Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1397.5 711 100.0
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1285.4 711 93.5
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1283.1 711 93.2
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1278.8 711 93.1
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1179.9 709 85.8
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1165.2 711 84.7
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1162.9 709 84.9
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1157.9 710 83.7
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1145.2 701 84.0
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1142.1 706 82.9
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1141.3 709 82.7
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1133.2 682 85.5
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1128.2 706 81.3
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1126.7 707 81.5
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1120.9 709 81.5
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1120.5 709 81.1
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1117.4 709 81.2
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1115.1 709 80.8
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1111.7 708 80.4
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1111.3 706 80.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1109.4 712 80.3
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1109.4 706 80.0
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1109.4 706 80.0
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1107.4 705 80.7
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1107.0 709 80.3
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1107.0 709 80.4
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1106.7 708 80.4
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1105.9 706 80.3
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1105.1 708 79.9
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1101.7 705 80.4
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1098.2 710 78.6
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1098.2 708 80.2
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1097.0 719 79.8
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1096.6 710 79.2
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1090.9 707 79.8
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1088.9 738 77.0
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1086.2 710 78.7
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1080.9 709 77.3
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1078.9 710 78.0
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1075.8 703 79.1
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1075.1 701 78.2
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 4.9e-312 1074.3 707 78.5
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 4.9e-312 1074.3 708 77.5
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 2.4e-311 1071.6 695 79.1
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 2.4e-311 1071.6 695 79.1
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 2.1e-310 1068.5 709 77.0
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 4.8e-310 1067.4 709 76.9
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 3.1e-309 1064.7 701 77.3
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 3.1e-309 1064.7 701 77.5
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 3.4e-308 1061.2 726 76.4
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 7.7e-308 1060.1 711 76.5
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 7.7e-308 1060.1 715 77.3
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 1.7e-307 1058.9 717 76.6
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 2.9e-307 1058.1 701 76.9
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 6.5e-307 1057.0 709 75.7
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 8.5e-307 1056.6 701 77.0
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 1.1e-306 1056.2 709 75.6
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 1.9e-306 1055.4 711 76.2
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 2.5e-306 1055.0 713 76.7
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 9.4e-306 1053.1 709 76.2
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 1.6e-305 1052.4 706 77.8
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.7e-305 1051.6 702 77.1
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 2.3e-304 1048.5 702 76.4
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 3.0e-304 1048.1 713 75.3
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 5.1e-304 1047.3 702 76.4
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 8.8e-304 1046.6 709 75.5
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 7.4e-303 1043.5 731 75.1
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 1.3e-302 1042.7 729 74.6
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 2.8e-302 1041.6 723 74.3
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 2.6e-300 1035.0 731 73.5
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 4.2e-298 1027.7 740 72.0
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 4.2e-298 1027.7 718 75.2
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 2.1e-297 1025.4 711 73.8
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 5.7e-295 1017.3 793 70.1
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 4.8e-294 1014.2 767 70.7
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 6.3e-294 1013.8 712 74.6
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 7.0e-293 1010.4 686 74.2
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 4.7e-289 997.7 681 74.3
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 8.0e-289 996.9 663 77.1
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 8.3e-286 986.9 637 80.2
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.4e-285 986.1 730 71.0
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.8e-280 969.1 710 72.7
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 1.7e-278 962.6 709 72.8
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.3e-275 953.0 710 70.8
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 5.2e-264 914.4 706 66.1
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 6.8e-264 914.1 622 74.8
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 4.4e-263 911.4 630 74.3
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 4.9e-262 907.9 685 66.6
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 3.2e-261 905.2 716 67.9
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 4.1e-261 904.8 681 68.4
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.8e-257 892.1 694 69.5
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 1.1e-253 880.2 706 64.4
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 1.9e-250 869.4 699 63.4
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 2.9e-246 855.5 549 78.3
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.4e-246 854.4 675 68.0
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.4e-237 826.6 739 61.7
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 9.6e-234 813.9 739 60.9
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 6.2e-225 784.6 483 81.6
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 1.7e-206 723.4 506 72.3
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 2.3e-195 686.4 704 52.4
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 6.3e-177 625.2 368 87.2
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 2.6e-175 619.8 572 58.2
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 5.9e-175 618.6 365 86.0
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 5.0e-174 615.5 703 49.1
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.5e-170 604.0 420 71.4
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 5.4e-168 595.5 361 83.9
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 5.9e-167 592.0 382 80.4
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 1.2e-164 584.3 713 46.7
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 2.5e-141 506.9 344 75.3
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 6.8e-139 498.8 367 71.4
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.6e-134 481.9 624 47.6
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.0e-130 470.7 348 69.5
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 3.4e-130 469.9 347 69.7
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.0e-110 405.2 336 65.2
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 4.0e-107 393.3 504 47.2
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.7e-81 308.1 218 74.3
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 8.5e-81 305.8 219 71.2
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 3.8e-65 253.8 179 72.6
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 4.8e-60 236.9 220 64.1
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 1.9e-56 224.9 234 57.7
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 4.2e-56 223.8 241 55.6
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 9.1e-51 206.1 104 89.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 4.0e-46 190.7 212 47.6
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 2.9e-36 157.9 401 31.9
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 7.0e-35 153.3 557 29.8
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 1.0e-33 149.4 87 83.9
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-33 149.1 145 55.2
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.3e-33 149.1 87 83.9
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 3.9e-33 147.5 107 70.1
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.1e-32 146.0 87 82.8
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 1.9e-32 145.2 104 77.9
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 3.0e-25 121.3 86 73.3
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.3e-24 117.9 114 55.3
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 2.1e-23 115.2 68 88.2
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 4.7e-23 114.0 68 86.8
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 8.1e-23 113.2 82 74.4
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 7.8e-18 96.7 54 85.2
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 2.3e-17 95.1 54 85.2
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-16 92.8 97 60.8
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.3e-16 91.3 82 64.6
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 1.6e-15 89.0 49 93.9
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 8.1e-15 86.7 89 59.6
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 1.4e-14 85.9 49 89.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 6.8e-14 83.6 251 30.7
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 7.6e-13 80.1 63 69.8
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.7e-12 79.0 68 52.9
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 4.9e-12 77.4 43 83.7
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.7e-10 71.6 67 56.7
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.8e-10 70.1 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.5e-08 65.9 105 43.8
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.6e-07 62.4 43 67.4
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 4.0e-06 57.8 40 65.0
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 6.9e-06 57.0 33 84.8
TPR.G29746 Trifolium pratense HOM05D004763 ORTHO05D412220 6.9e-06 57.0 37 70.3
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 9.0e-06 56.6 33 90.9


User provided reference genes

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