Gene: Cc01_g04070
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc01_g04070
- Transcript Identifier Cc01_g04070.1
- Gene Type Coding gene
- Location chr1 : 10832498-10840376 : positive
Gene Family Information
- ID HOM05D004763
- #Genes/#Species 154/95
- Phylogenetic origin
- ID ORTHO05D007492
- #Genes/#Species 130/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- UniProtKB Q9YE64
- UniProtKB G7IHQ9
- UniProtKB Q9C5V6
- UniProtKB I1M541
- UniProtKB D7SLA7
- UniProtKB C3NHT6
- id GSCOCG00039274001
Descriptions
- Description DNA topoisomerase 6 subunit B
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006265 | IEA | InterPro | DNA topological change | |
| GO:0000902 | ISO | PLAZA Integrative Orthology | cell morphogenesis | AT3G20780 |
| GO:0042023 | ISO | PLAZA Integrative Orthology | DNA endoreduplication | AT3G20780 |
| GO:0007389 | ISO | PLAZA Integrative Orthology | pattern specification process | AT3G20780 |
| GO:0009741 | ISO | PLAZA Integrative Orthology | response to brassinosteroid | AT3G20780 |
| GO:0010026 | ISO | PLAZA Integrative Orthology | trichome differentiation | AT3G20780 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003918 | IEA | InterPro | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0042802 | ISO | PLAZA Integrative Orthology | identical protein binding | AT3G20780 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G20780 |
| GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | Os09g0279600 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015320 | DNA topoisomerase VI, subunit B, transducer |
| IPR005734 | DNA topoisomerase VI, subunit B |
| IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |
| IPR020568 | Ribosomal protein S5 domain 2-type fold |
| IPR010979 | Ribosomal protein S13-like, H2TH |
| IPR014721 | Ribosomal protein S5 domain 2-type fold, subgroup |
| Mapman id | Description |
|---|---|
| 13.2.6.1.2 | Cell cycle organisation.DNA replication.endoreduplication.somatic DNA topoisomerase VI complex.subunit TOP6B |