Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 7.6e-141 503.8 254 100.0
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 4.3e-120 434.9 285 80.4
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 1.3e-60 237.3 289 52.9
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 3.8e-60 235.7 289 52.6
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 5.0e-52 208.8 295 47.1
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 4.3e-51 205.7 263 49.8
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 9.8e-48 194.5 292 46.2
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 2.9e-47 193.0 288 45.8
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 1.3e-44 184.1 294 42.9
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 3.0e-44 183.0 296 42.9
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 1.1e-43 181.0 296 42.6
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 2.8e-26 123.2 304 35.9
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 1.1e-25 121.3 284 32.7
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 5.2e-25 119.0 77 71.4
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 7.6e-24 115.2 269 33.5
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 1.7e-23 114.0 301 31.6
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 2.9e-23 113.2 166 44.6
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 3.8e-23 112.8 300 30.0
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 4.9e-23 112.5 285 33.3
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 2.4e-22 110.2 293 32.1
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 3.2e-22 109.8 304 31.6
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 5.4e-22 109.0 282 31.2
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 1.2e-21 107.8 269 32.3
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 1.6e-21 107.5 269 32.3
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 4.6e-21 105.9 293 29.0
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 6.0e-21 105.5 294 28.6
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 5.6e-19 99.0 288 30.6
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 9.6e-19 98.2 259 31.7
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 3.6e-18 96.3 223 34.1
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 8.1e-18 95.1 80 48.8
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 8.1e-18 95.1 264 32.2
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 1.1e-17 94.7 224 33.5
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 2.4e-17 93.6 293 31.4
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 2.4e-17 93.6 76 53.9
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 3.1e-17 93.2 216 33.3
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 4.0e-17 92.8 120 38.3
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 4.0e-17 92.8 227 33.5
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 6.9e-17 92.0 288 31.9
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 6.9e-17 92.0 277 30.7
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 6.9e-17 92.0 79 53.2
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 9.0e-17 91.7 274 30.7
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 9.0e-17 91.7 262 33.6
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.2e-16 91.3 107 42.1
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 1.5e-16 90.9 279 30.5
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 3.4e-16 89.7 227 35.7
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.4e-16 89.7 262 33.2
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 5.8e-16 89.0 285 28.8
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.3e-15 87.8 263 32.3
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 1.3e-15 87.8 81 46.9
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 2.2e-15 87.0 226 33.2
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 2.2e-15 87.0 226 33.2
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 3.8e-15 86.3 224 33.0
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 3.8e-15 86.3 224 33.0
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 3.8e-15 86.3 306 31.4
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 4.9e-15 85.9 99 40.4
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 6.4e-15 85.5 117 38.5
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 6.4e-15 85.5 260 30.0
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 8.4e-15 85.1 297 29.0
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 2.4e-14 83.6 296 29.1
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 3.2e-14 83.2 224 33.0
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 4.2e-14 82.8 287 26.8
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 4.2e-14 82.8 121 43.8
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 5.4e-14 82.4 82 48.8
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 7.1e-14 82.0 302 27.2
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 9.3e-14 81.6 226 30.5
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 1.2e-13 81.3 80 46.2
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 1.6e-13 80.9 125 39.2
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 1.6e-13 80.9 81 46.9
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 1.6e-13 80.9 117 41.0
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.5e-13 79.7 110 41.8
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 3.5e-13 79.7 91 42.9
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 6.0e-13 79.0 234 33.3
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 6.0e-13 79.0 128 35.2
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 1.0e-12 78.2 309 28.2
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 1.3e-12 77.8 296 29.1
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 1.8e-12 77.4 241 32.0
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 2.3e-12 77.0 272 32.4
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 3.0e-12 76.6 122 42.6
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 5.1e-12 75.9 182 31.9
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 5.1e-12 75.9 304 25.0
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 5.1e-12 75.9 117 35.9
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 8.7e-12 75.1 294 27.6
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.1e-11 74.7 269 27.9
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 1.5e-11 74.3 294 27.9
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 1.9e-11 73.9 270 28.1
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 1.9e-11 73.9 284 27.1
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.9e-11 73.9 267 29.6
TPR.G24034 Trifolium pratense HOM05D006136 ORTHO05D007244 4.3e-11 72.8 85 47.1
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 5.6e-11 72.4 244 29.5
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 7.4e-11 72.0 208 29.8
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 7.4e-11 72.0 318 26.1
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 1.3e-10 71.2 299 26.1
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 1.6e-10 70.9 164 31.1
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 1.6e-10 70.9 204 30.4
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 2.8e-10 70.1 234 27.4
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.6e-10 69.7 212 30.2
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 1.4e-09 67.8 244 29.1
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 1.8e-09 67.4 212 29.7
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 2.4e-09 67.0 254 27.2
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 4.5e-08 62.8 273 26.7
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 9.9e-08 61.6 271 28.0
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 2.2e-07 60.5 274 22.6
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 1.4e-06 57.8 90 41.1
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 5.5e-06 55.8 30 80.0


User provided reference genes

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