Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LNAK8N Arachis hypogaea HOM05D006688 ORTHO05D008550 2.6e-225 785.0 382 100.0
arahy.Tifrunner.gnm1.ann1.UP5FVB Arachis hypogaea HOM05D006688 ORTHO05D008550 2.2e-208 728.8 360 97.5
arahy.Tifrunner.gnm1.ann1.XSA7KG Arachis hypogaea HOM05D006688 ORTHO05D008550 1.3e-205 719.5 364 95.9
Glyma.13G106300 Glycine max HOM05D006688 ORTHO05D008550 6.6e-173 610.9 365 80.5
Glyma.17G053100 Glycine max HOM05D006688 ORTHO05D008550 8.6e-173 610.5 365 80.0
Lj4g0022709 Lotus japonicus HOM05D006688 ORTHO05D008550 8.1e-171 604.0 365 79.7
TPR.G9451 Trifolium pratense HOM05D006688 ORTHO05D008550 1.7e-168 596.3 372 78.8
Medtr4g125950 Medicago truncatula HOM05D006688 ORTHO05D008550 1.5e-164 583.2 365 78.1
Phvul.003G134700 Phaseolus vulgaris HOM05D006688 ORTHO05D008550 1.5e-164 583.2 365 77.8
Thecc.09G085200 Theobroma cacao HOM05D006688 ORTHO05D008550 1.6e-163 579.7 362 77.1
VMungo1215G1360 Vigna mungo HOM05D006688 ORTHO05D008550 1.6e-163 579.7 365 77.8
QL02p062093 Quercus lobata HOM05D006688 ORTHO05D008550 1.4e-162 576.6 389 72.8
Haze_25940 Corylus avellana HOM05D006688 ORTHO05D008550 1.2e-161 573.5 363 75.8
CiPaw.03G212300 Carya illinoinensis HOM05D006688 ORTHO05D008550 2.0e-161 572.8 363 75.2
COL.COLO4_18173 Corchorus olitorius HOM05D006688 ORTHO05D008550 1.1e-159 567.0 362 76.0
Lalb_Chr20g0118781 Lupinus albus HOM05D006688 ORTHO05D008550 1.4e-159 566.6 363 76.3
Gorai.010G084500 Gossypium raimondii HOM05D006688 ORTHO05D008550 5.4e-159 564.7 362 75.4
Gohir.D06G072500 Gossypium hirsutum HOM05D006688 ORTHO05D008550 2.1e-158 562.8 362 75.1
Gohir.A06G073600 Gossypium hirsutum HOM05D006688 ORTHO05D008550 4.6e-158 561.6 362 75.1
Atru.chr7.1629 Acer truncatum HOM05D006688 ORTHO05D008550 1.3e-157 560.1 363 73.6
MD02G1082800 Malus domestica HOM05D006688 ORTHO05D008550 1.5e-156 556.6 365 72.9
Manes.03G036200 Manihot esculenta HOM05D006688 ORTHO05D008550 9.6e-156 553.9 360 74.7
Cfa003056 Carpinus fangiana HOM05D006688 ORTHO05D000625 1.3e-155 553.5 368 73.6
FAN26G0248 Fragaria x ananassa HOM05D006688 ORTHO05D008550 1.3e-155 553.5 365 73.7
FvH4_1g07921 Fragaria vesca HOM05D006688 ORTHO05D008550 2.8e-155 552.4 365 73.7
Ca_21292_v3 Cicer arietinum L. HOM05D006688 ORTHO05D008550 1.4e-154 550.1 366 74.6
Dinv42341 Davidia involucrata HOM05D006688 ORTHO05D008550 1.4e-154 550.1 362 73.8
FAN19G1103 Fragaria x ananassa HOM05D006688 ORTHO05D008550 2.4e-154 549.3 365 73.4
Duzib150G1545 Durio zibethinus HOM05D006688 ORTHO05D000625 4.0e-154 548.5 342 76.9
FAN28G0979 Fragaria x ananassa HOM05D006688 ORTHO05D008550 3.4e-153 545.4 365 72.6
RcHm_v2.0_Chr2g0093801 Rosa chinensis HOM05D006688 ORTHO05D008550 5.8e-153 544.7 364 72.8
TAR636G2732 Trochodendron aralioides HOM05D006688 ORTHO05D008550 9.9e-153 543.9 366 70.8
CsaV3_1G040620 Cucumis sativus L. HOM05D006688 ORTHO05D008550 8.4e-152 540.8 360 71.1
