Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R7F8PK Arachis hypogaea HOM05D003148 ORTHO05D003894 1.4e-142 509.6 254 100.0
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 4.5e-16 89.4 44 100.0
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 4.5e-16 89.4 44 100.0
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 4.9e-15 85.9 44 93.2
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 2.4e-14 83.6 44 90.9
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 2.4e-14 83.6 44 90.9
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 3.2e-14 83.2 44 90.9
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 3.2e-14 83.2 44 90.9
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 3.2e-14 83.2 44 90.9
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 3.2e-14 83.2 44 88.6
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 3.2e-14 83.2 44 90.9
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 4.2e-14 82.8 67 64.2
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 4.2e-14 82.8 44 88.6
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 4.2e-14 82.8 44 90.9
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 4.2e-14 82.8 44 90.9
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 5.4e-14 82.4 44 88.6
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 7.1e-14 82.0 44 90.9
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 7.1e-14 82.0 44 90.9
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 9.3e-14 81.6 44 90.9
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 9.3e-14 81.6 44 90.9
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 9.3e-14 81.6 44 88.6
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 9.3e-14 81.6 44 86.4
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 9.3e-14 81.6 44 88.6
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 9.3e-14 81.6 44 88.6
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 1.2e-13 81.3 44 88.6
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 1.2e-13 81.3 44 88.6
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 1.2e-13 81.3 44 88.6
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.2e-13 81.3 44 88.6
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.2e-13 81.3 44 88.6
FAN25G2336 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.2e-13 81.3 44 88.6
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 1.2e-13 81.3 44 90.9
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 1.6e-13 80.9 44 90.9
Oeu062600.1 Olea europaea HOM05D003148 ORTHO05D003894 1.6e-13 80.9 47 85.1
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 1.6e-13 80.9 47 85.1
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 2.1e-13 80.5 44 88.6
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 2.1e-13 80.5 44 88.6
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 2.1e-13 80.5 44 86.4
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 2.7e-13 80.1 44 86.4
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 2.7e-13 80.1 44 86.4
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 2.7e-13 80.1 44 86.4
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 2.7e-13 80.1 44 86.4
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 2.7e-13 80.1 44 88.6
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 2.7e-13 80.1 47 83.0
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 2.7e-13 80.1 44 88.6
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 2.7e-13 80.1 44 86.4
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 2.7e-13 80.1 44 86.4
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 3.5e-13 79.7 44 88.6
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 3.5e-13 79.7 44 86.4
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 3.5e-13 79.7 44 86.4
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 3.5e-13 79.7 44 86.4
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 3.5e-13 79.7 44 88.6
HanXRQChr05g0159101 Helianthus annuus HOM05D003148 ORTHO05D003894 3.5e-13 79.7 44 88.6
HanXRQChr05g0159391 Helianthus annuus HOM05D003148 ORTHO05D003894 3.5e-13 79.7 44 88.6
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 3.5e-13 79.7 44 88.6
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 3.5e-13 79.7 44 88.6
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 4.6e-13 79.3 44 86.4
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 4.6e-13 79.3 44 86.4
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 6.0e-13 79.0 44 86.4
CSS0016614 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 6.0e-13 79.0 55 70.9
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 6.0e-13 79.0 45 91.1
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 6.0e-13 79.0 44 86.4
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 6.0e-13 79.0 44 84.1
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 7.9e-13 78.6 44 84.1
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 7.9e-13 78.6 44 84.1
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 7.9e-13 78.6 44 84.1
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 7.9e-13 78.6 44 86.4
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 1.0e-12 78.2 49 77.6
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 1.0e-12 78.2 44 86.4
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 1.0e-12 78.2 44 84.1
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 1.0e-12 78.2 44 84.1
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 1.0e-12 78.2 44 84.1
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 1.0e-12 78.2 44 81.8
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.0e-12 78.2 47 80.9
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 1.0e-12 78.2 47 83.0
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 1.0e-12 78.2 44 84.1
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 1.0e-12 78.2 44 86.4
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 1.0e-12 78.2 44 86.4
