g0233761' => 'rch', 'RcHm_v2.0_Chr7g0233791' => 'rch', 'RcHm_v2.0_Chr7g0233821' => 'rch', 'RcHm_v2.0_Chr7g0233921' => 'rch', 'RcHm_v2.0_Chr7g0233931' => 'rch', 'RcHm_v2.0_Chr7g0234231' => 'rch', 'RcHm_v2.0_Chr7g0234461' => 'rch', 'RcHm_v2.0_Chr7g0234611' => 'rch', 'RcHm_v2.0_Chr7g0234621' => 'rch', 'Rhsim02G0071900' => 'rsi', 'Rhsim07G0213400' => 'rsi', 'Rhsim07G0213700' => 'rsi', 'Rhsim12G0042000' => 'rsi', 'Rhsim12G0113000' => 'rsi', 'Sabra02G0086900' => 'sbr', 'Sabra05G0119200' => 'sbr', 'Sabra08G0142500' => 'sbr', 'Sabra10G0023900' => 'sbr', 'SalBow2G1604' => 'sbo', 'SalBow3G1925' => 'sbo', 'SalBow6G3832' => 'sbo', 'SalBow6G5818' => 'sbo', 'Sc04g0009380' => 'sci', 'Sed0006405' => 'sed', 'Sed0015347' => 'sed', 'Sed0016266' => 'sed', 'Sed0024840' => 'sed', 'SEGI_00062' => 'sgi', 'SEGI_00676' => 'sgi', 'SEGI_12281' => 'sgi', 'SEGI_25233' => 'sgi', 'SEGI_32317' => 'sgi', 'SEGI_32533' => 'sgi', 'SEGI_33023' => 'sgi', 'SEGI_38232' => 'sgi', 'SEGI_38712' => 'sgi', 'SGA_v2.0_scaffold219G42523' => 'sas', 'SGA_v2.0_scaffold228G43260' => 'sas', 'SGA_v2.0_scaffold337G49194' => 'sas', 'SHI29728' => 'shi', 'SMO069G0004' => 'smo', 'SMO133G0036' => 'smo', 'SMO169G0007' => 'smo', 'SMO347G0598' => 'smo', 'Solyc05g005020.4' => 'sly', 'Solyc12g088030.2' => 'sly', 'Sopen05g001030' => 'spe', 'Sopen12g030060' => 'spe', 'Sp1g09460' => 'spa', 'Sp7g22400' => 'spa', 'Sp7g22430' => 'spa', 'TAR374G1700' => 'tar', 'TAR381G0322' => 'tar', 'TAR622G0036' => 'tar', 'TAR625G0060' => 'tar', 'TAR628G1058' => 'tar', 'THA.LOC104799853' => 'tha', 'THA.LOC104799855' => 'tha', 'THA.LOC104815469' => 'tha', 'THA.LOC104823655' => 'tha', 'Thecc.02G256300' => 'tca', 'Thecc.08G073900' => 'tca', 'Thecc.08G074000' => 'tca', 'Thhalv10006565m.g' => 'esa', 'Thhalv10024230m.g' => 'esa', 'Thhalv10026637m.g' => 'esa', 'TPR.G15622' => 'tpr', 'TPR.G23137' => 'tpr', 'TPR.G38776' => 'tpr', 'TWI09G0135' => 'twi', 'TWI18G0188' => 'twi', 'TWI56G0439' => 'twi', 'TWI73G1055' => 'twi', 'TWI75G1447' => 'twi', 'unitig_22.g6842' => 'ugi', 'unitig_26.g10358' => 'ugi', 'unitig_8.g3420' => 'ugi', 'vmacro01143' => 'vma', 'vmacro04624' => 'vma', 'vmacro04625' => 'vma', 'vmacro04633' => 'vma', 'vmacro04634' => 'vma', 'vmacro04635' => 'vma', 'vmacro16213' => 'vma', 'VMungo0251G0184' => 'vmu', 'VMungo0647G1399' => 'vmu', 'Zm00001eb072320' => 'zma', 'Zm00001eb139900' => 'zma', 'Zm00001eb278140' => 'zma', 'Zm00001eb356100' => 'zma', 'Zm00001eb398390' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001366', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001366' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001366', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '457', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001366' ) ), 'genes' => array( 'A01p15810' => 'bna', 'A02p12370' => 'bna', 'A03p55290' => 'bna', 'A06p20360' => 'bna', 'A08p03570' => 'bna', 'A08p21460' => 'bna', 'A08p33790' => 'bna', 'A09p64660' => 'bna', 'Aa31LG1G4070' => 'aar', 'Aa31LG4G9540' => 'aar', 'Aa31LG4G9550' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3950' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5579' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2092' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2093' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.756' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3722' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1269' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1797' => 'aag', 'Actinidia03178' => 'ach', 'Actinidia14321' => 'ach', 'Actinidia15071' => 'ach', 'Actinidia19254' => 'ach', 'Actinidia19617' => 'ach', 'Actinidia29656' => 'ach', 'Actinidia37408' => 'ach', 'Actinidia37409' => 'ach', 'Actinidia37410' => 'ach', 'Actinidia37411' => 'ach', 'Ah.01g003970' => 'amhyb', 'Ah.02g130140' => 'amhyb', 'Ah.03g133220' => 'amhyb', 'AL1G21690' => 'aly', 'AL7G28770' => 'aly', 'AL7G28780' => 'aly', 'Aqoxy2G03242' => 'aox', 'Aqoxy3G02840' => 'aox', 'Aqoxy6G00666' => 'aox', 'Aqoxy6G00668_Aqoxy6G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52KDTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8785AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90XW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRNC3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM29ET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU70H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2L19B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8Y0HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T41BVH' => 'arhy', 'AT1G10760' => 'ath', 'AT4G24440' => 'ath', 'AT4G24450' => 'ath', 'ATR0691G175' => 'atr', 'ATR0767G073' => 'atr', 'ATR1152G017' => 'atr', 'Atru.chr11.2087' => 'acertr', 'Atru.chr11.619' => 'acertr', 'Atru.chr13.973' => 'acertr', 'Atru.chr13.974' => 'acertr', 'AUR62005429' => 'cqu', 'AUR62014090' => 'cqu', 'AUR62014838' => 'cqu', 'AUR62017035' => 'cqu', 'BcaB08g37373' => 'bca', 'BcaC04g23602' => 'bca', 'BcaC06g32884' => 'bca', 'BcaC06g34403' => 'bca', 'BcaC07g38588' => 'bca', 'BcaC07g38627' => 'bca', 'BcaC08g43388' => 'bca', 'BcaC09g50867' => 'bca', 'BcaC09g50868' => 'bca', 'BcaNung05637' => 'bca', 'BcaNung06799' => 'bca', 'BolC1t01904H' => 'bol', 'BolC3t20986H' => 'bol', 'BolC3t20989H' => 'bol', 