Aqoxy7G01159 Aquilegia oxysepala HOM05D006688 ORTHO05D008550 2.1e-150 536.2 363 70.0
MELO3C015492.2 Cucumis melo HOM05D006688 ORTHO05D008550 7.9e-150 534.3 360 70.0
GSVIVG01015172001 Vitis vinifera HOM05D006688 ORTHO05D008550 1.0e-149 533.9 365 71.0
CSS0016517 Camellia sinensis var. sinensis HOM05D006688 ORTHO05D008550 1.4e-146 523.5 362 69.6
Potri.007G001500 Populus trichocarpa HOM05D006688 ORTHO05D008550 4.0e-146 521.9 361 69.8
Hma1.2p1_0672F.1_g201000 Hydrangea macrophylla HOM05D006688 ORTHO05D008550 9.0e-146 520.8 368 69.8
Sed0022183 Sechium edule HOM05D006688 ORTHO05D008550 8.4e-144 514.2 360 68.1
Rhsim03G0231200 Rhododendron simsii HOM05D006688 ORTHO05D008550 5.5e-143 511.5 357 70.0
PSO782G0729 Papaver somniferum HOM05D006688 ORTHO05D008550 2.7e-142 509.2 367 65.4
PSO063G5109 Papaver somniferum HOM05D006688 ORTHO05D008550 4.6e-142 508.4 367 65.9
PGR004G0903 Punica granatum HOM05D006688 ORTHO05D008550 4.6e-142 508.4 362 67.1
Lj7C679G14 Lonicera japonica HOM05D006688 ORTHO05D008550 1.3e-141 506.9 364 67.3
ClCG03G015420 Citrullus lanatus HOM05D006688 ORTHO05D008550 3.0e-141 505.8 350 69.4
Sc08g0008600 Simmondsia chinensis HOM05D006688 ORTHO05D008550 1.2e-137 493.8 358 66.2
Thhalv10022744m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 1.5e-137 493.4 361 65.4
Cc06_g11640 Coffea canephora HOM05D006688 ORTHO05D008550 2.0e-137 493.0 359 64.9
Nitab4.5_0001519g0100 Nicotiana tabacum HOM05D006688 ORTHO05D008550 4.5e-137 491.9 361 65.9
Sabra07G0001100 Salix brachista HOM05D006688 ORTHO05D008550 1.3e-136 490.3 405 61.7
Sopen07g019540 Solanum pennellii HOM05D006688 ORTHO05D008550 1.7e-136 490.0 358 65.1
vmacro06303 Vaccinium macrocarpon HOM05D006688 ORTHO05D008550 1.1e-135 487.3 357 67.5
CARHR109870 Cardamine hirsuta HOM05D006688 ORTHO05D008550 2.5e-135 486.1 361 64.8
AL3G48850 Arabidopsis lyrata HOM05D006688 ORTHO05D008550 3.2e-135 485.7 361 64.5
Nitab4.5_0003606g0020 Nicotiana tabacum HOM05D006688 ORTHO05D008550 7.1e-135 484.6 360 65.3
Carub.0003s3371 Capsella rubella HOM05D006688 ORTHO05D008550 1.2e-134 483.8 361 63.7
Psat7g043880 Pisum sativum HOM05D006688 ORTHO05D008550 7.9e-134 481.1 313 73.8
BcaC06g36575 Brassica carinata HOM05D006688 ORTHO05D008550 1.3e-133 480.3 361 64.5
C07p02720 Brassica napus HOM05D006688 ORTHO05D008550 3.9e-133 478.8 361 64.3
EL10Ac8g19177 Beta vulgaris HOM05D006688 ORTHO05D008550 5.1e-133 478.4 366 64.2
BolC7t40672H Brassica oleracea HOM05D006688 ORTHO05D008550 5.1e-133 478.4 361 64.3
AT2G19430 Arabidopsis thaliana HOM05D006688 ORTHO05D008550 6.7e-133 478.0 361 63.2
BraA07t27924Z Brassica rapa HOM05D006688 ORTHO05D008550 6.7e-133 478.0 361 64.3
AUR62029033 Chenopodium quinoa HOM05D006688 ORTHO05D008550 8.7e-133 477.6 364 63.7
ECA232G4161 Erigeron canadensis HOM05D006688 ORTHO05D008550 8.7e-133 477.6 363 63.6
Aa31LG8G16440 Aethionema arabicum HOM05D006688 ORTHO05D008550 1.9e-132 476.5 362 63.3
