Gene: PGR042G2640

General Information

Structural Information

  • Species Punica granatum
  • Gene Identifier PGR042G2640
  • Transcript Identifier PGR042G2640.01
  • Gene Type Coding gene
  • Location NC_045130.1 : 8984050-8986824 : positive

Gene Family Information

  • ID HOM05D004635
  • #Genes/#Species 157/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pid XP_031393793.1
  • name LOC116205352
  • name XM_031537933.1
  • id gene-LOC116205352
  • uniprot A0A6P8DPF7

Descriptions

  • product 20S-pre-rRNA D-site endonuclease nob1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT5G41190
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT5G41190
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT5G41190
GO:0000469
IEA
GOA Databasecleavage involved in rRNA processing
GO:0000469
IEA
InterProcleavage involved in rRNA processing
GO:0042274
IEA
GOA Databaseribosomal small subunit biogenesis
GO:0042274
IEA
InterProribosomal small subunit biogenesis
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004521
IEA
GOA Databaseendoribonuclease activity
GO:0004521
IEA
InterProendoribonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT5G41190
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G41190

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017117 Ribonuclease Nob1, eukaryote
IPR033411 Ribonuclease, PIN domain
IPR036283 NOB1 zinc finger-like superfamily
IPR014881 Nin one binding (NOB1) Zn-ribbon-like
IPR039907 RNA-binding protein NOB1
Mapman id Description
17.1.1.8.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS1 rRNA removal.pre-rRNA processing endonuclease (NOB1)