'BolC6t35845H' => 'bol', 'BolC7t43445H' => 'bol', 'BolC7t45851H' => 'bol', 'BolC8t48576H' => 'bol', 'BolC8t49029H' => 'bol', 'BolC8t52392H' => 'bol', 'BolC9t58777H' => 'bol', 'BraA01t01516Z' => 'bra', 'BraA03t14588Z' => 'bra', 'BraA06t23226Z' => 'bra', 'BraA07t27914Z' => 'bra', 'BraA07t30432Z' => 'bra', 'BraA08t34095Z' => 'bra', 'BraA08t35295Z' => 'bra', 'BraA09t41826Z' => 'bra', 'C01p19760' => 'bna', 'C01p31290' => 'bna', 'C01p47940' => 'bna', 'C04p15580' => 'bna', 'C06p07570' => 'bna', 'C07p29060' => 'bna', 'C07p53590' => 'bna', 'C08p13950' => 'bna', 'C08p48530' => 'bna', 'C09p59380' => 'bna', 'CAN.G1104.8' => 'can', 'CAN.G447.9' => 'can', 'CANSAT01G0055' => 'cansat', 'CANSAT25G2801' => 'cansat', 'CANSAT64G0829' => 'cansat', 'CARHR010980' => 'chi', 'CARHR231830' => 'chi', 'CARHR231840' => 'chi', 'Carub.0001s1031' => 'cru', 'Carub.0007s1662' => 'cru', 'Carub.0007s1663' => 'cru', 'Ca_08744_v3' => 'car', 'Ca_22500_v3' => 'car', 'CBR_g12420' => 'cbr', 'CBR_g39013' => 'cbr', 'Cc10_g08370' => 'ccan', 'Cc11_g15490' => 'ccan', 'CDE04G1797' => 'cde', 'CDE04G2323' => 'cde', 'CDE04G3375' => 'cde', 'CDE04G3560' => 'cde', 'CDE06G0295' => 'cde', 'Cfa009191' => 'cfa', 'Ciclev10002917m.g' => 'ccl', 'Ciclev10017434m.g' => 'ccl', 'Ciclev10030499m.g' => 'ccl', 'CiPaw.05G184800' => 'cil', 'CiPaw.07G162800' => 'cil', 'CiPaw.07G162900' => 'cil', 'CiPaw.07G163000' => 'cil', 'CiPaw.08G057200' => 'cil', 'ClCG05G025580' => 'cla', 'ClCG11G014700' => 'cla', 'COL.COLO4_24234' => 'col', 'COL.COLO4_35285' => 'col', 'COL.COLO4_35286' => 'col', 'Cpa.g.sc21.43' => 'cpa', 'Cpa.g.sc69.90' => 'cpa', 'Cre07.g319300' => 'cre', 'Cre07.g319340' => 'cre', 'Cre07.g332300' => 'cre', 'Cre07.g333252' => 'cre', 'Cre08.g363874' => 'cre', 'Cre10.g424150' => 'cre', 'CsaV3_2G033350' => 'csa', 'CsaV3_2G033370' => 'csa', 'CsaV3_5G031320' => 'csa', 'CSS0001204' => 'camsi', 'CSS0005618' => 'camsi', 'CSS0021224' => 'camsi', 'CSS0026904' => 'camsi', 'CSS0027855' => 'camsi', 'CSS0031876' => 'camsi', 'CSS0046721' => 'camsi', 'CSS0046983' => 'camsi', 'CSS0048442' => 'camsi', 'DCAR_006444' => 'dca', 'DCAR_007066' => 'dca', 'DCAR_007067' => 'dca', 'DCAR_029738' => 'dca', 'DCAR_031129' => 'dca', 'Dinv15253' => 'din', 'Dinv24813' => 'din', 'Dinv42590' => 'din', 'Dinv42591' => 'din', 'Duzib041G0019' => 'dzi', 'Duzib041G0627' => 'dzi', 'Duzib116G0949' => 'dzi', 'Duzib268G0758' => 'dzi', 'ECA233G2601' => 'eca', 'ECA234G4650' => 'eca', 'ECA240G3991' => 'eca', 'ECA246G1742' => 'eca', 'EL10Ac6g13726' => 'bvu', 'EL10Ac8g20405' => 'bvu', 'EL10Ac9g20840' => 'bvu', 'Eucgr.F00436' => 'egr', 'Eucgr.H02531' => 'egr', 'FAN04G2369' => 'fan', 'FAN04G2482' => 'fan', 'FAN07G2766' => 'fan', 'FAN12G2701' => 'fan', 'FAN12G3618' => 'fan', 'FAN17G2901' => 'fan', 'FAN18G2982' => 'fan', 'FAN22G0388' => 'fan', 'FvH4_4g25800' => 'fve', 'FvH4_5g34180' => 'fve', 'FvH4_5g34191' => 'fve', 'FvH4_5g34192' => 'fve', 'FvH4_5g34193' => 'fve', 'Glyma.02G216100' => 'gma', 'Glyma.04G096500' => 'gma', 'Glyma.06G098200' => 'gma', 'Glyma.08G283700' => 'gma', 'Glyma.14G183100' => 'gma', 'Glyma.18G142500' => 'gma', 'Gohir.A01G159900' => 'ghi', 'Gohir.A01G159950' => 'ghi', 'Gohir.A05G216400' => 'ghi', 'Gohir.A05G216500' => 'ghi', 'Gohir.A05G264200' => 'ghi', 'Gohir.A12G144350' => 'ghi', 'Gohir.A12G144400' => 'ghi', 'Gohir.D01G150200' => 'ghi', 'Gohir.D05G220900' => 'ghi', 'Gohir.D05G221000' => 'ghi', 'Gohir.D05G266700' => 'ghi', 'Gohir.D12G148950' => 'ghi', 'Gohir.D12G149000' => 'ghi', 'Gorai.002G186200' => 'gra', 'Gorai.008G160400' => 'gra', 'Gorai.009G228000' => 'gra', 'Gorai.009G228100' => 'gra', 'Gorai.009G278800' => 'gra', 'GSVIVG01009213001' => 'vvi', 'GSVIVG01013806001' => 'vvi', 'HanXRQChr03g0063191' => 'han', 'HanXRQChr03g0093361' => 'han', 'HanXRQChr05g0143271' => 'han', 'HanXRQChr09g0264681' => 'han', 'HanXRQChr10g0277741' => 'han', 'HanXRQChr10g0277751' => 'han', 'HanXRQChr11g0353851' => 'han', 'HanXRQChr12g0371851' => 'han', 'HanXRQChr12g0384161' => 'han', 'HanXRQChr17g0547611' => 'han', 'HanXRQChr17g0547621' => 'han', 'Haze_12225' => 'cav', 'Haze_22489' => 'cav', 'Haze_27711' => 'cav', 'Hma1.2p1_0044F.1_g026380' => 'hma', 'Hma1.2p1_0125F.1_g058680' => 'hma', 'Hma1.2p1_0125F.1_g058690' => 'hma', 'Hma1.2p1_0223F.1_g094185' => 'hma', 'Hma1.2p1_0344F.1_g131080' => 'hma', 'Hma1.2p1_1861F.1_g305660' => 'hma', 'HPP92_003084' => 'vpl', 'HPP92_010288' => 'vpl', 'Hund01464' => 'sun', 'Hund06013' => 'sun', 'Hund07854' => 'sun', 'Hund18026' => 'sun', 'Hund25378' => 'sun', 'Hund25379' => 'sun', 'Lalb_Chr08g0242611' => 'lal', 'Lalb_Chr09g0334851' => 'lal', 'Lalb_Chr09g0334861' => 'lal', 'Lalb_Chr09g0334871' => 'lal', 'Lalb_Chr09g0334881' => 'lal', 'Lalb_Chr11g0064851' => 'lal', 'Lalb_Chr16g0392241' => 'lal', 'Lalb_Chr23g0269931' => 'lal', 'Lalb_Chr23g0269941' => 'lal', 'Lj4A85G30' => 'lonja', 'Lj4A85G31' => 'lonja', 'Lj4A85G32' => 'lonja', 'Lj4g0012667' => 'lja', 'Lj6A809T49' => 'lonja', 'Lj6C809G13' => 'lonja', 'LjContig00408g0006754' => 'lja', 'Lsat_1_v5_gn_4_160220' => 'lsa', 'Lsat_1_v5_gn_4_4920' => 'lsa', 'Lsat_1_v5_gn_4_60280' => 'lsa', 'Lsat_1_v5_gn_6_107360' => 'lsa', 'Lsat_1_v5_gn_7_43741' => 'lsa', 'Lsat_1_v5_gn_8_153980' => 'lsa', 'Manes.05G189000' => 'mes', 'Manes.13G026800' => 'mes', 'Manes.18G057000' => 'mes', 