Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XJG2SM Arachis hypogaea HOM05D001674 ORTHO05D005257 6.9e-165 583.9 306 100.0
arahy.Tifrunner.gnm1.ann1.GZJK2B Arachis hypogaea HOM05D001674 ORTHO05D005257 6.0e-68 261.9 669 33.9
arahy.Tifrunner.gnm1.ann1.R8ERLJ Arachis hypogaea HOM05D001674 ORTHO05D005257 6.9e-64 248.4 671 33.1
arahy.Tifrunner.gnm1.ann1.C6KQRR Arachis hypogaea HOM05D001674 ORTHO05D005257 9.3e-61 238.0 137 95.6
arahy.Tifrunner.gnm1.ann1.J3RYPU Arachis hypogaea HOM05D001674 ORTHO05D005257 1.3e-59 234.2 170 74.1
arahy.Tifrunner.gnm1.ann1.5ZM33J Arachis hypogaea HOM05D001674 ORTHO05D005257 1.0e-54 218.0 269 53.2
arahy.Tifrunner.gnm1.ann1.WH471K Arachis hypogaea HOM05D001674 ORTHO05D005257 2.1e-52 210.3 190 64.7
arahy.Tifrunner.gnm1.ann1.M5C3PT Arachis hypogaea HOM05D001674 ORTHO05D005257 2.3e-51 206.8 153 74.5
arahy.Tifrunner.gnm1.ann1.QBL01D Arachis hypogaea HOM05D024092 ORTHO05D005257 2.3e-51 206.8 153 74.5
arahy.Tifrunner.gnm1.ann1.0H98Z4 Arachis hypogaea HOM05D001674 ORTHO05D005257 3.7e-49 199.5 173 64.2
arahy.Tifrunner.gnm1.ann1.L93FEN Arachis hypogaea HOM05D001674 ORTHO05D005257 9.1e-48 194.9 312 45.2
arahy.Tifrunner.gnm1.ann1.L3732C Arachis hypogaea HOM05D001674 ORTHO05D005257 4.1e-40 169.5 259 48.3
arahy.Tifrunner.gnm1.ann1.RDG2VZ Arachis hypogaea HOM05D001674 ORTHO05D005257 9.4e-37 158.3 218 48.2
arahy.Tifrunner.gnm1.ann1.AE44IX Arachis hypogaea HOM05D001674 ORTHO05D005257 1.2e-31 141.4 252 41.3
arahy.Tifrunner.gnm1.ann1.46C2EF Arachis hypogaea HOM05D001674 ORTHO05D005257 2.9e-30 136.7 267 40.4
Dinv24721 Davidia involucrata HOM05D001674 ORTHO05D005257 2.9e-30 136.7 272 38.6
arahy.Tifrunner.gnm1.ann1.H72Z00 Arachis hypogaea HOM05D003946 ORTHO05D005257 3.8e-30 136.3 248 39.5
Lj4g0019577 Lotus japonicus HOM05D001674 ORTHO05D005257 5.0e-30 136.0 270 38.1
Glyma.17G041700 Glycine max HOM05D001674 ORTHO05D005257 6.5e-30 135.6 270 38.1
Ca_21367_v3 Cicer arietinum L. HOM05D001674 ORTHO05D005257 8.5e-30 135.2 270 38.1
Glyma.13G118200 Glycine max HOM05D001674 ORTHO05D005257 1.9e-29 134.0 167 49.1
GSVIVG01017700001 Vitis vinifera HOM05D001674 ORTHO05D005257 1.9e-29 134.0 272 38.2
CANSAT78G0587 Cannabis sativa HOM05D001674 ORTHO05D005257 7.2e-29 132.1 274 36.9
TPR.G12547 Trifolium pratense HOM05D001674 ORTHO05D005257 7.2e-29 132.1 273 38.1
CSS0042912 Camellia sinensis var. sinensis HOM05D001674 ORTHO05D005257 1.2e-28 131.3 272 37.5
Lalb_Chr13g0299021 Lupinus albus HOM05D001674 ORTHO05D005257 1.2e-28 131.3 270 37.4
