Gene: AT1G75340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G75340
  • Transcript Identifier AT1G75340.1
  • Gene Type Coding gene
  • Location Chr1 : 28269153-28271873 : negative

Gene Family Information

  • ID HOM05D007201
  • #Genes/#Species 109/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G75340.1
  • uniprot Q9FWS3

Descriptions

  • Description Zinc finger C-x8-C-x5-C-x3-H type family protein
  • Computational description Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 7050 Blast hits to 2615 proteins in 330 species: Archae - 4; Bacteria - 260; Metazoa - 1495; Fungi - 1019; Plants - 181; Viruses - 41; Other Eukaryotes - 4050 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1900458
ISO
PLAZA Integrative Orthologynegative regulation of brassinosteroid mediated signaling pathway Os06g0704300
GO:0015031
IEA
GOA Databaseprotein transport
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0016567
IBA
Gene Ontologyprotein ubiquitination1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding Os06g0704300
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0061630
IBA
Gene Ontologyubiquitin protein ligase activity1
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm Os06g0704300
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005635
IEA
GOA Databasenuclear envelope
GO:0005635
IDA
Gene Ontologynuclear envelope2
GO:0005643
IEA
GOA Databasenuclear pore

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045072 MKRN-like
IPR000571 Zinc finger, CCCH-type
IPR036855 Zinc finger, CCCH-type superfamily
IPR041367 E3 ligase, CCCH-type zinc finger
Mapman id Description
23.5.1.1.7.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.nucleoporin (CG1)