Gene: FAN19G1103
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN19G1103
- Transcript Identifier FAN19G1103.1
- Gene Type Coding gene
- Location Fvb1-4 : 3418842-3425062 : negative
Gene Family Information
- ID HOM05D006688
- #Genes/#Species 120/94
- Phylogenetic origin
- ID ORTHO05D008550
- #Genes/#Species 118/93
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id maker-Fvb1-4-augustus-gene-34.54.v1.0.a1
- pacid 50556314
Descriptions
- Description PF00271//PF00400//PF04851 - Helicase conserved C-terminal domain (Helicase_C) // WD domain, G-beta repeat (WD40) // Type III restriction enzyme, res subunit (ResIII)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | AT2G19430 |
| GO:0009788 | ISO | PLAZA Integrative Orthology | negative regulation of abscisic acid-activated signaling pathway | AT2G19430 |
| GO:0016567 | ISO | PLAZA Integrative Orthology | protein ubiquitination | AT2G19430 |
| GO:0010267 | ISO | PLAZA Integrative Orthology | production of ta-siRNAs involved in RNA interference | AT2G19430 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G19430 |
| GO:0000347 | ISO | PLAZA Integrative Orthology | THO complex | AT2G19430 |
| GO:0080008 | ISO | PLAZA Integrative Orthology | Cul4-RING E3 ubiquitin ligase complex | AT2G19430 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR001680 | WD40 repeat |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR011545 | DEAD/DEAH box helicase domain |
| Mapman id | Description |
|---|---|
| 16.10.1.1.5 | RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.THO subcomplex.component THOC6 |
| 17.4.2.1 | Protein biosynthesis.translation initiation.mRNA loading.mRNA unwinding factor (eIF4A) |