Gene: Solyc07g040780.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g040780.4
  • Transcript Identifier Solyc07g040780.4.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 49512901-49533012 : negative

Gene Family Information

  • ID HOM05D006688
  • #Genes/#Species 120/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g040780.4.1
  • uniprot A0A3Q7I563
  • gene_id Solyc07g040780

Descriptions

  • Description THO complex subunit 6 (AHRD V3.3 *-* A0A1J3CKF0_NOCCA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA AT2G19430
GO:0009788
ISO
PLAZA Integrative Orthologynegative regulation of abscisic acid-activated signaling pathway AT2G19430
GO:0016567
ISO
PLAZA Integrative Orthologyprotein ubiquitination AT2G19430
GO:0010267
ISO
PLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interference AT2G19430

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G19430

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G19430
GO:0000347
ISO
PLAZA Integrative OrthologyTHO complex AT2G19430
GO:0080008
ISO
PLAZA Integrative OrthologyCul4-RING E3 ubiquitin ligase complex AT2G19430

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042626 THO complex subunit 6
Mapman id Description
16.10.1.1.5 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.THO subcomplex.component THOC6