CiPaw.01G127900 Carya illinoinensis HOM05D001674 ORTHO05D005257 1.6e-28 131.0 270 37.0
MSTRG.22009 Avicennia marina HOM05D001674 ORTHO05D005257 2.1e-28 130.6 272 37.5
Medtr4g124090 Medicago truncatula HOM05D001674 ORTHO05D005257 2.7e-28 130.2 272 37.5
Cc03_g00030 Coffea canephora HOM05D001674 ORTHO05D005257 3.6e-28 129.8 273 37.0
Cfa015741 Carpinus fangiana HOM05D001674 ORTHO05D005257 4.7e-28 129.4 272 37.5
arahy.Tifrunner.gnm1.ann1.IJDX12 Arachis hypogaea HOM05D001674 ORTHO05D005257 1.4e-27 127.9 208 43.8
HanXRQChr05g0148951 Helianthus annuus HOM05D001674 ORTHO05D005257 1.4e-27 127.9 272 36.0
Prupe.1G103200 Prunus persica HOM05D001674 ORTHO05D005257 1.4e-27 127.9 273 37.7
Rhsim04G0249200 Rhododendron simsii HOM05D001674 ORTHO05D005257 1.4e-27 127.9 267 37.1
Ciclev10004488m.g Citrus clementina HOM05D001674 ORTHO05D005257 1.8e-27 127.5 270 36.3
Lj3C842G5 Lonicera japonica HOM05D001674 ORTHO05D005257 1.8e-27 127.5 272 36.8
Phvul.003G123100 Phaseolus vulgaris HOM05D001674 ORTHO05D005257 2.3e-27 127.1 270 36.7
Potri.010G003300 Populus trichocarpa HOM05D001674 ORTHO05D005257 2.3e-27 127.1 272 37.9
RcHm_v2.0_Chr4g0427901 Rosa chinensis HOM05D001674 ORTHO05D005257 5.2e-27 125.9 267 37.8
VMungo1215G3338 Vigna mungo HOM05D001674 ORTHO05D005257 6.8e-27 125.6 270 35.9
Atru.chr4.3178 Acer truncatum HOM05D001674 ORTHO05D005257 8.8e-27 125.2 275 36.0
Migut.N03098 Erythranthe guttata HOM05D001674 ORTHO05D005257 8.8e-27 125.2 268 37.3
MD13G1156900 Malus domestica HOM05D001674 ORTHO05D005257 8.8e-27 125.2 267 37.1
Aqoxy2G02487 Aquilegia oxysepala HOM05D001674 ORTHO05D005257 1.2e-26 124.8 267 37.1
Manes.03G212800 Manihot esculenta HOM05D001674 ORTHO05D005257 2.0e-26 124.0 270 35.9
SGA_v2.0_scaffold322G48597 Striga asiatica HOM05D001674 ORTHO05D005257 2.0e-26 124.0 213 40.8
QL06p014511 Quercus lobata HOM05D001674 ORTHO05D005257 5.7e-26 122.5 267 36.7
Gohir.D06G117500 Gossypium hirsutum HOM05D001674 ORTHO05D005257 1.3e-25 121.3 272 36.4
ECA246G1105 Erigeron canadensis HOM05D001674 ORTHO05D005257 1.7e-25 120.9 270 34.4
Gorai.010G135100 Gossypium raimondii HOM05D001674 ORTHO05D005257 2.2e-25 120.6 272 36.0
Duzib235G1161 Durio zibethinus HOM05D001674 ORTHO05D005257 2.8e-25 120.2 274 37.2
FAN17G2195 Fragaria x ananassa HOM05D001674 ORTHO05D005257 2.8e-25 120.2 272 36.4
Peaxi162Scf00323g00935 Petunia axillaris HOM05D001674 ORTHO05D005257 2.8e-25 120.2 272 35.7
EL10Ac3g06234 Beta vulgaris HOM05D001674 ORTHO05D005257 3.7e-25 119.8 268 35.1
Eucgr.H04132 Eucalyptus grandis HOM05D001674 ORTHO05D005257 3.7e-25 119.8 265 36.2
