Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F2VIBT Arachis hypogaea HOM05D000104 ORTHO05D031502 1.1e-47 193.0 98 100.0
arahy.Tifrunner.gnm1.ann1.QU94QB Arachis hypogaea HOM05D000104 ORTHO05D003467 2.6e-28 128.6 68 91.2
arahy.Tifrunner.gnm1.ann1.YJI1GZ Arachis hypogaea HOM05D000745 ORTHO05D001029 6.5e-24 114.0 61 88.5
Glyma.04G062400 Glycine max HOM05D000104 ORTHO05D003467 4.2e-23 111.3 68 76.5
Phvul.009G088700 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 4.2e-23 111.3 68 76.5
Glyma.06G063400 Glycine max HOM05D000104 ORTHO05D003467 7.2e-23 110.5 68 76.5
Psat5g031880 Pisum sativum HOM05D000104 ORTHO05D003467 1.2e-22 109.8 68 76.5
TPR.G3131 Trifolium pratense HOM05D000104 ORTHO05D003467 1.6e-22 109.4 65 80.0
VMungo1309G2115 Vigna mungo HOM05D000104 ORTHO05D003467 2.1e-22 109.0 68 75.0
Medtr3g106210 Medicago truncatula HOM05D000104 ORTHO05D003467 4.7e-22 107.8 65 78.5
Lalb_Chr23g0268291 Lupinus albus HOM05D000104 ORTHO05D003467 1.8e-21 105.9 68 73.5
Haze_21436 Corylus avellana HOM05D000104 ORTHO05D003467 8.8e-21 103.6 63 73.0
QL02p019684 Quercus lobata HOM05D000104 ORTHO05D003467 8.8e-21 103.6 68 72.1
Dinv16472 Davidia involucrata HOM05D000104 ORTHO05D003467 1.1e-20 103.2 68 69.1
Ca_15766_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 2.6e-20 102.1 68 72.1
Lj1g0020904 Lotus japonicus HOM05D000104 ORTHO05D003467 9.7e-20 100.1 63 71.4
Ca_13055_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 2.2e-19 99.0 65 72.3
Lalb_Chr08g0244361 Lupinus albus HOM05D000104 ORTHO05D003467 3.7e-19 98.2 68 70.6
CSS0032982 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 6.3e-19 97.4 69 66.7
Glyma.17G217300 Glycine max HOM05D000104 ORTHO05D003467 6.3e-19 97.4 67 68.7
TAR625G0155 Trochodendron aralioides HOM05D000104 ORTHO05D003467 1.1e-18 96.7 68 67.6
MD15G1037700 Malus domestica HOM05D000104 ORTHO05D003467 1.8e-18 95.9 70 64.3
GSVIVG01035901001 Vitis vinifera HOM05D000104 ORTHO05D003467 1.8e-18 95.9 60 71.7
Oeu012636.1 Olea europaea HOM05D000104 ORTHO05D003467 2.4e-18 95.5 83 57.8
COL.COLO4_18938 Corchorus olitorius HOM05D000104 ORTHO05D003467 3.1e-18 95.1 69 69.6
Duzib150G0247 Durio zibethinus HOM05D000104 ORTHO05D003467 7.0e-18 94.0 68 64.7
RcHm_v2.0_Chr6g0299661 Rosa chinensis HOM05D000104 ORTHO05D003467 1.2e-17 93.2 68 72.1
MD08G1058800 Malus domestica HOM05D000104 ORTHO05D003467 2.0e-17 92.4 69 62.3
Prupe.1G391600 Prunus persica HOM05D000104 ORTHO05D003467 2.0e-17 92.4 68 67.6
Sabra18G0023400 Salix brachista HOM05D000104 ORTHO05D003467 2.0e-17 92.4 68 66.2
Gohir.A13G179800 Gossypium hirsutum HOM05D000104 ORTHO05D003467 2.6e-17 92.0 62 67.7
Lj7A730T43 Lonicera japonica HOM05D000104 ORTHO05D003467 2.6e-17 92.0 65 64.6
Gohir.D13G187900 Gossypium hirsutum HOM05D000104 ORTHO05D003467 3.5e-17 91.7 62 69.4