'Mapoly0012s0108' => 'mpo', 'Mapoly0038s0029' => 'mpo', 'Mapoly0046s0022' => 'mpo', 'Mapoly0046s0023' => 'mpo', 'Mapoly0067s0078' => 'mpo', 'MBI02_g34989_MAGBIO' => 'mbi', 'MBI05_g39009_MAGBIO' => 'mbi', 'MBI15_g14939_MAGBIO' => 'mbi', 'MBI16_g14597_MAGBIO' => 'mbi', 'MBI16_g27903_MAGBIO' => 'mbi', 'MBI17_g30593_MAGBIO' => 'mbi', 'MBI17_g38829_MAGBIO' => 'mbi', 'MBI19_g32700_MAGBIO' => 'mbi', 'MBI19_g33777_MAGBIO' => 'mbi', 'MCO02G023' => 'mco', 'MCO02G032' => 'mco', 'MCO06G074' => 'mco', 'MCO07G158' => 'mco', 'MCO16G440' => 'mco', 'MD08G1203800' => 'mdo', 'MD08G1203900' => 'mdo', 'MD13G1096800' => 'mdo', 'MD16G1097800' => 'mdo', 'Medtr5g066740' => 'mtr', 'Medtr7g005540' => 'mtr', 'Medtr8g069760' => 'mtr', 'MELO3C008106.2' => 'cme', 'MELO3C011972.2' => 'cme', 'Migut.B00439' => 'egut', 'Migut.L01476' => 'egut', 'Migut.N01147' => 'egut', 'MSTRG.16686' => 'ama', 'MSTRG.27758' => 'ama', 'MSTRG.5323' => 'ama', 'MSTRG.577' => 'ama', 'MSTRG.7915' => 'ama', 'Nitab4.5_0000354g0080' => 'nta', 'Nitab4.5_0000885g0060' => 'nta', 'Nitab4.5_0002255g0040' => 'nta', 'Nitab4.5_0007943g0010' => 'nta', 'Nn1g05642' => 'nnu', 'Nn4g22680' => 'nnu', 'Nn5g29817' => 'nnu', 'Oeu038169.3' => 'oeu', 'Oeu038612.1' => 'oeu', 'Oeu040884.1' => 'oeu', 'Os01g0970500' => 'osa', 'Os05g0107700' => 'osa', 'Os06g0474866' => 'osa', 'Os06g0498400' => 'osa', 'Peaxi162Scf00160g00913' => 'pax', 'Peaxi162Scf00515g00133' => 'pax', 'PGR042G3224' => 'pgr', 'PGR119G2090' => 'pgr', 'PGSC0003DMG400002052' => 'stu', 'PGSC0003DMG400007677' => 'stu', 'Phvul.003G062900' => 'pvu', 'Phvul.008G183300' => 'pvu', 'Potri.005G151700' => 'ptr', 'Potri.008G188150' => 'ptr', 'Potri.010G044100' => 'ptr', 'Pp3c15_13540' => 'ppa', 'Pp3c3_11200' => 'ppa', 'Pp3c8_6520' => 'ppa', 'Pp3c8_6536' => 'ppa', 'Pp3c9_10830' => 'ppa', 'PRCOL_00000768' => 'pco', 'PRCOL_00001724' => 'pco', 'PRCOL_00006458' => 'pco', 'Prupe.1G248900' => 'ppe', 'Prupe.1G536100' => 'ppe', 'Prupe.1G536300' => 'ppe', 'Psat0s2399g0160' => 'psa', 'Psat2g064960' => 'psa', 'Psat4g114160' => 'psa', 'Psat4g114200' => 'psa', 'Psat4g114240' => 'psa', 'PSO013G0324' => 'pso', 'PSO063G5092' => 'pso', 'PSO675G6980' => 'pso', 'PSO700G0345' => 'pso', 'PSO761G0276' => 'pso', 'PSO832G0819' => 'pso', 'PSO832G3977' => 'pso', 'QL03p058693' => 'qlo', 'QL09p018643' => 'qlo', 'QL09p018667' => 'qlo', 'RcHm_v2.0_Chr2g0129611' => 'rch', 'RcHm_v2.0_Chr4g0433251' => 'rch', 'RcHm_v2.0_Chr5g0012851' => 'rch', 'RcHm_v2.0_Chr6g0270131' => 'rch', 'RcHm_v2.0_Chr7g0233431' => 'rch', 'RcHm_v2.0_Chr7g0233761' => 'rch', 'RcHm_v2.0_Chr7g0233791' => 'rch', 'RcHm_v2.0_Chr7g0233821' => 'rch', 'RcHm_v2.0_Chr7g0233921' => 'rch', 'RcHm_v2.0_Chr7g0233931' => 'rch', 'RcHm_v2.0_Chr7g0234231' => 'rch', 'RcHm_v2.0_Chr7g0234461' => 'rch', 'RcHm_v2.0_Chr7g0234611' => 'rch', 'RcHm_v2.0_Chr7g0234621' => 'rch', 'Rhsim02G0071900' => 'rsi', 'Rhsim07G0213400' => 'rsi', 'Rhsim07G0213700' => 'rsi', 'Rhsim12G0042000' => 'rsi', 'Rhsim12G0113000' => 'rsi', 'Sabra02G0086900' => 'sbr', 'Sabra05G0119200' => 'sbr', 'Sabra08G0142500' => 'sbr', 'Sabra10G0023900' => 'sbr', 'SalBow2G1604' => 'sbo', 'SalBow3G1925' => 'sbo', 'SalBow6G3832' => 'sbo', 'SalBow6G5818' => 'sbo', 'Sc04g0009380' => 'sci', 'Sed0006405' => 'sed', 'Sed0015347' => 'sed', 'Sed0016266' => 'sed', 'Sed0024840' => 'sed', 'SEGI_00062' => 'sgi', 'SEGI_00676' => 'sgi', 'SEGI_12281' => 'sgi', 'SEGI_25233' => 'sgi', 'SEGI_32317' => 'sgi', 'SEGI_32533' => 'sgi', 'SEGI_33023' => 'sgi', 'SEGI_38232' => 'sgi', 'SEGI_38712' => 'sgi', 'SGA_v2.0_scaffold219G42523' => 'sas', 'SGA_v2.0_scaffold228G43260' => 'sas', 'SGA_v2.0_scaffold337G49194' => 'sas', 'SHI29728' => 'shi', 'SMO069G0004' => 'smo', 'SMO133G0036' => 'smo', 'SMO169G0007' => 'smo', 'SMO347G0598' => 'smo', 'Solyc05g005020.4' => 'sly', 'Solyc12g088030.2' => 'sly', 'Sopen05g001030' => 'spe', 'Sopen12g030060' => 'spe', 'Sp1g09460' => 'spa', 'Sp7g22400' => 'spa', 'Sp7g22430' => 'spa', 'TAR374G1700' => 'tar', 'TAR381G0322' => 'tar', 'TAR622G0036' => 'tar', 'TAR625G0060' => 'tar', 'TAR628G1058' => 'tar', 'THA.LOC104799853' => 'tha', 'THA.LOC104799855' => 'tha', 'THA.LOC104815469' => 'tha', 'THA.LOC104823655' => 'tha', 'Thecc.02G256300' => 'tca', 'Thecc.08G073900' => 'tca', 'Thecc.08G074000' => 'tca', 'Thhalv10006565m.g' => 'esa', 'Thhalv10024230m.g' => 'esa', 'Thhalv10026637m.g' => 'esa', 'TPR.G15622' => 'tpr', 'TPR.G23137' => 'tpr', 'TPR.G38776' => 'tpr', 'TWI09G0135' => 'twi', 'TWI18G0188' => 'twi', 'TWI56G0439' => 'twi', 'TWI73G1055' => 'twi', 'TWI75G1447' => 'twi', 'unitig_22.g6842' => 'ugi', 'unitig_26.g10358' => 'ugi', 'unitig_8.g3420' => 'ugi', 'vmacro01143' => 'vma', 'vmacro04624' => 'vma', 'vmacro04625' => 'vma', 'vmacro04633' => 'vma', 'vmacro04634' => 'vma', 'vmacro04635' => 'vma', 'vmacro16213' => 'vma', 'VMungo0251G0184' => 'vmu', 'VMungo0647G1399' => 'vmu', 'Zm00001eb072320' => 'zma', 'Zm00001eb139900' => 'zma', 'Zm00001eb278140' => 'zma', 'Zm00001eb356100' => 'zma', 'Zm00001eb398390' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001366' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001366' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001366' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001366' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001366', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '457', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p15810' => 