MBI19_g30290_MAGBIO Magnolia biondii HOM05D001674 ORTHO05D005257 3.7e-25 119.8 267 36.3
Thecc.05G189900 Theobroma cacao HOM05D001674 ORTHO05D005257 3.7e-25 119.8 272 36.0
Gohir.A06G112800 Gossypium hirsutum HOM05D001674 ORTHO05D005257 4.8e-25 119.4 272 35.7
PSO170G0915 Papaver somniferum HOM05D001674 ORTHO05D005257 4.8e-25 119.4 275 34.9
CDE11G0774 Ceratophyllum demersum HOM05D001674 ORTHO05D005257 6.3e-25 119.0 251 37.5
CAN.G484.96 Capsicum annuum HOM05D001674 ORTHO05D005257 8.3e-25 118.6 267 36.3
PGR004G0096 Punica granatum HOM05D001674 ORTHO05D005257 8.3e-25 118.6 271 35.8
MD16G1134000 Malus domestica HOM05D001674 ORTHO05D005257 1.1e-24 118.2 275 35.6
Nitab4.5_0000978g0050 Nicotiana tabacum HOM05D001674 ORTHO05D005257 1.1e-24 118.2 288 34.0
Sed0007966 Sechium edule HOM05D001674 ORTHO05D005257 1.1e-24 118.2 270 36.3
Sopen12g033610 Solanum pennellii HOM05D001674 ORTHO05D005257 1.4e-24 117.9 272 35.7
Solyc12g098860.2 Solanum lycopersicum HOM05D001674 ORTHO05D005257 1.8e-24 117.5 272 35.7
Os07g0636200 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D005257 2.4e-24 117.1 272 36.0
CsaV3_3G015550 Cucumis sativus L. HOM05D001674 ORTHO05D005257 3.1e-24 116.7 270 36.7
Nitab4.5_0012375g0010 Nicotiana tabacum HOM05D001674 ORTHO05D005257 5.4e-24 115.9 294 33.3
PSO445G0012 Papaver somniferum HOM05D001674 ORTHO05D005257 5.4e-24 115.9 275 34.5
arahy.Tifrunner.gnm1.ann1.V6XLN1 Arachis hypogaea HOM05D001674 ORTHO05D005257 9.1e-24 115.2 75 81.3
arahy.Tifrunner.gnm1.ann1.9P5NNS Arachis hypogaea HOM05D000104 ORTHO05D005257 1.6e-23 114.4 189 43.4
THA.LOC104802617 Tarenaya hassleriana HOM05D001674 ORTHO05D005257 2.7e-23 113.6 275 34.5
ClCG05G006880 Citrullus lanatus HOM05D001674 ORTHO05D005257 3.5e-23 113.2 270 35.6
AL1G54910 Arabidopsis lyrata HOM05D001674 ORTHO05D005257 4.5e-23 112.8 267 34.1
Thhalv10011287m.g Eutrema salsugineum HOM05D001674 ORTHO05D005257 4.5e-23 112.8 267 34.1
Psat0s1206g0200 Pisum sativum HOM05D001674 ORTHO05D005257 5.9e-23 112.5 166 44.0
Sc25g0001840 Simmondsia chinensis HOM05D001674 ORTHO05D005257 7.7e-23 112.1 274 35.0
arahy.Tifrunner.gnm1.ann1.LSIV7S Arachis hypogaea HOM05D001674 ORTHO05D005257 1.3e-22 111.3 75 78.7
FvH4_4g21690 Fragaria vesca HOM05D001674 ORTHO05D005257 1.7e-22 110.9 217 39.2
Actinidia18515 Actinidia chinensis HOM05D001674 ORTHO05D005257 2.9e-22 110.2 217 37.3
BcaC05g27587 Brassica carinata HOM05D001674 ORTHO05D005257 2.9e-22 110.2 267 33.3
A05p21130 Brassica napus HOM05D001674 ORTHO05D005257 2.9e-22 110.2 267 33.3