Gorai.010G244100 Gossypium raimondii HOM05D000104 ORTHO05D003467 3.5e-17 91.7 62 69.4
Eucgr.G00556 Eucalyptus grandis HOM05D000104 ORTHO05D003467 4.5e-17 91.3 65 63.1
Gohir.D07G035100 Gossypium hirsutum HOM05D000104 ORTHO05D003467 5.9e-17 90.9 68 67.6
Gorai.001G036900 Gossypium raimondii HOM05D000104 ORTHO05D003467 5.9e-17 90.9 68 67.6
Nn2g12306 Nelumbo nucifera HOM05D000104 ORTHO05D003467 5.9e-17 90.9 68 61.8
Sabra06G0204500 Salix brachista HOM05D000104 ORTHO05D003467 5.9e-17 90.9 68 64.7
Gohir.A07G031300 Gossypium hirsutum HOM05D000104 ORTHO05D003467 7.7e-17 90.5 68 67.6
vmacro11233 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 7.7e-17 90.5 85 56.5
Psat6g027200 Pisum sativum HOM05D000104 ORTHO05D003467 1.0e-16 90.1 67 64.2
Potri.018G021100 Populus trichocarpa HOM05D000104 ORTHO05D003467 1.0e-16 90.1 68 64.7
PGR044G1954 Punica granatum HOM05D000104 ORTHO05D003467 1.3e-16 89.7 65 63.1
Sopen06g024260 Solanum pennellii HOM05D000104 ORTHO05D003467 1.3e-16 89.7 68 61.8
FAN15G1888 Fragaria x ananassa HOM05D000104 ORTHO05D003467 1.7e-16 89.4 68 69.1
FAN20G0395 Fragaria x ananassa HOM05D000104 ORTHO05D003467 1.7e-16 89.4 68 69.1
Medtr1g013190 Medicago truncatula HOM05D000104 ORTHO05D003467 1.7e-16 89.4 59 71.2
FAN27G0005 Fragaria x ananassa HOM05D000104 ORTHO05D003467 2.2e-16 89.0 68 69.1
Oeu056768.1 Olea europaea HOM05D000104 ORTHO05D003467 2.2e-16 89.0 87 52.9
Peaxi162Scf00632g00012 Petunia axillaris HOM05D000104 ORTHO05D003467 2.9e-16 88.6 69 62.3
Potri.006G262200 Populus trichocarpa HOM05D000104 ORTHO05D003467 3.8e-16 88.2 68 63.2
Rhsim02G0208200 Rhododendron simsii HOM05D000104 ORTHO05D003467 3.8e-16 88.2 64 65.6
Rhsim07G0163200 Rhododendron simsii HOM05D000104 ORTHO05D003467 3.8e-16 88.2 68 61.8
TPR.G38898 Trifolium pratense HOM05D000104 ORTHO05D003467 3.8e-16 88.2 61 70.5
CAN.G199.65 Capsicum annuum HOM05D000104 ORTHO05D003467 6.5e-16 87.4 68 63.2
CiPaw.08G007100 Carya illinoinensis HOM05D000104 ORTHO05D003467 6.5e-16 87.4 68 66.2
Manes.03G010400 Manihot esculenta HOM05D000104 ORTHO05D003467 6.5e-16 87.4 68 63.2
arahy.Tifrunner.gnm1.ann1.1M11GT Arachis hypogaea HOM05D000104 ORTHO05D031502 8.5e-16 87.0 46 91.3
Manes.16G127700 Manihot esculenta HOM05D000104 ORTHO05D003467 8.5e-16 87.0 68 63.2
RcHm_v2.0_Chr3g0455421 Rosa chinensis HOM05D000104 ORTHO05D003467 8.5e-16 87.0 68 66.2
Sed0013682 Sechium edule HOM05D000104 ORTHO05D003467 1.1e-15 86.7 63 66.7
Solyc06g065730.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 1.1e-15 86.7 68 60.3
Atru.chr7.2525 Acer truncatum HOM05D000104 ORTHO05D003467 1.5e-15 86.3 60 68.3
FvH4_2g40920 Fragaria vesca HOM05D005818 ORTHO05D003467 1.5e-15 86.3 68 67.6
Peaxi162Scf00430g00415 Petunia axillaris HOM05D000104 ORTHO05D003467 1.5e-15 86.3 68 58.8