'bna', 'A02p12370' => 'bna', 'A03p55290' => 'bna', 'A06p20360' => 'bna', 'A08p03570' => 'bna', 'A08p21460' => 'bna', 'A08p33790' => 'bna', 'A09p64660' => 'bna', 'Aa31LG1G4070' => 'aar', 'Aa31LG4G9540' => 'aar', 'Aa31LG4G9550' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3950' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5579' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2092' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2093' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.756' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3722' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1269' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1797' => 'aag', 'Actinidia03178' => 'ach', 'Actinidia14321' => 'ach', 'Actinidia15071' => 'ach', 'Actinidia19254' => 'ach', 'Actinidia19617' => 'ach', 'Actinidia29656' => 'ach', 'Actinidia37408' => 'ach', 'Actinidia37409' => 'ach', 'Actinidia37410' => 'ach', 'Actinidia37411' => 'ach', 'Ah.01g003970' => 'amhyb', 'Ah.02g130140' => 'amhyb', 'Ah.03g133220' => 'amhyb', 'AL1G21690' => 'aly', 'AL7G28770' => 'aly', 'AL7G28780' => 'aly', 'Aqoxy2G03242' => 'aox', 'Aqoxy3G02840' => 'aox', 'Aqoxy6G00666' => 'aox', 'Aqoxy6G00668_Aqoxy6G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52KDTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8785AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90XW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRNC3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM29ET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU70H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2L19B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8Y0HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T41BVH' => 'arhy', 'AT1G10760' => 'ath', 'AT4G24440' => 'ath', 'AT4G24450' => 'ath', 'ATR0691G175' => 'atr', 'ATR0767G073' => 'atr', 'ATR1152G017' => 'atr', 'Atru.chr11.2087' => 'acertr', 'Atru.chr11.619' => 'acertr', 'Atru.chr13.973' => 'acertr', 'Atru.chr13.974' => 'acertr', 'AUR62005429' => 'cqu', 'AUR62014090' => 'cqu', 'AUR62014838' => 'cqu', 'AUR62017035' => 'cqu', 'BcaB08g37373' => 'bca', 'BcaC04g23602' => 'bca', 'BcaC06g32884' => 'bca', 'BcaC06g34403' => 'bca', 'BcaC07g38588' => 'bca', 'BcaC07g38627' => 'bca', 'BcaC08g43388' => 'bca', 'BcaC09g50867' => 'bca', 'BcaC09g50868' => 'bca', 'BcaNung05637' => 'bca', 'BcaNung06799' => 'bca', 'BolC1t01904H' => 'bol', 'BolC3t20986H' => 'bol', 'BolC3t20989H' => 'bol', 'BolC6t35845H' => 'bol', 'BolC7t43445H' => 'bol', 'BolC7t45851H' => 'bol', 'BolC8t48576H' => 'bol', 'BolC8t49029H' => 'bol', 'BolC8t52392H' => 'bol', 'BolC9t58777H' => 'bol', 'BraA01t01516Z' => 'bra', 'BraA03t14588Z' => 'bra', 'BraA06t23226Z' => 'bra', 'BraA07t27914Z' => 'bra', 'BraA07t30432Z' => 'bra', 'BraA08t34095Z' => 'bra', 'BraA08t35295Z' => 'bra', 'BraA09t41826Z' => 'bra', 'C01p19760' => 'bna', 'C01p31290' => 'bna', 'C01p47940' => 'bna', 'C04p15580' => 'bna', 'C06p07570' => 'bna', 'C07p29060' => 'bna', 'C07p53590' => 'bna', 'C08p13950' => 'bna', 'C08p48530' => 'bna', 'C09p59380' => 'bna', 'CAN.G1104.8' => 'can', 'CAN.G447.9' => 'can', 'CANSAT01G0055' => 'cansat', 'CANSAT25G2801' => 'cansat', 'CANSAT64G0829' => 'cansat', 'CARHR010980' => 'chi', 'CARHR231830' => 'chi', 'CARHR231840' => 'chi', 'Carub.0001s1031' => 'cru', 'Carub.0007s1662' => 'cru', 'Carub.0007s1663' => 'cru', 'Ca_08744_v3' => 'car', 'Ca_22500_v3' => 'car', 'CBR_g12420' => 'cbr', 'CBR_g39013' => 'cbr', 'Cc10_g08370' => 'ccan', 'Cc11_g15490' => 'ccan', 'CDE04G1797' => 'cde', 'CDE04G2323' => 'cde', 'CDE04G3375' => 'cde', 'CDE04G3560' => 'cde', 'CDE06G0295' => 'cde', 'Cfa009191' => 'cfa', 'Ciclev10002917m.g' => 'ccl', 'Ciclev10017434m.g' => 'ccl', 'Ciclev10030499m.g' => 'ccl', 'CiPaw.05G184800' => 'cil', 'CiPaw.07G162800' => 'cil', 'CiPaw.07G162900' => 'cil', 'CiPaw.07G163000' => 'cil', 'CiPaw.08G057200' => 'cil', 'ClCG05G025580' => 'cla', 'ClCG11G014700' => 'cla', 'COL.COLO4_24234' => 'col', 'COL.COLO4_35285' => 'col', 'COL.COLO4_35286' => 'col', 'Cpa.g.sc21.43' => 'cpa', 'Cpa.g.sc69.90' => 'cpa', 'Cre07.g319300' => 'cre', 'Cre07.g319340' => 'cre', 'Cre07.g332300' => 'cre', 'Cre07.g333252' => 'cre', 'Cre08.g363874' => 'cre', 'Cre10.g424150' => 'cre', 'CsaV3_2G033350' => 'csa', 'CsaV3_2G033370' => 'csa', 'CsaV3_5G031320' => 'csa', 'CSS0001204' => 'camsi', 'CSS0005618' => 'camsi', 'CSS0021224' => 'camsi', 'CSS0026904' => 'camsi', 'CSS0027855' => 'camsi', 'CSS0031876' => 'camsi', 'CSS0046721' => 'camsi', 'CSS0046983' => 'camsi', 'CSS0048442' => 'camsi', 'DCAR_006444' => 'dca', 'DCAR_007066' => 'dca', 'DCAR_007067' => 'dca', 'DCAR_029738' => 'dca', 'DCAR_031129' => 'dca', 'Dinv15253' => 'din', 'Dinv24813' => 'din', 'Dinv42590' => 'din', 'Dinv42591' => 'din', 'Duzib041G0019' => 'dzi', 'Duzib041G0627' => 'dzi', 'Duzib116G0949' => 'dzi', 'Duzib268G0758' => 'dzi', 'ECA233G2601' => 'eca', 'ECA234G4650' => 'eca', 'ECA240G3991' => 'eca', 'ECA246G1742' => 'eca', 'EL10Ac6g13726' => 'bvu', 'EL10Ac8g20405' => 'bvu', 'EL10Ac9g20840' => 'bvu', 'Eucgr.F00436' => 'egr', 'Eucgr.H02531' => 'egr', 'FAN04G2369' => 'fan', 'FAN04G2482' => 