Gene: PGSC0003DMG400029793

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400029793
  • Transcript Identifier PGSC0003DMT400076613
  • Gene Type Coding gene
  • Location ST4.03ch12 : 9943345-9946573 : negative

Gene Family Information

  • ID HOM05D004635
  • #Genes/#Species 157/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37448644
  • id PGSC0003DMG400029793.v4.03
  • uniprot M1CX29

Descriptions

  • Description RNA-binding protein nob1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0030490
IBA
GOA Databasematuration of SSU-rRNA
GO:0042274
ISO
PLAZA Homology (enrichment)ribosomal small subunit biogenesis HOM05D004635
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT5G41190
GO:0000469
ISO
PLAZA Integrative Orthologycleavage involved in rRNA processing AT5G41190
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT5G41190
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT5G41190

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004521
IBA
GOA Databaseendoribonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030688
IBA
GOA Databasepreribosome, small subunit precursor
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G41190
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT5G41190

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039907 RNA-binding protein NOB1
IPR014881 Nin one binding (NOB1) Zn-ribbon-like
IPR036283 NOB1 zinc finger-like superfamily
IPR033411 Ribonuclease, PIN domain
Mapman id Description
17.1.1.8.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS1 rRNA removal.pre-rRNA processing endonuclease (NOB1)