C05p35670 Brassica napus HOM05D001674 ORTHO05D005257 2.9e-22 110.2 267 33.3
arahy.Tifrunner.gnm1.ann1.P6110R Arachis hypogaea HOM05D001674 ORTHO05D005257 5.0e-22 109.4 103 62.1
ATR0796G053 Amborella trichopoda HOM05D001674 ORTHO05D005257 8.5e-22 108.6 217 37.8
BcaB02g11412 Brassica carinata HOM05D001674 ORTHO05D005257 1.1e-21 108.2 279 32.6
AT1G48310 Arabidopsis thaliana HOM05D001674 ORTHO05D005257 1.9e-21 107.5 265 32.5
Oeu002203.3 Olea europaea HOM05D001674 ORTHO05D005257 1.9e-21 107.5 165 43.6
arahy.Tifrunner.gnm1.ann1.QKVB7G Arachis hypogaea HOM05D001674 ORTHO05D005257 4.2e-21 106.3 184 41.8
TAR362G1045 Trochodendron aralioides HOM05D001674 ORTHO05D005257 5.5e-21 105.9 301 32.9
Cpa.g.sc146.11 Carica papaya HOM05D001674 ORTHO05D005257 7.2e-21 105.5 234 35.0
TWI77G0300 Tripterygium wilfordii HOM05D001674 ORTHO05D005257 7.2e-21 105.5 248 36.7
BolC5t32283H Brassica oleracea HOM05D001674 ORTHO05D005257 1.2e-20 104.8 217 35.9
BraA05t21018Z Brassica rapa HOM05D001674 ORTHO05D005257 1.2e-20 104.8 217 35.9
Sp1g35260 Schrenkiella parvula HOM05D001674 ORTHO05D005257 1.6e-20 104.4 265 32.5
Zm00001eb328680 Zea mays HOM05D001674 ORTHO05D005257 1.6e-20 104.4 217 36.4
Aa31LG10G5460 Aethionema arabicum HOM05D001674 ORTHO05D005257 2.1e-20 104.0 278 31.3
arahy.Tifrunner.gnm1.ann1.3PX28T Arachis hypogaea HOM05D001674 ORTHO05D005257 4.7e-20 102.8 155 46.5
Carub.0001s3744 Capsella rubella HOM05D001674 ORTHO05D005257 4.7e-20 102.8 267 31.1
Lsat_1_v5_gn_6_118341 Lactuca sativa HOM05D001674 ORTHO05D005257 6.1e-20 102.4 212 35.8
PGSC0003DMG400004680 Solanum tuberosum HOM05D000104 ORTHO05D005257 8.0e-20 102.1 160 43.1
unitig_8.g3632 Utricularia gibba HOM05D001674 ORTHO05D005257 8.0e-20 102.1 244 34.0
AUR62023654 Chenopodium quinoa HOM05D001674 ORTHO05D005257 1.0e-19 101.7 215 38.6
COL.COLO4_28308 Corchorus olitorius HOM05D001674 ORTHO05D005257 4.0e-19 99.8 205 37.6
CARHR037930 Cardamine hirsuta HOM05D001674 ORTHO05D005257 6.8e-19 99.0 277 30.3
Atru.chr4.3179 Acer truncatum HOM05D001674 ORTHO05D005257 8.8e-19 98.6 167 38.9
arahy.Tifrunner.gnm1.ann1.L3GI5E Arachis hypogaea HOM05D001674 ORTHO05D005257 8.8e-19 98.6 155 43.9
HPP92_020542 Vanilla planifolia HOM05D000104 ORTHO05D005257 1.5e-18 97.8 168 39.9
DCAR_026931 Daucus carota HOM05D000104 ORTHO05D005257 2.0e-18 97.4 157 41.4
FAN12G1186 Fragaria x ananassa HOM05D001674 ORTHO05D005257 2.0e-18 97.4 247 34.8
Haze_00775 Corylus avellana HOM05D001674 ORTHO05D005257 5.7e-18 95.9 150 42.7
Ah.07g203550 Amaranthus hybridus HOM05D001674 ORTHO05D005257 7.5e-18 95.5 218 34.9