'fan', 'FAN07G2766' => 'fan', 'FAN12G2701' => 'fan', 'FAN12G3618' => 'fan', 'FAN17G2901' => 'fan', 'FAN18G2982' => 'fan', 'FAN22G0388' => 'fan', 'FvH4_4g25800' => 'fve', 'FvH4_5g34180' => 'fve', 'FvH4_5g34191' => 'fve', 'FvH4_5g34192' => 'fve', 'FvH4_5g34193' => 'fve', 'Glyma.02G216100' => 'gma', 'Glyma.04G096500' => 'gma', 'Glyma.06G098200' => 'gma', 'Glyma.08G283700' => 'gma', 'Glyma.14G183100' => 'gma', 'Glyma.18G142500' => 'gma', 'Gohir.A01G159900' => 'ghi', 'Gohir.A01G159950' => 'ghi', 'Gohir.A05G216400' => 'ghi', 'Gohir.A05G216500' => 'ghi', 'Gohir.A05G264200' => 'ghi', 'Gohir.A12G144350' => 'ghi', 'Gohir.A12G144400' => 'ghi', 'Gohir.D01G150200' => 'ghi', 'Gohir.D05G220900' => 'ghi', 'Gohir.D05G221000' => 'ghi', 'Gohir.D05G266700' => 'ghi', 'Gohir.D12G148950' => 'ghi', 'Gohir.D12G149000' => 'ghi', 'Gorai.002G186200' => 'gra', 'Gorai.008G160400' => 'gra', 'Gorai.009G228000' => 'gra', 'Gorai.009G228100' => 'gra', 'Gorai.009G278800' => 'gra', 'GSVIVG01009213001' => 'vvi', 'GSVIVG01013806001' => 'vvi', 'HanXRQChr03g0063191' => 'han', 'HanXRQChr03g0093361' => 'han', 'HanXRQChr05g0143271' => 'han', 'HanXRQChr09g0264681' => 'han', 'HanXRQChr10g0277741' => 'han', 'HanXRQChr10g0277751' => 'han', 'HanXRQChr11g0353851' => 'han', 'HanXRQChr12g0371851' => 'han', 'HanXRQChr12g0384161' => 'han', 'HanXRQChr17g0547611' => 'han', 'HanXRQChr17g0547621' => 'han', 'Haze_12225' => 'cav', 'Haze_22489' => 'cav', 'Haze_27711' => 'cav', 'Hma1.2p1_0044F.1_g026380' => 'hma', 'Hma1.2p1_0125F.1_g058680' => 'hma', 'Hma1.2p1_0125F.1_g058690' => 'hma', 'Hma1.2p1_0223F.1_g094185' => 'hma', 'Hma1.2p1_0344F.1_g131080' => 'hma', 'Hma1.2p1_1861F.1_g305660' => 'hma', 'HPP92_003084' => 'vpl', 'HPP92_010288' => 'vpl', 'Hund01464' => 'sun', 'Hund06013' => 'sun', 'Hund07854' => 'sun', 'Hund18026' => 'sun', 'Hund25378' => 'sun', 'Hund25379' => 'sun', 'Lalb_Chr08g0242611' => 'lal', 'Lalb_Chr09g0334851' => 'lal', 'Lalb_Chr09g0334861' => 'lal', 'Lalb_Chr09g0334871' => 'lal', 'Lalb_Chr09g0334881' => 'lal', 'Lalb_Chr11g0064851' => 'lal', 'Lalb_Chr16g0392241' => 'lal', 'Lalb_Chr23g0269931' => 'lal', 'Lalb_Chr23g0269941' => 'lal', 'Lj4A85G30' => 'lonja', 'Lj4A85G31' => 'lonja', 'Lj4A85G32' => 'lonja', 'Lj4g0012667' => 'lja', 'Lj6A809T49' => 'lonja', 'Lj6C809G13' => 'lonja', 'LjContig00408g0006754' => 'lja', 'Lsat_1_v5_gn_4_160220' => 'lsa', 'Lsat_1_v5_gn_4_4920' => 'lsa', 'Lsat_1_v5_gn_4_60280' => 'lsa', 'Lsat_1_v5_gn_6_107360' => 'lsa', 'Lsat_1_v5_gn_7_43741' => 'lsa', 'Lsat_1_v5_gn_8_153980' => 'lsa', 'Manes.05G189000' => 'mes', 'Manes.13G026800' => 'mes', 'Manes.18G057000' => 'mes', 'Mapoly0012s0108' => 'mpo', 'Mapoly0038s0029' => 'mpo', 'Mapoly0046s0022' => 'mpo', 'Mapoly0046s0023' => 'mpo', 'Mapoly0067s0078' => 'mpo', 'MBI02_g34989_MAGBIO' => 'mbi', 'MBI05_g39009_MAGBIO' => 'mbi', 'MBI15_g14939_MAGBIO' => 'mbi', 'MBI16_g14597_MAGBIO' => 'mbi', 'MBI16_g27903_MAGBIO' => 'mbi', 'MBI17_g30593_MAGBIO' => 'mbi', 'MBI17_g38829_MAGBIO' => 'mbi', 'MBI19_g32700_MAGBIO' => 'mbi', 'MBI19_g33777_MAGBIO' => 'mbi', 'MCO02G023' => 'mco', 'MCO02G032' => 'mco', 'MCO06G074' => 'mco', 'MCO07G158' => 'mco', 'MCO16G440' => 'mco', 'MD08G1203800' => 'mdo', 'MD08G1203900' => 'mdo', 'MD13G1096800' => 'mdo', 'MD16G1097800' => 'mdo', 'Medtr5g066740' => 'mtr', 'Medtr7g005540' => 'mtr', 'Medtr8g069760' => 'mtr', 'MELO3C008106.2' => 'cme', 'MELO3C011972.2' => 'cme', 'Migut.B00439' => 'egut', 'Migut.L01476' => 'egut', 'Migut.N01147' => 'egut', 'MSTRG.16686' => 'ama', 'MSTRG.27758' => 'ama', 'MSTRG.5323' => 'ama', 'MSTRG.577' => 'ama', 'MSTRG.7915' => 'ama', 'Nitab4.5_0000354g0080' => 'nta', 'Nitab4.5_0000885g0060' => 'nta', 'Nitab4.5_0002255g0040' => 'nta', 'Nitab4.5_0007943g0010' => 'nta', 'Nn1g05642' => 'nnu', 'Nn4g22680' => 'nnu', 'Nn5g29817' => 'nnu', 'Oeu038169.3' => 'oeu', 'Oeu038612.1' => 'oeu', 'Oeu040884.1' => 'oeu', 'Os01g0970500' => 'osa', 'Os05g0107700' => 'osa', 'Os06g0474866' => 'osa', 'Os06g0498400' => 'osa', 'Peaxi162Scf00160g00913' => 'pax', 'Peaxi162Scf00515g00133' => 'pax', 'PGR042G3224' => 'pgr', 'PGR119G2090' => 'pgr', 'PGSC0003DMG400002052' => 'stu', 'PGSC0003DMG400007677' => 'stu', 'Phvul.003G062900' => 'pvu', 'Phvul.008G183300' => 'pvu', 'Potri.005G151700' => 'ptr', 'Potri.008G188150' => 'ptr', 'Potri.010G044100' => 'ptr', 'Pp3c15_13540' => 'ppa', 'Pp3c3_11200' => 'ppa', 'Pp3c8_6520' => 'ppa', 'Pp3c8_6536' => 'ppa', 'Pp3c9_10830' => 'ppa', 'PRCOL_00000768' => 'pco', 'PRCOL_00001724' => 'pco', 'PRCOL_00006458' => 'pco', 'Prupe.1G248900' => 'ppe', 'Prupe.1G536100' => 'ppe', 'Prupe.1G536300' => 'ppe', 'Psat0s2399g0160' => 'psa', 'Psat2g064960' => 'psa', 'Psat4g114160' => 'psa', 'Psat4g114200' => 'psa', 'Psat4g114240' => 'psa', 'PSO013G0324' => 'pso', 'PSO063G5092' => 'pso', 'PSO675G6980' => 'pso', 'PSO700G0345' => 'pso', 'PSO761G0276' => 'pso', 'PSO832G0819' => 'pso', 'PSO832G3977' => 'pso', 'QL03p058693' => 'qlo', 'QL09p018643' => 'qlo', 'QL09p018667' => 'qlo', 'RcHm_v2.0_Chr2g0129611' => 'rch', 'RcHm_v2.0_Chr4g0433251' => 'rch', 'RcHm_v2.0_Chr5g0012851' => 'rch', 'RcHm_v2.0_Chr6g0270131' => 'rch', 'RcHm_v2.0_Chr7g0233431' => 'rch', 'RcHm_v2.0_Chr7g0233761' => 'rch', 'RcHm_v2.0_Chr7g0233791' => 'rch', 'RcHm_v2.0_Chr7g0233821' => 'rch', 'RcHm_v2.0_Chr7g0233921' => 