MSTRG.10542 Avicennia marina HOM05D006688 ORTHO05D008550 2.5e-132 476.1 362 64.6
A07p01330 Brassica napus HOM05D006688 ORTHO05D008550 1.6e-131 473.4 360 63.9
Hund06662 Selenicereus undatus HOM05D006688 ORTHO05D008550 6.3e-131 471.5 365 62.7
TWI32G0460 Tripterygium wilfordii HOM05D006688 ORTHO05D008550 1.5e-129 466.8 370 63.2
BcaB03g16729 Brassica carinata HOM05D006688 ORTHO05D008550 2.0e-129 466.5 361 62.9
Ah.09g228060 Amaranthus hybridus HOM05D006688 ORTHO05D008550 3.4e-129 465.7 369 61.5
Migut.L01521 Erythranthe guttata HOM05D006688 ORTHO05D008550 2.2e-128 463.0 358 64.2
Sp3g32810 Schrenkiella parvula HOM05D006688 ORTHO05D008550 2.2e-128 463.0 361 62.0
FAN23G3127 Fragaria x ananassa HOM05D006688 ORTHO05D008550 2.5e-127 459.5 365 65.2
Prupe.7G205900 Prunus persica HOM05D006688 ORTHO05D008550 2.5e-127 459.5 284 73.6
Oeu000312.2 Olea europaea HOM05D006688 ORTHO05D008550 2.1e-126 456.4 401 57.4
MBI04_g12191_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 6.1e-126 454.9 371 61.2
MBI04_g35655_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 7.9e-126 454.5 364 62.4
Peaxi162Scf00494g00088 Petunia axillaris HOM05D006688 ORTHO05D008550 1.8e-125 453.4 358 62.0
FAN26G2887 Fragaria x ananassa HOM05D006688 ORTHO05D008550 6.7e-125 451.4 285 74.0
DCAR_010507 Daucus carota HOM05D006688 ORTHO05D008550 5.7e-124 448.4 363 59.8
THA.LOC104814631 Tarenaya hassleriana HOM05D006688 ORTHO05D008550 6.3e-123 444.9 361 60.9
SalBow1G2294 Salvia bowleyana HOM05D006688 ORTHO05D008550 8.2e-123 444.5 389 58.6
Eucgr.C03417 Eucalyptus grandis HOM05D006688 ORTHO05D008550 1.2e-121 440.7 359 61.3
Nn8g38791 Nelumbo nucifera HOM05D006688 ORTHO05D008550 2.0e-121 439.9 375 59.5
unitig_578.g16412 Utricularia gibba HOM05D006688 ORTHO05D008550 5.0e-120 435.3 358 59.5
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 1.1e-119 434.1 393 57.0
Lsat_1_v5_gn_5_143161 Lactuca sativa HOM05D006688 ORTHO05D008550 4.7e-118 428.7 360 57.2
MD15G1210900 Malus domestica HOM05D006688 ORTHO05D008550 2.1e-110 403.3 381 55.1
CDE04G2495 Ceratophyllum demersum HOM05D006688 ORTHO05D008550 1.0e-109 401.0 346 57.5
AUR62033933 Chenopodium quinoa HOM05D006688 ORTHO05D008550 3.9e-109 399.1 392 53.6
HanXRQChr10g0319491 Helianthus annuus HOM05D006688 ORTHO05D008550 5.7e-108 395.2 376 55.1
ATR0789G107 Amborella trichopoda HOM05D006688 ORTHO05D008550 2.2e-107 393.3 354 55.6
Actinidia38457 Actinidia chinensis HOM05D006688 ORTHO05D008550 1.5e-103 380.6 358 56.4
HPP92_007651 Vanilla planifolia HOM05D006688 ORTHO05D008550 2.1e-102 376.7 284 61.6
Zm00001eb310980 Zea mays HOM05D006688 ORTHO05D008550 4.0e-101 372.5 358 50.0
CANSAT56G4018 Cannabis sativa HOM05D006688 ORTHO05D008550 2.9e-83 313.2 217 67.7
Mapoly0100s0025 Marchantia polymorpha HOM05D006688 ORTHO05D008550 2.8e-78 296.6 369 43.9