AUR62002539 Chenopodium quinoa HOM05D001674 ORTHO05D005257 4.9e-17 92.8 244 34.4
MELO3C006754.2 Cucumis melo HOM05D001674 ORTHO05D005257 1.8e-16 90.9 239 35.1
vmacro08016 Vaccinium macrocarpon HOM05D001674 ORTHO05D005257 5.4e-16 89.4 98 52.0
Pp3c16_16990 Physcomitrium patens HOM05D001674 ORTHO05D005257 1.2e-15 88.2 224 30.8
MD13G1138200 Malus domestica HOM05D000021 ORTHO05D005257 1.6e-15 87.8 174 36.2
arahy.Tifrunner.gnm1.ann1.H7NCZ2 Arachis hypogaea HOM05D035602 ORTHO05D083452 5.9e-15 85.9 43 97.7
Mapoly0113s0030 Marchantia polymorpha HOM05D000104 ORTHO05D005257 1.1e-13 81.6 103 46.6
SMO364G0824 Selaginella moellendorffii HOM05D001674 ORTHO05D005257 1.5e-13 81.3 214 32.7
Hund22642 Selenicereus undatus HOM05D001674 ORTHO05D005257 1.5e-13 81.3 166 36.1
arahy.Tifrunner.gnm1.ann1.C00RGM Arachis hypogaea HOM05D001674 ORTHO05D082434 1.9e-13 80.9 162 40.7
Sabra10G0002600 Salix brachista HOM05D001674 ORTHO05D005257 4.2e-13 79.7 164 34.1
Haze_00755 Corylus avellana HOM05D001674 ORTHO05D005257 9.5e-13 78.6 151 39.7
CBR_g29672 Chara braunii HOM05D001674 ORTHO05D005257 1.2e-12 78.2 216 30.6
SalBow6G2708 Salvia bowleyana HOM05D001674 ORTHO05D005257 3.6e-12 76.6 212 31.6
MCO12G185 Micromonas commoda HOM05D000104 ORTHO05D005257 5.2e-11 72.8 107 42.1
DCAR_026930 Daucus carota HOM05D000104 ORTHO05D005257 6.8e-11 72.4 97 47.4
DCAR_026936 Daucus carota HOM05D000104 ORTHO05D005257 6.8e-11 72.4 97 47.4
MD00G1002500 Malus domestica HOM05D000104 ORTHO05D005257 1.2e-10 71.6 47 78.7
Hma1.2p1_1067F.1_g253855 Hydrangea macrophylla HOM05D001674 ORTHO05D005257 1.5e-10 71.2 177 33.3
Hma1.2p1_1449F.1_g284110 Hydrangea macrophylla HOM05D001674 ORTHO05D005257 1.5e-10 71.2 177 33.3
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 5.7e-10 69.3 50 74.0
Psat2g071560 Pisum sativum HOM05D001674 ORTHO05D005257 7.5e-10 68.9 46 78.3
DCAR_026933 Daucus carota HOM05D001674 ORTHO05D005257 2.4e-08 63.9 41 78.0
arahy.Tifrunner.gnm1.ann1.VY9WGI Arachis hypogaea HOM05D001674 ORTHO05D005257 4.1e-08 63.2 38 84.2
arahy.Tifrunner.gnm1.ann1.DYPB85 Arachis hypogaea HOM05D001674 ORTHO05D005257 1.2e-07 61.6 40 77.5
Oeu002205.2 Olea europaea HOM05D001674 ORTHO05D005257 1.2e-07 61.6 203 29.6
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 2.0e-07 60.8 41 80.5
Haze_00754 Corylus avellana HOM05D001674 ORTHO05D005257 3.5e-07 60.1 170 31.2
Cre03.g199350 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D005257 4.6e-07 59.7 105 34.3


User provided reference genes

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