'rch', 'RcHm_v2.0_Chr7g0233931' => 'rch', 'RcHm_v2.0_Chr7g0234231' => 'rch', 'RcHm_v2.0_Chr7g0234461' => 'rch', 'RcHm_v2.0_Chr7g0234611' => 'rch', 'RcHm_v2.0_Chr7g0234621' => 'rch', 'Rhsim02G0071900' => 'rsi', 'Rhsim07G0213400' => 'rsi', 'Rhsim07G0213700' => 'rsi', 'Rhsim12G0042000' => 'rsi', 'Rhsim12G0113000' => 'rsi', 'Sabra02G0086900' => 'sbr', 'Sabra05G0119200' => 'sbr', 'Sabra08G0142500' => 'sbr', 'Sabra10G0023900' => 'sbr', 'SalBow2G1604' => 'sbo', 'SalBow3G1925' => 'sbo', 'SalBow6G3832' => 'sbo', 'SalBow6G5818' => 'sbo', 'Sc04g0009380' => 'sci', 'Sed0006405' => 'sed', 'Sed0015347' => 'sed', 'Sed0016266' => 'sed', 'Sed0024840' => 'sed', 'SEGI_00062' => 'sgi', 'SEGI_00676' => 'sgi', 'SEGI_12281' => 'sgi', 'SEGI_25233' => 'sgi', 'SEGI_32317' => 'sgi', 'SEGI_32533' => 'sgi', 'SEGI_33023' => 'sgi', 'SEGI_38232' => 'sgi', 'SEGI_38712' => 'sgi', 'SGA_v2.0_scaffold219G42523' => 'sas', 'SGA_v2.0_scaffold228G43260' => 'sas', 'SGA_v2.0_scaffold337G49194' => 'sas', 'SHI29728' => 'shi', 'SMO069G0004' => 'smo', 'SMO133G0036' => 'smo', 'SMO169G0007' => 'smo', 'SMO347G0598' => 'smo', 'Solyc05g005020.4' => 'sly', 'Solyc12g088030.2' => 'sly', 'Sopen05g001030' => 'spe', 'Sopen12g030060' => 'spe', 'Sp1g09460' => 'spa', 'Sp7g22400' => 'spa', 'Sp7g22430' => 'spa', 'TAR374G1700' => 'tar', 'TAR381G0322' => 'tar', 'TAR622G0036' => 'tar', 'TAR625G0060' => 'tar', 'TAR628G1058' => 'tar', 'THA.LOC104799853' => 'tha', 'THA.LOC104799855' => 'tha', 'THA.LOC104815469' => 'tha', 'THA.LOC104823655' => 'tha', 'Thecc.02G256300' => 'tca', 'Thecc.08G073900' => 'tca', 'Thecc.08G074000' => 'tca', 'Thhalv10006565m.g' => 'esa', 'Thhalv10024230m.g' => 'esa', 'Thhalv10026637m.g' => 'esa', 'TPR.G15622' => 'tpr', 'TPR.G23137' => 'tpr', 'TPR.G38776' => 'tpr', 'TWI09G0135' => 'twi', 'TWI18G0188' => 'twi', 'TWI56G0439' => 'twi', 'TWI73G1055' => 'twi', 'TWI75G1447' => 'twi', 'unitig_22.g6842' => 'ugi', 'unitig_26.g10358' => 'ugi', 'unitig_8.g3420' => 'ugi', 'vmacro01143' => 'vma', 'vmacro04624' => 'vma', 'vmacro04625' => 'vma', 'vmacro04633' => 'vma', 'vmacro04634' => 'vma', 'vmacro04635' => 'vma', 'vmacro16213' => 'vma', 'VMungo0251G0184' => 'vmu', 'VMungo0647G1399' => 'vmu', 'Zm00001eb072320' => 'zma', 'Zm00001eb139900' => 'zma', 'Zm00001eb278140' => 'zma', 'Zm00001eb356100' => 'zma', 'Zm00001eb398390' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001366', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001366' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001366', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '457', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001366' ) ), 'genes' => array( 'A01p15810' => 'bna', 'A02p12370' => 'bna', 'A03p55290' => 'bna', 'A06p20360' => 'bna', 'A08p03570' => 'bna', 'A08p21460' => 'bna', 'A08p33790' => 'bna', 'A09p64660' => 'bna', 'Aa31LG1G4070' => 'aar', 'Aa31LG4G9540' => 'aar', 'Aa31LG4G9550' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3950' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5579' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2092' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2093' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.756' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3722' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.4' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.5' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1269' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1797' => 'aag', 'Actinidia03178' => 'ach', 'Actinidia14321' => 'ach', 'Actinidia15071' => 'ach', 'Actinidia19254' => 'ach', 'Actinidia19617' => 'ach', 'Actinidia29656' => 'ach', 'Actinidia37408' => 'ach', 'Actinidia37409' => 'ach', 'Actinidia37410' => 'ach', 'Actinidia37411' => 'ach', 'Ah.01g003970' => 'amhyb', 'Ah.02g130140' => 'amhyb', 'Ah.03g133220' => 'amhyb', 'AL1G21690' => 'aly', 'AL7G28770' => 'aly', 'AL7G28780' => 'aly', 'Aqoxy2G03242' => 'aox', 'Aqoxy3G02840' => 'aox', 'Aqoxy6G00666' => 'aox', 'Aqoxy6G00668_Aqoxy6G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.52KDTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8785AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90XW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRNC3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM29ET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU70H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2L19B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8Y0HW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T41BVH' => 'arhy', 'AT1G10760' => 'ath', 'AT4G24440' => 'ath', 'AT4G24450' => 'ath', 'ATR0691G175' => 'atr', 'ATR0767G073' => 'atr', 'ATR1152G017' => 'atr', 'Atru.chr11.2087' => 'acertr', 'Atru.chr11.619' => 'acertr', 'Atru.chr13.973' => 'acertr', 'Atru.chr13.974' => 'acertr', 'AUR62005429' => 'cqu', 'AUR62014090' => 'cqu', 'AUR62014838' => 'cqu', 'AUR62017035' => 'cqu', 'BcaB08g37373' => 'bca', 'BcaC04g23602' => 'bca', 'BcaC06g32884' => 'bca', 'BcaC06g34403' => 'bca', 'BcaC07g38588' => 'bca', 'BcaC07g38627' => 'bca', 'BcaC08g43388' => 'bca', 'BcaC09g50867' => 'bca', 'BcaC09g50868' => 'bca', 'BcaNung05637' => 'bca', 'BcaNung06799' => 'bca', 'BolC1t01904H' => 'bol', 'BolC3t20986H' => 'bol', 'BolC3t20989H' => 'bol', 'BolC6t35845H' => 