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 1.0e-12 78.2 44 86.4
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 1.0e-12 78.2 44 84.1
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 1.3e-12 77.8 44 84.1
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 1.3e-12 77.8 44 84.1
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 1.3e-12 77.8 44 84.1
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 1.3e-12 77.8 44 84.1
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 1.3e-12 77.8 44 84.1
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 1.3e-12 77.8 44 84.1
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 1.3e-12 77.8 45 84.4
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 1.3e-12 77.8 47 80.9
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 1.3e-12 77.8 44 84.1
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 1.3e-12 77.8 45 88.9
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 1.8e-12 77.4 44 84.1
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 1.8e-12 77.4 44 84.1
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 1.8e-12 77.4 44 86.4
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 1.8e-12 77.4 44 84.1
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 1.8e-12 77.4 44 84.1
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 2.3e-12 77.0 44 86.4
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 2.3e-12 77.0 44 84.1
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 2.3e-12 77.0 44 84.1
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 3.0e-12 76.6 44 84.1
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 3.0e-12 76.6 44 79.5
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 3.9e-12 76.3 44 81.8
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 3.9e-12 76.3 44 81.8
TPR.G16586 Trifolium pratense HOM05D003148 ORTHO05D003894 3.9e-12 76.3 44 81.8
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 5.1e-12 75.9 44 79.5
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 5.1e-12 75.9 44 79.5
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 5.1e-12 75.9 44 79.5
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 5.1e-12 75.9 48 83.3
Nn1g03580 Nelumbo nucifera HOM05D003148 ORTHO05D003894 5.1e-12 75.9 44 81.8
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 5.1e-12 75.9 44 79.5
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 5.1e-12 75.9 55 74.5
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 6.7e-12 75.5 43 83.7
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 6.7e-12 75.5 44 79.5
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 6.7e-12 75.5 44 79.5
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 6.7e-12 75.5 44 79.5
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 6.7e-12 75.5 47 80.9
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 6.7e-12 75.5 47 80.9
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 6.7e-12 75.5 43 83.7
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 6.7e-12 75.5 44 84.1
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 6.7e-12 75.5 44 81.8
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 8.7e-12 75.1 44 84.1
Glyma.08G313300 Glycine max HOM05D003148 ORTHO05D003894 8.7e-12 75.1 43 83.7
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 8.7e-12 75.1 44 79.5
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 8.7e-12 75.1 44 81.8
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 1.1e-11 74.7 44 81.8
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 1.1e-11 74.7 44 81.8
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 1.5e-11 74.3 44 84.1
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.5e-11 74.3 44 77.3
CSS0045288 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 1.9e-11 73.9 44 81.8
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 2.5e-11 73.6 44 81.8
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 2.5e-11 73.6 44 77.3
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 3.3e-11 73.2 45 84.4
Atru.chr1.1 Acer truncatum HOM05D003148 ORTHO05D003894 4.3e-11 72.8 44 81.8
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 5.6e-11 72.4 44 79.5
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 1.3e-10 71.2 44 79.5
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.3e-10 71.2 47 74.5
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.3e-10 71.2 47 74.5
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.3e-10 71.2 47 74.5
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 1.6e-10 70.9 44 77.3
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 2.1e-10 70.5 47 74.5
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 2.1e-10 70.5 44 72.7
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 2.8e-10 70.1 47 72.3
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 2.8e-10 70.1 47 74.5
SEGI_38397 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 3.6e-10 69.7 47 66.0
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 4.8e-10 69.3 44 75.0
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 8.1e-10 68.6 44 75.0
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 8.1e-10 68.6 47 72.3
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 8.1e-10 68.6 47 72.3
Lj6A79G3 Lonicera japonica HOM05D003148 ORTHO05D003894 2.4e-09 67.0 44 70.5
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 3.1e-09 66.6 43 74.4
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 4.0e-09 66.2 47 68.1
arahy.Tifrunner.gnm1.ann1.PEMB6S Arachis hypogaea HOM05D000092 ORTHO05D000042 9.0e-09 65.1 49 67.3
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.9e-07 60.1 44 63.6
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.4e-06 57.8 42 66.7
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.9e-06 57.4 42 64.3
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 3.2e-06 56.6 43 65.1


User provided reference genes

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