Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2605.5 1271 100.0
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2592.4 1271 99.3
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 2168.3 1269 81.3
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2161.0 1268 81.5
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 2154.4 1274 80.8
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 2154.4 1270 80.8
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2147.5 1268 80.7
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 2100.5 1272 79.6
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 2094.3 1271 79.2
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 2080.8 1272 78.4
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 2061.6 1271 78.0
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2055.4 1273 78.4
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2033.8 1273 77.2
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1905.6 1276 72.2
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1899.8 1275 72.0
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1890.5 1277 71.9
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1876.7 1276 71.5
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1870.5 1275 70.7
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1870.1 1275 70.7
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1864.0 1277 70.9
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1862.8 1275 70.6
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1857.8 1275 71.1
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1856.6 1275 70.6
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1856.3 1279 70.7
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1854.3 1274 70.9
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1852.0 1278 70.8
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1848.6 1276 70.5
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1847.4 1274 70.3
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1845.5 1275 70.6
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1842.4 1272 70.6
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1842.0 1273 71.4
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1841.6 1275 69.8
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1825.1 1275 70.3
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1824.7 1235 72.7
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1820.8 1275 70.0
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1820.4 1275 70.1
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1818.5 1301 69.0
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1813.9 1269 68.6
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1808.5 1271 69.0
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1806.6 1277 68.6
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1775.4 1285 67.5
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1761.9 1270 67.9
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1749.6 1270 67.2
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1743.0 1268 66.5
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1741.1 1274 66.6
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1737.2 1242 67.1
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1736.5 1279 66.6
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1729.1 1270 66.8
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1723.4 1272 66.2
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1718.4 1275 65.8
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1716.0 1353 62.1
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1710.7 1376 61.3
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1704.9 1273 64.7
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1704.5 1276 64.7
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1698.7 1292 64.6
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1697.9 1279 64.9
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1697.6 1278 65.1
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1694.1 1277 64.4
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1692.9 1282 64.4
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1691.4 1280 65.0
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1691.4 1278 64.6
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1686.4 1277 64.7
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1679.8 1277 64.3
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1671.0 1270 64.6
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1669.4 1275 63.1
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1668.7 1278 64.2
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1666.0 1275 62.9
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1660.6 1279 63.6
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1660.2 1275 63.1
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1659.4 1271 63.7
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1657.5 1279 64.1
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1657.1 1279 64.0
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1654.4 1279 63.8
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1651.0 1285 63.8
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1651.0 1275 63.1
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1647.5 1285 63.7
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1645.9 1275 63.5
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1629.4 1271 61.8
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1619.8 1369 59.8
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1617.8 1275 63.4
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1615.5 1222 64.6
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1613.6 1287 62.2
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1604.0 1188 67.2
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1600.9 1179 65.7
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1559.7 1268 61.8
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1559.3 1275 60.6
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1513.0 1041 69.7
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1507.3 1034 71.3
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1481.5 1042 67.8
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1467.2 1274 56.6
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1433.7 1277 55.6
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1424.8 1048 65.2
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1394.0 1272 57.2
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1362.1 1292 54.0
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1329.3 1274 56.0
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1292.3 1231 53.0
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1256.9 1161 55.2
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1237.2 939 65.7
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1176.0 940 63.7
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1169.5 828 67.9
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1169.1 875 63.0
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1164.1 831 66.2
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1154.0 805 71.4
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1142.5 1327 46.9
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1128.6 1198 49.4
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1120.5 830 63.4
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1109.0 940 61.1
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1097.4 1334 46.7
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1093.2 1265 47.6
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1076.2 776 65.3
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.7e-311 1073.2 1332 46.2
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 4.6e-303 1045.0 762 66.7
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 2.1e-300 1036.2 1135 49.7
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.1e-294 1015.0 690 70.6
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.1e-288 997.3 767 65.1
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.8e-227 793.9 1456 34.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.4e-222 777.7 543 68.1
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.2e-220 770.4 622 62.1
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.7e-212 744.2 500 71.8
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 9.8e-205 718.4 609 54.7
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 4.1e-195 686.4 499 63.3
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 2.9e-180 637.1 470 67.9
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 1.3e-132 478.8 368 68.2
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 8.2e-127 459.5 397 60.2
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 1.5e-125 455.3 322 70.5
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.3e-124 452.2 343 65.6
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 6.5e-100 370.2 1336 26.7
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.2e-82 312.8 1239 24.9
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.4e-81 309.3 260 60.8
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.7e-52 212.6 269 46.5
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 2.1e-42 179.1 156 60.3
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.8e-36 159.5 149 53.7
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.9e-30 139.4 101 70.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.9e-23 115.5 78 67.9
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.9e-14 86.3 68 58.8
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.1e-13 82.8 46 82.6
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 6.7e-12 77.8 53 69.8
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 1.5e-11 76.6 53 67.9
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 2.8e-10 72.4 56 60.7
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 4.8e-10 71.6 152 31.6
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 6.3e-10 71.2 50 66.0
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.4e-09 70.1 95 38.9
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 5.3e-09 68.2 48 66.7
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 6.9e-09 67.8 48 66.7
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 6.9e-09 67.8 48 66.7
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 6.9e-09 67.8 133 35.3
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 9.1e-09 67.4 48 66.7
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.2e-08 67.0 44 72.7
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 2.0e-08 66.2 48 64.6
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 2.0e-08 66.2 48 64.6
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 2.0e-08 66.2 48 64.6
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 2.0e-08 66.2 48 64.6
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 2.0e-08 66.2 48 64.6
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.0e-07 63.9 80 46.2
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 5.0e-07 61.6 95 36.8
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 1.4e-06 60.1 119 29.4
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 1.9e-06 59.7 117 29.1
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 5.5e-06 58.2 189 29.1
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 5.5e-06 58.2 108 35.2
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 7.2e-06 57.8 108 35.2
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 7.2e-06 57.8 67 35.8


User provided reference genes

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