Gene: AT1G50840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G50840
  • Transcript Identifier AT1G50840.2
  • Gene Type Coding gene
  • Location Chr1 : 18839277-18844313 : positive

Gene Family Information

  • ID HOM05D003148
  • #Genes/#Species 217/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G50840.2
  • symbol POLGAMMA2
  • Alias PolIA,polymerase I A
  • uniprot F4I6M1

Descriptions

  • Description polymerase gamma 2
  • Computational description polymerase gamma 2 (POLGAMMA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA polymerase A domain (InterPro:IPR002298), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: polymerase gamma 1 (TAIR:AT3G20540.1); Has 11974 Blast hits to 10011 proteins in 2572 species: Archae - 0; Bacteria - 6712; Metazoa - 149; Fungi - 0; Plants - 122; Viruses - 286; Other Eukaryotes - 4705 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006260
IEA
GOA DatabaseDNA replication
GO:0006260
IEA
InterProDNA replication
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0006261
IEA
Gene OntologyDNA-dependent DNA replication
GO:0006261
IEA
InterProDNA-dependent DNA replication
GO:0006264
IMP
Gene Ontologymitochondrial DNA replication1
GO:0033259
IMP
Gene Ontologyplastid DNA replication1
GO:0006302
IBA
Gene Ontologydouble-strand break repair2
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0071897
IEA
GOA DatabaseDNA biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0003887
IBA
TAS, IEA
Gene OntologyDNA-directed DNA polymerase activity2 3
GO:0003887
IEA
InterProDNA-directed DNA polymerase activity
GO:0003677
IEA
Gene OntologyDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0008408
IEA
Gene Ontology3'-5' exonuclease activity
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
IMP
Gene Ontologyplastid1
GO:0005634
ISM
Gene Ontologynucleus
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA
Gene Ontologymitochondrion5
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA
Gene Ontologychloroplast5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012337 Ribonuclease H-like superfamily
IPR043502 DNA/RNA polymerase superfamily
IPR002298 DNA polymerase A
IPR001098 DNA-directed DNA polymerase, family A, palm domain
IPR036397 Ribonuclease H superfamily
IPR002562 3'-5' exonuclease domain
Mapman id Description
13.5.1 Cell cycle organisation.organellar DNA replication.DNA polymerase (POP)