Ciclev10009613m.g Citrus clementina HOM05D006688 ORTHO05D008550 4.9e-75 285.8 177 75.1
Os09g0363600 Oryza sativa ssp. japonica HOM05D006688 ORTHO05D008550 4.4e-68 262.7 271 49.1
Lj7A540G53 Lonicera japonica HOM05D006688 ORTHO05D008550 3.8e-51 206.5 167 64.7
Cpa.g.sc28.142 Carica papaya HOM05D006688 ORTHO05D008550 9.3e-50 201.8 158 62.0
Ciclev10009794m.g Citrus clementina HOM05D006688 ORTHO05D008550 2.1e-49 200.7 151 64.2
Cpa.g.sc28.145 Carica papaya HOM05D006688 ORTHO05D008550 3.0e-48 196.8 127 76.4
MCO14G146 Micromonas commoda HOM05D006688 ORTHO05D008550 4.3e-47 193.0 375 33.9
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 9.6e-31 138.7 80 81.2
arahy.Tifrunner.gnm1.ann1.B17F7K Arachis hypogaea HOM05D006688 ORTHO05D008550 2.1e-30 137.5 68 89.7
SEGI_08677 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 6.9e-29 132.5 131 51.9
Solyc07g040780.4 Solanum lycopersicum HOM05D006688 ORTHO05D008550 7.9e-25 119.0 132 46.2
Cre03.g180200 Chlamydomonas reinhardtii HOM05D006688 ORTHO05D008550 2.5e-23 114.0 422 25.8
Thhalv10023917m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 1.7e-19 101.3 123 45.5
Duzib168G0254 Durio zibethinus HOM05D006688 ORTHO05D008550 3.5e-17 93.6 59 78.0
SEGI_12408 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 1.8e-16 91.3 95 43.2
COL.COLO4_27080 Corchorus olitorius HOM05D006688 ORTHO05D008550 1.9e-15 87.8 67 68.7
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 1.1e-07 62.0 237 24.5
FAN10G1082 Fragaria x ananassa HOM05D001335 ORTHO05D001184 1.5e-07 61.6 169 25.4
Glyma.02G198601 Glycine max HOM05D006688 ORTHO05D008550 2.0e-07 61.2 33 81.8
BcaB07g31609 Brassica carinata HOM05D006688 ORTHO05D008550 3.3e-07 60.5 117 36.8
FAN01G1359 Fragaria x ananassa HOM05D001335 ORTHO05D001184 3.3e-07 60.5 151 29.1
FAN03G1395 Fragaria x ananassa HOM05D001335 ORTHO05D001184 3.3e-07 60.5 151 29.1
FAN03G1833 Fragaria x ananassa HOM05D001335 ORTHO05D001184 3.3e-07 60.5 151 29.1
A07p16570 Brassica napus HOM05D002634 ORTHO05D003100 4.3e-07 60.1 152 27.0
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 4.3e-07 60.1 162 26.5
Thhalv10013582m.g Eutrema salsugineum HOM05D001335 ORTHO05D001184 7.4e-07 59.3 146 28.8
FvH4_7g28880 Fragaria vesca HOM05D001335 ORTHO05D001184 7.4e-07 59.3 131 28.2
FAN06G1785 Fragaria x ananassa HOM05D001335 ORTHO05D001184 7.4e-07 59.3 131 28.2
FAN06G4225 Fragaria x ananassa HOM05D001335 ORTHO05D001184 7.4e-07 59.3 131 28.2
Psat6g091800 Pisum sativum HOM05D001335 ORTHO05D001184 7.4e-07 59.3 134 32.1
Thhalv10025269m.g Eutrema salsugineum HOM05D001335 ORTHO05D001184 9.7e-07 58.9 131 32.1
Medtr6g465150 Medicago truncatula HOM05D001335 ORTHO05D001184 9.7e-07 58.9 134 31.3
Sabra15G0148800 Salix brachista HOM05D001335 ORTHO05D001184 9.7e-07 58.9 134 29.1
SHI00252 Sapria himalayana HOM05D003769 ORTHO05D014021 9.7e-07 58.9 85 31.8
Lalb_Chr01g0009081 Lupinus albus HOM05D001335 ORTHO05D001184 1.3e-06 58.5 134 30.6
