Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 0.0e+00 1325.8 688 100.0
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 0.0e+00 1256.9 687 95.1
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 0.0e+00 1094.7 598 93.8
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 0.0e+00 1088.6 597 93.8
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 1.9e-226 789.6 605 69.3
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 7.1e-226 787.7 627 67.5
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.6e-225 786.6 626 67.1
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 2.7e-225 785.8 626 66.9
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 7.9e-225 784.3 616 69.6
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.1e-223 780.4 626 66.5
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 4.3e-223 778.5 624 66.5
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.6e-222 776.5 608 68.4
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.2e-217 760.4 582 69.4
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 6.5e-211 738.0 612 62.6
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 6.5e-211 738.0 615 62.8
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 5.1e-208 728.4 610 62.6
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.6e-206 723.4 616 62.0
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.2e-206 723.0 616 62.2
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.8e-206 722.6 616 62.0
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 5.3e-205 718.4 610 61.8
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 9.0e-205 717.6 619 61.7
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.0e-203 714.1 613 61.7
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.7e-203 713.4 619 61.1
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 2.9e-203 712.6 615 61.3
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 2.9e-203 712.6 625 61.0
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.2e-201 707.2 625 60.2
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 7.9e-201 704.5 627 60.4
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 3.9e-200 702.2 624 60.1
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 6.7e-200 701.4 628 59.6
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 2.5e-199 699.5 618 61.3
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 3.7e-198 695.7 613 60.0
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.4e-197 693.7 621 60.4
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.4e-197 693.7 601 62.1
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.1e-197 692.6 617 60.8
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 4.1e-197 692.2 616 61.4
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.1e-197 692.2 616 61.5
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.5e-196 690.3 615 60.3
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 4.5e-196 688.7 626 59.3
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.3e-195 687.2 627 60.3
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.7e-195 686.8 616 60.9
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.7e-195 686.8 616 61.2
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 5.0e-195 685.3 623 59.4
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 6.5e-195 684.9 621 59.6
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 3.2e-194 682.6 631 60.2
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.6e-193 680.2 614 60.7
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.1e-191 674.1 598 60.9
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 7.4e-191 671.4 610 58.9
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 6.3e-190 668.3 602 59.3
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.1e-189 667.5 610 58.9
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 9.1e-189 664.5 595 59.7
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.2e-188 664.1 606 59.9
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 5.9e-188 661.8 593 58.9
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.7e-187 660.2 624 57.1
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 5.0e-187 658.7 604 58.8
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 5.0e-187 658.7 621 58.3
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 2.5e-186 656.4 612 58.5
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.5e-186 656.4 595 58.5
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 9.4e-186 654.4 621 56.7
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.6e-185 653.7 541 67.5
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 2.7e-185 652.9 612 57.2
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 2.7e-185 652.9 612 58.0
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 3.6e-185 652.5 617 58.0
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 6.1e-185 651.7 620 57.3
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 8.0e-185 651.4 603 58.9
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 1.0e-184 651.0 628 58.8
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.8e-184 650.2 611 57.3
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.0e-184 649.4 615 56.9
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.9e-184 649.0 604 57.8
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 6.7e-184 648.3 603 58.5
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.1e-183 647.5 602 58.3
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 2.0e-183 646.7 603 58.2
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 5.7e-183 645.2 610 57.4
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 9.7e-183 644.4 624 56.6
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.7e-182 643.7 701 52.4
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 2.2e-182 643.3 617 56.9
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.4e-181 640.6 619 55.4
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 9.1e-181 637.9 569 58.5
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 2.2e-179 633.3 617 55.8
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 5.0e-179 632.1 611 56.0
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 6.5e-179 631.7 615 56.3
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.5e-178 630.6 608 55.9
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 2.1e-177 626.7 633 55.6
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.6e-177 625.9 602 57.0
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.6e-177 625.9 602 57.0
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 4.7e-177 625.5 599 57.3
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 6.1e-177 625.2 607 56.0
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.0e-176 622.9 547 61.6
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 4.0e-176 622.5 603 57.7
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 5.2e-176 622.1 616 55.8
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 6.7e-176 621.7 601 56.2
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.5e-175 620.5 595 56.0
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 2.8e-174 616.3 616 55.7
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 8.2e-174 614.8 600 55.5
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.1e-173 614.4 595 57.0
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 2.4e-173 613.2 600 55.3
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 2.4e-173 613.2 600 55.3
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 5.3e-173 612.1 597 56.6
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 2.0e-172 610.1 599 56.8
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 2.0e-172 610.1 595 57.0
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 7.7e-172 608.2 599 56.6
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 9.8e-167 591.3 592 55.4
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 5.4e-165 585.5 613 54.0
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.7e-163 580.5 515 59.8
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 1.4e-160 570.9 595 53.1
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.7e-158 563.9 598 53.0
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 2.8e-153 546.6 531 56.9
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.7e-148 530.0 620 48.5
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.1e-146 524.6 577 51.1
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 6.4e-142 508.8 604 48.8
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 4.1e-141 506.1 663 44.5
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.9e-139 499.6 512 52.7
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.5e-138 497.7 597 49.1
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.5e-138 496.9 608 48.8
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.6e-137 494.2 604 46.4
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 7.5e-135 485.3 604 48.2
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.2e-125 453.4 454 56.8
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 2.7e-116 423.7 495 48.7
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 4.3e-114 416.4 475 48.8
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 5.8e-111 406.0 507 48.3
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 6.9e-104 382.5 655 38.5
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 4.9e-102 376.3 648 39.2
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.2e-100 371.7 400 56.0
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.8e-99 367.9 515 44.7
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 7.4e-98 362.5 423 51.1
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 2.9e-94 350.5 408 52.0
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 3.2e-93 347.1 337 56.4
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.4e-85 318.9 376 52.1
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.6e-84 316.6 380 51.8
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.1e-84 316.2 426 44.6
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 5.1e-83 313.2 601 37.3
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.7e-81 308.1 262 61.8
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.0e-75 288.9 233 63.5
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 7.4e-74 282.7 237 60.8
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 2.4e-72 277.7 551 37.0
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 2.1e-60 238.0 196 62.2
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 1.8e-59 235.0 760 28.4
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 3.4e-58 230.7 148 72.3
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 3.7e-57 227.3 363 41.3
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-56 225.7 363 41.0
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 3.5e-55 220.7 359 41.2
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 8.6e-46 189.5 560 30.5
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 8.6e-46 189.5 185 56.2
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 2.3e-43 181.4 147 61.2
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 4.9e-41 173.7 521 30.1
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.9e-37 161.8 553 29.5
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 7.3e-37 159.8 332 34.9
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 2.8e-28 131.3 249 41.0
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 2.8e-20 104.8 82 61.0
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 3.1e-19 101.3 60 75.0
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 5.1e-14 84.0 245 29.8
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 2.8e-12 78.2 46 82.6
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 1.4e-11 75.9 111 47.7
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 6.8e-11 73.6 79 53.2
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 4.9e-09 67.4 68 60.3
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 2.7e-07 61.6 40 62.5


User provided reference genes

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