'bol', 'BolC7t43445H' => 'bol', 'BolC7t45851H' => 'bol', 'BolC8t48576H' => 'bol', 'BolC8t49029H' => 'bol', 'BolC8t52392H' => 'bol', 'BolC9t58777H' => 'bol', 'BraA01t01516Z' => 'bra', 'BraA03t14588Z' => 'bra', 'BraA06t23226Z' => 'bra', 'BraA07t27914Z' => 'bra', 'BraA07t30432Z' => 'bra', 'BraA08t34095Z' => 'bra', 'BraA08t35295Z' => 'bra', 'BraA09t41826Z' => 'bra', 'C01p19760' => 'bna', 'C01p31290' => 'bna', 'C01p47940' => 'bna', 'C04p15580' => 'bna', 'C06p07570' => 'bna', 'C07p29060' => 'bna', 'C07p53590' => 'bna', 'C08p13950' => 'bna', 'C08p48530' => 'bna', 'C09p59380' => 'bna', 'CAN.G1104.8' => 'can', 'CAN.G447.9' => 'can', 'CANSAT01G0055' => 'cansat', 'CANSAT25G2801' => 'cansat', 'CANSAT64G0829' => 'cansat', 'CARHR010980' => 'chi', 'CARHR231830' => 'chi', 'CARHR231840' => 'chi', 'Carub.0001s1031' => 'cru', 'Carub.0007s1662' => 'cru', 'Carub.0007s1663' => 'cru', 'Ca_08744_v3' => 'car', 'Ca_22500_v3' => 'car', 'CBR_g12420' => 'cbr', 'CBR_g39013' => 'cbr', 'Cc10_g08370' => 'ccan', 'Cc11_g15490' => 'ccan', 'CDE04G1797' => 'cde', 'CDE04G2323' => 'cde', 'CDE04G3375' => 'cde', 'CDE04G3560' => 'cde', 'CDE06G0295' => 'cde', 'Cfa009191' => 'cfa', 'Ciclev10002917m.g' => 'ccl', 'Ciclev10017434m.g' => 'ccl', 'Ciclev10030499m.g' => 'ccl', 'CiPaw.05G184800' => 'cil', 'CiPaw.07G162800' => 'cil', 'CiPaw.07G162900' => 'cil', 'CiPaw.07G163000' => 'cil', 'CiPaw.08G057200' => 'cil', 'ClCG05G025580' => 'cla', 'ClCG11G014700' => 'cla', 'COL.COLO4_24234' => 'col', 'COL.COLO4_35285' => 'col', 'COL.COLO4_35286' => 'col', 'Cpa.g.sc21.43' => 'cpa', 'Cpa.g.sc69.90' => 'cpa', 'Cre07.g319300' => 'cre', 'Cre07.g319340' => 'cre', 'Cre07.g332300' => 'cre', 'Cre07.g333252' => 'cre', 'Cre08.g363874' => 'cre', 'Cre10.g424150' => 'cre', 'CsaV3_2G033350' => 'csa', 'CsaV3_2G033370' => 'csa', 'CsaV3_5G031320' => 'csa', 'CSS0001204' => 'camsi', 'CSS0005618' => 'camsi', 'CSS0021224' => 'camsi', 'CSS0026904' => 'camsi', 'CSS0027855' => 'camsi', 'CSS0031876' => 'camsi', 'CSS0046721' => 'camsi', 'CSS0046983' => 'camsi', 'CSS0048442' => 'camsi', 'DCAR_006444' => 'dca', 'DCAR_007066' => 'dca', 'DCAR_007067' => 'dca', 'DCAR_029738' => 'dca', 'DCAR_031129' => 'dca', 'Dinv15253' => 'din', 'Dinv24813' => 'din', 'Dinv42590' => 'din', 'Dinv42591' => 'din', 'Duzib041G0019' => 'dzi', 'Duzib041G0627' => 'dzi', 'Duzib116G0949' => 'dzi', 'Duzib268G0758' => 'dzi', 'ECA233G2601' => 'eca', 'ECA234G4650' => 'eca', 'ECA240G3991' => 'eca', 'ECA246G1742' => 'eca', 'EL10Ac6g13726' => 'bvu', 'EL10Ac8g20405' => 'bvu', 'EL10Ac9g20840' => 'bvu', 'Eucgr.F00436' => 'egr', 'Eucgr.H02531' => 'egr', 'FAN04G2369' => 'fan', 'FAN04G2482' => 'fan', 'FAN07G2766' => 'fan', 'FAN12G2701' => 'fan', 'FAN12G3618' => 'fan', 'FAN17G2901' => 'fan', 'FAN18G2982' => 'fan', 'FAN22G0388' => 'fan', 'FvH4_4g25800' => 'fve', 'FvH4_5g34180' => 'fve', 'FvH4_5g34191' => 'fve', 'FvH4_5g34192' => 'fve', 'FvH4_5g34193' => 'fve', 'Glyma.02G216100' => 'gma', 'Glyma.04G096500' => 'gma', 'Glyma.06G098200' => 'gma', 'Glyma.08G283700' => 'gma', 'Glyma.14G183100' => 'gma', 'Glyma.18G142500' => 'gma', 'Gohir.A01G159900' => 'ghi', 'Gohir.A01G159950' => 'ghi', 'Gohir.A05G216400' => 'ghi', 'Gohir.A05G216500' => 'ghi', 'Gohir.A05G264200' => 'ghi', 'Gohir.A12G144350' => 'ghi', 'Gohir.A12G144400' => 'ghi', 'Gohir.D01G150200' => 'ghi', 'Gohir.D05G220900' => 'ghi', 'Gohir.D05G221000' => 'ghi', 'Gohir.D05G266700' => 'ghi', 'Gohir.D12G148950' => 'ghi', 'Gohir.D12G149000' => 'ghi', 'Gorai.002G186200' => 'gra', 'Gorai.008G160400' => 'gra', 'Gorai.009G228000' => 'gra', 'Gorai.009G228100' => 'gra', 'Gorai.009G278800' => 'gra', 'GSVIVG01009213001' => 'vvi', 'GSVIVG01013806001' => 'vvi', 'HanXRQChr03g0063191' => 'han', 'HanXRQChr03g0093361' => 'han', 'HanXRQChr05g0143271' => 'han', 'HanXRQChr09g0264681' => 'han', 'HanXRQChr10g0277741' => 'han', 'HanXRQChr10g0277751' => 'han', 'HanXRQChr11g0353851' => 'han', 'HanXRQChr12g0371851' => 'han', 'HanXRQChr12g0384161' => 'han', 'HanXRQChr17g0547611' => 'han', 'HanXRQChr17g0547621' => 'han', 'Haze_12225' => 'cav', 'Haze_22489' => 'cav', 'Haze_27711' => 'cav', 'Hma1.2p1_0044F.1_g026380' => 'hma', 'Hma1.2p1_0125F.1_g058680' => 'hma', 'Hma1.2p1_0125F.1_g058690' => 'hma', 'Hma1.2p1_0223F.1_g094185' => 'hma', 'Hma1.2p1_0344F.1_g131080' => 'hma', 'Hma1.2p1_1861F.1_g305660' => 'hma', 'HPP92_003084' => 'vpl', 'HPP92_010288' => 'vpl', 'Hund01464' => 'sun', 'Hund06013' => 'sun', 'Hund07854' => 'sun', 'Hund18026' => 'sun', 'Hund25378' => 'sun', 'Hund25379' => 'sun', 'Lalb_Chr08g0242611' => 'lal', 'Lalb_Chr09g0334851' => 'lal', 'Lalb_Chr09g0334861' => 'lal', 'Lalb_Chr09g0334871' => 'lal', 'Lalb_Chr09g0334881' => 'lal', 'Lalb_Chr11g0064851' => 'lal', 'Lalb_Chr16g0392241' => 'lal', 'Lalb_Chr23g0269931' => 'lal', 'Lalb_Chr23g0269941' => 'lal', 'Lj4A85G30' => 'lonja', 'Lj4A85G31' => 'lonja', 'Lj4A85G32' => 'lonja', 'Lj4g0012667' => 'lja', 'Lj6A809T49' => 'lonja', 'Lj6C809G13' => 'lonja', 'LjContig00408g0006754' => 'lja', 'Lsat_1_v5_gn_4_160220' => 'lsa', 'Lsat_1_v5_gn_4_4920' => 'lsa', 'Lsat_1_v5_gn_4_60280' => 'lsa', 'Lsat_1_v5_gn_6_107360' => 'lsa', 'Lsat_1_v5_gn_7_43741' => 'lsa', 'Lsat_1_v5_gn_8_153980' => 'lsa', 'Manes.05G189000' => 'mes', 'Manes.13G026800' => 'mes', 'Manes.18G057000' => 'mes', 