Gene: AT4G24440
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G24440
- Transcript Identifier AT4G24440.2
- Gene Type Coding gene
- Location Chr4 : 12633460-12634553 : positive
Gene Family Information
- ID HOM05D001366
- #Genes/#Species 457/100
- Phylogenetic origin
- ID ORTHO05D005449
- #Genes/#Species 157/93
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT4G24440.2
- uniprot Q39236
Descriptions
- Description transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
- Computational description transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIA, gamma subunit (InterPro:IPR003194), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription initiation factor IIA, gamma subunit, N-terminal (InterPro:IPR015872), Transcription initiation factor IIA, gamma subunit, C-terminal (InterPro:IPR015871), Transcription factor IIA, helical (InterPro:IPR009083); Has 550 Blast hits to 550 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 161; Plants - 188; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
- Computational description transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIA, gamma subunit (InterPro:IPR003194), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription initiation factor IIA, gamma subunit, N-terminal (InterPro:IPR015872), Transcription initiation factor IIA, gamma subunit, C-terminal (InterPro:IPR015871), Transcription factor IIA, helical (InterPro:IPR009083); Has 553 Blast hits to 553 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 162; Plants - 188; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
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Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051123 | IBA | Gene Ontology | RNA polymerase II preinitiation complex assembly | 1 |
| GO:0006367 | IEA | GOA Database | transcription initiation from RNA polymerase II promoter | |
| GO:0006367 | IEA | InterPro | transcription initiation from RNA polymerase II promoter |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0017025 | IBA | Gene Ontology | TBP-class protein binding | 1 |
| GO:0016251 | IBA | Gene Ontology | RNA polymerase II general transcription initiation factor activity | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005672 | IEA | GOA Database | transcription factor TFIIA complex | |
| GO:0005672 | IBA | Gene Ontology | transcription factor TFIIA complex | 1 |
| GO:0005672 | IEA | InterPro | transcription factor TFIIA complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015871 | Transcription initiation factor IIA, gamma subunit, C-terminal |
| IPR015872 | Transcription initiation factor IIA, gamma subunit, N-terminal |
| IPR003194 | Transcription initiation factor IIA, gamma subunit |
| IPR009083 | Transcription factor IIA, alpha-helical domain |
| IPR009088 | Transcription factor IIA, beta-barrel |
| Mapman id | Description |
|---|---|
| 15.3.3.1.2 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIa basal transcription factor heterodimer.small subunit |