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 1.7e-06 58.2 76 31.6
CiPaw.04G068700 Carya illinoinensis HOM05D001335 ORTHO05D001184 1.7e-06 58.2 169 27.8
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 1.7e-06 58.2 161 26.7
Glyma.09G148000 Glycine max HOM05D001335 ORTHO05D001184 1.7e-06 58.2 137 32.1
Glyma.16G199300 Glycine max HOM05D001335 ORTHO05D001184 1.7e-06 58.2 137 32.1
Carub.0007s1554 Capsella rubella HOM05D001335 ORTHO05D001184 2.2e-06 57.8 131 29.8
HanXRQChr13g0405591 Helianthus annuus HOM05D001335 ORTHO05D001184 2.2e-06 57.8 145 29.0
Oeu044595.1 Olea europaea HOM05D000453 ORTHO05D000387 2.2e-06 57.8 139 30.9
Potri.015G137200 Populus trichocarpa HOM05D001335 ORTHO05D001184 2.2e-06 57.8 134 29.1
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 2.8e-06 57.4 168 28.0
VMungo0464G0868 Vigna mungo HOM05D001335 ORTHO05D001184 2.8e-06 57.4 134 30.6
DCAR_009404 Daucus carota HOM05D001335 ORTHO05D001184 3.7e-06 57.0 130 27.7
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 3.7e-06 57.0 176 27.3
TPR.G9190 Trifolium pratense HOM05D001335 ORTHO05D001184 3.7e-06 57.0 149 30.9
MSTRG.27142 Avicennia marina HOM05D001335 ORTHO05D001184 4.8e-06 56.6 134 28.4
CSS0045148 Camellia sinensis var. sinensis HOM05D001335 ORTHO05D001184 4.8e-06 56.6 146 27.4
Carub.0008s1207 Capsella rubella HOM05D001335 ORTHO05D001184 4.8e-06 56.6 146 28.1
CBR_g13009 Chara braunii HOM05D006688 ORTHO05D008550 4.8e-06 56.6 51 47.1
Manes.18G038500 Manihot esculenta HOM05D002332 ORTHO05D002509 4.8e-06 56.6 147 24.5
Prupe.2G288900 Prunus persica HOM05D001335 ORTHO05D001184 4.8e-06 56.6 151 29.1
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 6.3e-06 56.2 176 27.3
CARHR232870 Cardamine hirsuta HOM05D001335 ORTHO05D001184 6.3e-06 56.2 131 29.0
QL07p048141 Quercus lobata HOM05D000645 ORTHO05D000494 6.3e-06 56.2 182 27.5
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 6.3e-06 56.2 190 25.3
THA.LOC104811483 Tarenaya hassleriana HOM05D001335 ORTHO05D001184 6.3e-06 56.2 104 32.7
AL8G26310 Arabidopsis lyrata HOM05D001335 ORTHO05D001184 8.2e-06 55.8 104 33.7
BcaB08g35553 Brassica carinata HOM05D001335 ORTHO05D001184 8.2e-06 55.8 241 27.8
CiPaw.03G101500 Carya illinoinensis HOM05D001335 ORTHO05D001184 8.2e-06 55.8 171 27.5
Haze_13775 Corylus avellana HOM05D001335 ORTHO05D001184 8.2e-06 55.8 138 29.7
Lalb_Chr03g0034211 Lupinus albus HOM05D001335 ORTHO05D001184 8.2e-06 55.8 134 29.1
Lalb_Chr19g0131101 Lupinus albus HOM05D001335 ORTHO05D001184 8.2e-06 55.8 134 29.1
MD07G1262400 Malus domestica HOM05D001335 ORTHO05D001184 8.2e-06 55.8 131 27.5
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 8.2e-06 55.8 154 24.7
RcHm_v2.0_Chr1g0376561 Rosa chinensis HOM05D001335 ORTHO05D001184 8.2e-06 55.8 131 27.5


User provided reference genes

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