'Mapoly0012s0108' => 'mpo', 'Mapoly0038s0029' => 'mpo', 'Mapoly0046s0022' => 'mpo', 'Mapoly0046s0023' => 'mpo', 'Mapoly0067s0078' => 'mpo', 'MBI02_g34989_MAGBIO' => 'mbi', 'MBI05_g39009_MAGBIO' => 'mbi', 'MBI15_g14939_MAGBIO' => 'mbi', 'MBI16_g14597_MAGBIO' => 'mbi', 'MBI16_g27903_MAGBIO' => 'mbi', 'MBI17_g30593_MAGBIO' => 'mbi', 'MBI17_g38829_MAGBIO' => 'mbi', 'MBI19_g32700_MAGBIO' => 'mbi', 'MBI19_g33777_MAGBIO' => 'mbi', 'MCO02G023' => 'mco', 'MCO02G032' => 'mco', 'MCO06G074' => 'mco', 'MCO07G158' => 'mco', 'MCO16G440' => 'mco', 'MD08G1203800' => 'mdo', 'MD08G1203900' => 'mdo', 'MD13G1096800' => 'mdo', 'MD16G1097800' => 'mdo', 'Medtr5g066740' => 'mtr', 'Medtr7g005540' => 'mtr', 'Medtr8g069760' => 'mtr', 'MELO3C008106.2' => 'cme', 'MELO3C011972.2' => 'cme', 'Migut.B00439' => 'egut', 'Migut.L01476' => 'egut', 'Migut.N01147' => 'egut', 'MSTRG.16686' => 'ama', 'MSTRG.27758' => 'ama', 'MSTRG.5323' => 'ama', 'MSTRG.577' => 'ama', 'MSTRG.7915' => 'ama', 'Nitab4.5_0000354g0080' => 'nta', 'Nitab4.5_0000885g0060' => 'nta', 'Nitab4.5_0002255g0040' => 'nta', 'Nitab4.5_0007943g0010' => 'nta', 'Nn1g05642' => 'nnu', 'Nn4g22680' => 'nnu', 'Nn5g29817' => 'nnu', 'Oeu038169.3' => 'oeu', 'Oeu038612.1' => 'oeu', 'Oeu040884.1' => 'oeu', 'Os01g0970500' => 'osa', 'Os05g0107700' => 'osa', 'Os06g0474866' => 'osa', 'Os06g0498400' => 'osa', 'Peaxi162Scf00160g00913' => 'pax', 'Peaxi162Scf00515g00133' => 'pax', 'PGR042G3224' => 'pgr', 'PGR119G2090' => 'pgr', 'PGSC0003DMG400002052' => 'stu', 'PGSC0003DMG400007677' => 'stu', 'Phvul.003G062900' => 'pvu', 'Phvul.008G183300' => 'pvu', 'Potri.005G151700' => 'ptr', 'Potri.008G188150' => 'ptr', 'Potri.010G044100' => 'ptr', 'Pp3c15_13540' => 'ppa', 'Pp3c3_11200' => 'ppa', 'Pp3c8_6520' => 'ppa', 'Pp3c8_6536' => 'ppa', 'Pp3c9_10830' => 'ppa', 'PRCOL_00000768' => 'pco', 'PRCOL_00001724' => 'pco', 'PRCOL_00006458' => 'pco', 'Prupe.1G248900' => 'ppe', 'Prupe.1G536100' => 'ppe', 'Prupe.1G536300' => 'ppe', 'Psat0s2399g0160' => 'psa', 'Psat2g064960' => 'psa', 'Psat4g114160' => 'psa', 'Psat4g114200' => 'psa', 'Psat4g114240' => 'psa', 'PSO013G0324' => 'pso', 'PSO063G5092' => 'pso', 'PSO675G6980' => 'pso', 'PSO700G0345' => 'pso', 'PSO761G0276' => 'pso', 'PSO832G0819' => 'pso', 'PSO832G3977' => 'pso', 'QL03p058693' => 'qlo', 'QL09p018643' => 'qlo', 'QL09p018667' => 'qlo', 'RcHm_v2.0_Chr2g0129611' => 'rch', 'RcHm_v2.0_Chr4g0433251' => 'rch', 'RcHm_v2.0_Chr5g0012851' => 'rch', 'RcHm_v2.0_Chr6g0270131' => 'rch', 'RcHm_v2.0_Chr7g0233431' => 'rch', 'RcHm_v2.0_Chr7g0233761' => 'rch', 'RcHm_v2.0_Chr7g0233791' => 'rch', 'RcHm_v2.0_Chr7g0233821' => 'rch', 'RcHm_v2.0_Chr7g0233921' => 'rch', 'RcHm_v2.0_Chr7g0233931' => 'rch', 'RcHm_v2.0_Chr7g0234231' => 'rch', 'RcHm_v2.0_Chr7g0234461' => 'rch', 'RcHm_v2.0_Chr7g0234611' => 'rch', 'RcHm_v2.0_Chr7g0234621' => 'rch', 'Rhsim02G0071900' => 'rsi', 'Rhsim07G0213400' => 'rsi', 'Rhsim07G0213700' => 'rsi', 'Rhsim12G0042000' => 'rsi', 'Rhsim12G0113000' => 'rsi', 'Sabra02G0086900' => 'sbr', 'Sabra05G0119200' => 'sbr', 'Sabra08G0142500' => 'sbr', 'Sabra10G0023900' => 'sbr', 'SalBow2G1604' => 'sbo', 'SalBow3G1925' => 'sbo', 'SalBow6G3832' => 'sbo', 'SalBow6G5818' => 'sbo', 'Sc04g0009380' => 'sci', 'Sed0006405' => 'sed', 'Sed0015347' => 'sed', 'Sed0016266' => 'sed', 'Sed0024840' => 'sed', 'SEGI_00062' => 'sgi', 'SEGI_00676' => 'sgi', 'SEGI_12281' => 'sgi', 'SEGI_25233' => 'sgi', 'SEGI_32317' => 'sgi', 'SEGI_32533' => 'sgi', 'SEGI_33023' => 'sgi', 'SEGI_38232' => 'sgi', 'SEGI_38712' => 'sgi', 'SGA_v2.0_scaffold219G42523' => 'sas', 'SGA_v2.0_scaffold228G43260' => 'sas', 'SGA_v2.0_scaffold337G49194' => 'sas', 'SHI29728' => 'shi', 'SMO069G0004' => 'smo', 'SMO133G0036' => 'smo', 'SMO169G0007' => 'smo', 'SMO347G0598' => 'smo', 'Solyc05g005020.4' => 'sly', 'Solyc12g088030.2' => 'sly', 'Sopen05g001030' => 'spe', 'Sopen12g030060' => 'spe', 'Sp1g09460' => 'spa', 'Sp7g22400' => 'spa', 'Sp7g22430' => 'spa', 'TAR374G1700' => 'tar', 'TAR381G0322' => 'tar', 'TAR622G0036' => 'tar', 'TAR625G0060' => 'tar', 'TAR628G1058' => 'tar', 'THA.LOC104799853' => 'tha', 'THA.LOC104799855' => 'tha', 'THA.LOC104815469' => 'tha', 'THA.LOC104823655' => 'tha', 'Thecc.02G256300' => 'tca', 'Thecc.08G073900' => 'tca', 'Thecc.08G074000' => 'tca', 'Thhalv10006565m.g' => 'esa', 'Thhalv10024230m.g' => 'esa', 'Thhalv10026637m.g' => 'esa', 'TPR.G15622' => 'tpr', 'TPR.G23137' => 'tpr', 'TPR.G38776' => 'tpr', 'TWI09G0135' => 'twi', 'TWI18G0188' => 'twi', 'TWI56G0439' => 'twi', 'TWI73G1055' => 'twi', 'TWI75G1447' => 'twi', 'unitig_22.g6842' => 'ugi', 'unitig_26.g10358' => 'ugi', 'unitig_8.g3420' => 'ugi', 'vmacro01143' => 'vma', 'vmacro04624' => 'vma', 'vmacro04625' => 'vma', 'vmacro04633' => 'vma', 'vmacro04634' => 'vma', 'vmacro04635' => 'vma', 'vmacro16213' => 'vma', 'VMungo0251G0184' => 'vmu', 'VMungo0647G1399' => 'vmu', 'Zm00001eb072320' => 'zma', 'Zm00001eb139900' => 'zma', 'Zm00001eb278140' => 'zma', 'Zm00001eb356100' => 'zma', 'Zm00001eb398390' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001366' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001366' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001366' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001366' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151