Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 2.6e-196 688.7 391 100.0
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 4.4e-188 661.4 394 96.7
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 8.4e-107 391.3 403 60.3
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 9.0e-101 371.3 405 56.8
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 1.5e-100 370.5 407 56.3
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 1.7e-99 367.1 403 55.1
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.4e-98 364.0 431 57.8
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 5.1e-96 355.5 405 59.5
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 6.7e-96 355.1 405 53.8
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 7.4e-87 325.1 432 48.4
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 1.2e-84 317.8 401 49.1
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.5e-76 289.7 426 48.8
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 1.3e-75 287.7 429 47.3
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 1.1e-74 284.6 437 45.3
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 3.2e-74 283.1 426 46.5
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 2.0e-71 273.9 416 43.8
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 9.7e-71 271.6 436 43.3
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 8.2e-70 268.5 436 42.9
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 1.1e-69 268.1 418 43.3
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 3.1e-69 266.5 407 43.2
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.6e-68 264.2 413 42.9
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 5.9e-68 262.3 434 41.2
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 2.2e-67 260.4 425 41.4
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 2.9e-67 260.0 429 44.1
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 8.5e-67 258.5 418 42.1
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.5e-66 256.9 405 46.4
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 5.5e-66 255.8 427 44.5
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 3.0e-64 250.0 438 45.0
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 2.0e-63 247.3 491 40.5
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 2.6e-63 246.9 472 41.1
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 3.4e-63 246.5 432 41.7
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 4.4e-63 246.1 431 43.6
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 7.5e-63 245.4 417 43.2
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 9.8e-63 245.0 427 43.1
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 1.7e-62 244.2 448 46.2
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 2.2e-62 243.8 416 46.6
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 2.8e-62 243.4 418 41.9
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 2.8e-62 243.4 405 43.5
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 2.8e-62 243.4 460 43.5
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 1.8e-61 240.7 427 42.6
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 2.4e-61 240.4 414 49.8
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 1.7e-59 234.2 399 42.6
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 1.7e-59 234.2 402 43.0
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.7e-59 234.2 419 41.8
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 5.5e-58 229.2 405 40.0
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 5.5e-58 229.2 450 44.9
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 1.6e-57 227.6 443 45.6
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 8.0e-57 225.3 417 40.3
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 1.0e-56 224.9 286 51.4
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 3.0e-56 223.4 417 40.8
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 4.0e-56 223.0 434 41.5
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 8.8e-56 221.9 462 38.7
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 2.0e-55 220.7 420 38.6
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 3.4e-55 219.9 269 58.7
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 4.4e-55 219.5 430 39.8
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.3e-54 218.0 315 49.2
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 2.8e-54 216.9 485 35.5
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 3.7e-54 216.5 422 40.8
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 1.1e-53 214.9 420 39.5
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 1.8e-53 214.2 466 39.3
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 7.0e-53 212.2 413 38.3
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 2.7e-52 210.3 407 37.8
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 7.7e-52 208.8 539 34.3
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 2.3e-51 207.2 461 43.0
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 2.9e-51 206.8 431 44.1
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 5.0e-51 206.1 435 44.4
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 6.6e-51 205.7 223 51.6
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 9.5e-50 201.8 439 42.4
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.6e-49 199.9 268 50.0
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 6.1e-49 199.1 423 35.9
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 2.3e-48 197.2 435 41.8
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 4.0e-48 196.4 296 43.2
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 5.2e-48 196.1 460 43.7
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.2e-48 196.1 407 37.1
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 9.8e-47 191.8 217 50.7
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 1.3e-46 191.4 484 35.3
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 1.3e-46 191.4 533 36.4
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 1.3e-46 191.4 488 33.8
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 2.9e-46 190.3 351 38.7
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 4.9e-46 189.5 342 46.2
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 5.4e-45 186.0 436 34.6
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 7.0e-45 185.7 459 39.4
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 2.0e-44 184.1 438 34.5
arahy.Tifrunner.gnm1.ann1.IV261E Arachis hypogaea HOM05D000013 ORTHO05D000506 5.9e-44 182.6 104 89.4
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 2.3e-43 180.6 398 35.4
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 1.5e-42 177.9 447 34.7
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 5.6e-42 176.0 410 39.0
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 7.3e-42 175.6 436 36.7
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 5.8e-39 166.0 430 34.2
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 7.5e-39 165.6 419 37.0
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 2.4e-37 160.6 430 36.7
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 3.2e-37 160.2 419 35.1
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.1e-28 131.0 81 71.6
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 2.3e-27 127.5 233 36.9
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 1.6e-25 121.3 437 28.8
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 4.0e-24 116.7 388 35.1
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 6.8e-24 115.9 435 31.0
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 3.8e-22 110.2 93 53.8
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 1.0e-19 102.1 231 39.4
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.0e-16 90.1 62 66.1
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.0e-16 90.1 62 66.1
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 6.9e-16 89.4 219 36.5
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.9e-14 84.0 248 33.5
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.4e-08 65.1 42 61.9
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.0e-07 61.2 43 62.8
Cre06.g254700 Chlamydomonas reinhardtii HOM05D007201 ORTHO05D009122 3.4e-07 60.5 71 36.6
FAN17G2523 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.7e-06 58.2 44 59.1
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 3.8e-06 57.0 70 51.4


User provided reference genes

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