Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1320.1 673 100.0
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1311.2 673 99.1
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1304.7 673 98.7
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1283.1 711 93.2
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1204.1 669 91.0
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1190.3 670 90.4
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1187.6 669 90.3
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1183.3 670 89.3
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1168.3 663 89.0
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1164.8 668 88.0
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1164.8 669 87.7
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1158.3 644 91.0
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1155.6 668 86.8
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1149.8 669 86.7
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1149.8 669 87.3
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1147.1 668 86.8
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1144.0 671 86.6
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1140.9 669 86.2
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1138.6 668 85.9
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1137.5 668 85.3
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1135.6 668 85.3
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1135.6 668 85.3
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1134.4 668 85.9
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1134.0 669 85.5
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1132.5 668 85.8
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1132.5 674 85.3
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1132.5 667 85.9
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1132.5 669 85.8
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1129.0 670 84.8
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1126.7 667 85.6
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1125.9 670 85.7
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1122.8 670 83.7
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1122.8 670 84.5
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1122.5 679 85.1
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1115.9 700 82.0
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1114.8 670 84.2
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1113.2 669 84.5
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1107.8 669 83.6
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1106.7 661 85.2
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1104.0 669 82.2
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1102.0 669 83.7
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1100.9 670 82.5
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1100.5 661 83.5
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1100.1 657 84.8
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1100.1 657 84.8
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1094.0 688 82.0
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 663 82.8
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1092.4 671 81.8
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1091.6 663 82.5
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1091.3 671 81.7
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1087.0 675 82.5
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1085.5 671 81.7
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 663 82.1
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1083.6 663 82.2
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1083.6 671 80.8
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1082.8 671 80.6
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1082.4 673 82.0
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1082.4 679 81.3
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1079.3 671 81.1
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1078.9 668 82.9
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1077.4 671 80.9
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1075.1 664 81.5
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 4.6e-312 1074.7 675 80.3
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 4.6e-312 1073.9 664 81.5
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 1.8e-311 1072.0 671 80.3
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 6.9e-311 1070.1 691 79.6
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 2.7e-310 1068.1 685 79.1
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 7.7e-310 1066.6 693 79.7
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.5e-308 1062.4 674 80.1
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 2.5e-308 1061.6 693 78.2
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 4.0e-306 1054.3 702 76.6
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.5e-305 1052.4 680 80.0
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 4.9e-304 1047.3 673 78.3
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 2.7e-302 1041.6 753 74.0
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 7.8e-302 1040.0 674 79.4
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 6.6e-301 1036.9 729 74.8
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 1.9e-300 1035.4 648 79.0
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 4.4e-297 1024.2 643 79.3
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 6.6e-293 1010.4 597 85.9
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.1e-291 1003.4 692 74.9
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.7e-288 994.6 654 77.8
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 3.2e-287 991.5 670 77.2
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 4.0e-282 974.5 668 77.8
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 7.6e-281 970.3 670 75.4
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 4.4e-273 944.5 581 80.9
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 3.2e-271 938.3 668 70.7
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.2e-270 936.4 647 71.1
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.2e-270 936.4 592 79.7
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 4.3e-268 927.9 676 72.3
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 3.6e-267 924.9 651 72.4
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.6e-262 909.4 656 73.9
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 6.7e-261 904.0 668 68.6
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 3.1e-258 895.2 661 67.6
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 7.9e-254 880.6 637 72.8
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 5.1e-253 877.9 511 84.3
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.1e-244 850.1 701 65.9
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.5e-241 838.2 701 64.8
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 7.7e-233 810.8 445 89.4
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 1.2e-212 743.8 468 78.4
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 9.1e-202 707.6 666 55.6
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 9.8e-180 634.4 535 62.4
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 2.2e-179 633.3 665 51.7
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.9e-178 630.2 382 79.6
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 4.1e-178 629.0 368 87.8
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 1.7e-176 623.6 365 86.6
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 1.4e-170 604.0 675 49.5
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.7e-169 599.7 361 84.5
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 3.0e-168 596.3 382 80.9
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 1.4e-146 524.2 306 85.3
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.5e-140 504.2 367 72.2
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 3.8e-139 499.6 586 50.7
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 3.0e-136 490.0 310 78.4
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 6.7e-136 488.8 309 78.6
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 7.7e-116 422.2 298 73.5
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 3.3e-111 406.8 467 51.0
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 8.0e-81 305.8 216 73.6
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.6e-79 300.8 219 70.3
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.2e-65 255.4 176 74.4
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 3.5e-60 237.3 220 64.1
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 4.7e-57 226.9 234 58.1
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 3.1e-56 224.2 241 55.6
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 8.6e-51 206.1 104 89.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-49 201.8 148 64.9
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 5.4e-37 160.2 401 32.2
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 4.6e-36 157.1 154 56.5
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 6.7e-35 153.3 537 31.1
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 1.5e-34 152.1 87 85.1
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.9e-34 151.8 87 85.1
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.6e-33 148.7 87 83.9
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.8e-33 147.1 104 78.8
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 1.4e-32 145.6 107 69.2
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 7.4e-26 123.2 86 74.4
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 6.2e-25 120.2 114 56.1
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 5.3e-24 117.1 68 89.7
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 1.2e-23 115.9 68 88.2
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 2.0e-23 115.2 82 75.6
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 3.3e-18 97.8 55 85.5
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 4.3e-18 97.4 54 87.0
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 6.3e-17 93.6 97 60.8
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.1e-16 91.3 82 64.6
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 5.3e-16 90.5 49 95.9
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 2.6e-15 88.2 89 59.6
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 4.5e-15 87.4 49 91.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 4.2e-13 80.9 155 37.4
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 7.2e-13 80.1 63 69.8
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.6e-12 79.0 68 52.9
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.8e-11 75.5 43 81.4
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 7.4e-10 70.1 62 59.7
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.4e-10 70.1 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.4e-08 65.9 105 43.8
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.4e-08 65.1 43 69.8
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 2.2e-06 58.5 33 87.9
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 2.9e-06 58.2 33 93.9
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 3.8e-06 57.8 40 65.0
arahy.Tifrunner.gnm1.ann1.NDK424 Arachis hypogaea HOM05D000919 ORTHO05D014896 6.5e-06 57.0 58 58.6
TPR.G29746 Trifolium pratense HOM05D004763 ORTHO05D412220 6.5e-06 57.0 37 70.3


User provided reference genes

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