Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 3.9e-269 931.0 511 100.0
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 1.4e-258 896.0 551 91.5
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 9.7e-188 660.6 508 73.4
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 1.1e-183 647.1 509 73.3
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 3.2e-183 645.6 514 73.7
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 8.8e-181 637.5 510 72.9
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 1.3e-171 607.1 501 71.7
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 1.7e-171 606.7 518 69.3
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 8.3e-163 577.8 522 68.2
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.3e-160 570.5 430 73.7
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 7.5e-156 554.7 517 64.6
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 1.3e-155 553.9 444 70.9
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 2.9e-155 552.7 510 66.7
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 2.4e-154 549.7 515 64.1
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 5.4e-154 548.5 514 63.0
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 1.3e-152 543.9 519 62.4
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 3.0e-152 542.7 521 62.0
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 2.5e-151 539.7 517 63.2
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 3.3e-151 539.3 516 61.4
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 3.6e-150 535.8 516 62.2
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 1.8e-149 533.5 518 61.0
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 1.8e-149 533.5 518 62.2
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 2.3e-149 533.1 501 65.3
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 8.9e-149 531.2 518 61.2
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 2.6e-148 529.6 517 63.2
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 3.7e-147 525.8 510 62.0
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 1.1e-146 524.2 519 63.8
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.2e-145 520.8 440 66.6
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.2e-145 520.8 503 60.6
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 2.1e-145 520.0 498 63.9
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 2.1e-145 520.0 512 62.1
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 2.1e-145 520.0 511 60.1
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.5e-145 519.2 519 60.3
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 6.0e-145 518.5 544 58.8
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 7.8e-145 518.1 521 60.8
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 2.3e-144 516.5 512 62.7
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 2.3e-144 516.5 504 60.9
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 4.3e-143 512.3 443 68.6
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 7.3e-143 511.5 436 67.4
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 2.1e-142 510.0 604 51.2
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 2.1e-142 510.0 503 64.0
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 2.8e-142 509.6 439 67.2
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 4.7e-142 508.8 519 60.3
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 4.7e-142 508.8 526 59.5
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 6.2e-142 508.4 437 68.0
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 8.1e-142 508.1 510 60.8
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 1.8e-141 506.9 472 63.1
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 4.0e-141 505.8 450 66.7
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 6.8e-141 505.0 438 66.7
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 3.4e-140 502.7 507 62.5
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 7.6e-140 501.5 455 62.9
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.3e-139 500.7 510 59.6
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 4.9e-139 498.8 440 65.7
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 6.4e-139 498.4 514 61.1
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 1.1e-138 497.7 517 60.2
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 1.4e-138 497.3 407 68.6
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 3.2e-138 496.1 447 64.4
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 5.4e-138 495.4 438 63.0
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 9.2e-138 494.6 504 58.1
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 2.1e-137 493.4 504 58.1
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 2.1e-137 493.4 438 65.1
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 6.0e-137 491.9 490 60.0
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 7.8e-137 491.5 438 64.4
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 2.3e-136 490.0 504 57.1
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 3.0e-136 489.6 514 61.1
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.5e-135 487.3 519 54.5
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 4.3e-135 485.7 517 60.9
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 4.3e-135 485.7 517 60.7
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 4.3e-135 485.7 380 71.6
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 9.6e-135 484.6 516 58.5
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 1.8e-133 480.3 438 64.2
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 1.8e-133 480.3 488 60.5
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 2.4e-133 479.9 497 60.6
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 2.4e-133 479.9 410 67.3
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 2.6e-132 476.5 436 63.8
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.9e-131 472.2 517 53.6
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 3.9e-128 462.6 508 57.9
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 5.1e-128 462.2 508 56.1
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 8.7e-128 461.5 512 56.4
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 1.6e-126 457.2 513 56.1
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 1.1e-125 454.5 506 50.4
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.1e-125 453.0 503 52.3
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.2e-124 451.1 448 60.5
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 1.2e-124 451.1 503 57.9
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 6.4e-123 445.3 505 54.3
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 2.1e-121 440.3 482 55.6
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 4.6e-121 439.1 480 51.9
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 4.6e-121 439.1 510 52.9
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.4e-117 427.6 511 55.0
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 1.4e-117 427.6 507 52.1
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 3.1e-117 426.4 484 55.8
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 1.2e-116 424.5 507 52.5
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 2.0e-116 423.7 514 54.5
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 2.0e-116 423.7 502 50.6
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 9.9e-116 421.4 507 53.1
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 9.9e-116 421.4 507 52.1
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 1.7e-115 420.6 515 55.3
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 3.8e-115 419.5 472 54.7
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 2.4e-114 416.8 436 58.3
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 3.2e-114 416.4 486 58.6
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.2e-114 416.4 535 47.5
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 5.5e-114 415.6 509 55.0
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 2.1e-113 413.7 420 57.1
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.7e-113 413.3 472 55.7
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 1.3e-112 411.0 504 53.0
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 3.9e-112 409.5 508 53.5
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 8.7e-112 408.3 506 47.6
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 2.5e-111 406.8 508 53.3
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 4.0e-109 399.4 404 59.2
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 1.5e-108 397.5 497 51.1
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 9.7e-103 378.3 412 54.9
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 4.8e-102 375.9 445 54.2
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 2.2e-99 367.1 513 48.7
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 2.3e-96 357.1 486 48.6
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 1.9e-95 354.0 262 65.6
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 2.8e-94 350.1 525 46.7
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 8.5e-91 338.6 353 59.8
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 2.3e-80 303.9 442 45.9
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 1.5e-79 301.2 460 43.9
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.2e-65 255.0 274 55.1
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 9.8e-63 245.4 506 34.4
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 4.2e-58 229.9 186 64.0
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 5.4e-53 213.0 469 35.8
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 1.2e-49 201.8 458 31.4
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 1.8e-48 198.0 276 41.7
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 7.0e-45 186.0 226 45.6
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 1.4e-40 171.8 258 39.9
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 3.9e-27 127.1 597 23.8
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 7.6e-23 112.8 131 45.8
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 5.1e-19 100.1 118 46.6
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 5.6e-18 96.7 82 54.9
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 1.6e-17 95.1 82 54.9
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 9.9e-15 85.9 163 36.2
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 8.4e-14 82.8 163 35.0
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 1.7e-11 75.1 131 35.9
Cpa.g.sc77.59 Carica papaya HOM05D002332 ORTHO05D002509 6.4e-06 56.6 83 36.1


User provided reference genes

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