ClCG05G016460 Citrullus lanatus HOM05D000104 ORTHO05D003467 1.9e-15 85.9 68 63.2
Ciclev10010331m.g Citrus clementina HOM05D000104 ORTHO05D003467 1.9e-15 85.9 66 63.6
Nitab4.5_0002503g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 2.5e-15 85.5 68 58.8
Nitab4.5_0003811g0020 Nicotiana tabacum HOM05D000104 ORTHO05D003467 2.5e-15 85.5 68 58.8
Lalb_Chr22g0361401 Lupinus albus HOM05D000104 ORTHO05D003467 3.2e-15 85.1 61 65.6
Phvul.001G046100 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 3.2e-15 85.1 65 64.6
vmacro05141 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 4.2e-15 84.7 65 63.1
Thecc.09G017400 Theobroma cacao HOM05D000104 ORTHO05D003467 5.5e-15 84.3 68 61.8
MELO3C016973.2 Cucumis melo HOM05D000104 ORTHO05D003467 7.2e-15 84.0 65 63.1
Lalb_Chr24g0402041 Lupinus albus HOM05D000104 ORTHO05D003467 7.2e-15 84.0 69 59.4
TWI63G1656 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 7.2e-15 84.0 68 57.4
Sc09g0010480 Simmondsia chinensis HOM05D000104 ORTHO05D003467 1.2e-14 83.2 60 65.0
CsaV3_4G036700 Cucumis sativus L. HOM05D000104 ORTHO05D003467 1.6e-14 82.8 68 61.8
DCAR_003002 Daucus carota HOM05D000104 ORTHO05D003467 1.6e-14 82.8 65 64.6
Hund03464 Selenicereus undatus HOM05D000104 ORTHO05D003467 1.6e-14 82.8 63 61.9
Migut.A00006 Erythranthe guttata HOM05D000104 ORTHO05D003467 3.6e-14 81.6 65 56.9
TPR.G38867 Trifolium pratense HOM05D000104 ORTHO05D003467 4.7e-14 81.3 64 62.5
Nitab4.5_0000486g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 6.1e-14 80.9 66 60.6
Nitab4.5_0002973g0050 Nicotiana tabacum HOM05D000104 ORTHO05D003467 6.1e-14 80.9 66 60.6
PSO384G0886 Papaver somniferum HOM05D000104 ORTHO05D003467 6.1e-14 80.9 61 60.7
TWI32G0850 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 6.1e-14 80.9 68 57.4
MSTRG.11592 Avicennia marina HOM05D000104 ORTHO05D003467 8.0e-14 80.5 65 53.8
Cpa.g.sc127.15 Carica papaya HOM05D000104 ORTHO05D003467 1.0e-13 80.1 70 60.0
DCAR_007677 Daucus carota HOM05D000104 ORTHO05D003467 2.3e-13 79.0 57 64.9
Cc08_g00060 Coffea canephora HOM05D000104 ORTHO05D003467 3.0e-13 78.6 68 60.3
Sed0022321 Sechium edule HOM05D000104 ORTHO05D003467 4.0e-13 78.2 67 58.2
PSO339G0671 Papaver somniferum HOM05D000104 ORTHO05D003467 6.8e-13 77.4 61 57.4
THA.LOC104803854 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 6.8e-13 77.4 60 60.0
EL10Ac2g04134 Beta vulgaris HOM05D000104 ORTHO05D003467 2.0e-12 75.9 74 56.8
Sopen08g010020 Solanum pennellii HOM05D000104 ORTHO05D003467 3.4e-12 75.1 57 61.4
SGA_v2.0_scaffold20G09081 Striga asiatica HOM05D000104 ORTHO05D003467 3.4e-12 75.1 65 52.3
CAN.G36.11 Capsicum annuum HOM05D000104 ORTHO05D003467 4.4e-12 74.7 57 61.4
AUR62031587 Chenopodium quinoa HOM05D000104 ORTHO05D003467 5.7e-12 74.3 76 56.6
HanXRQChr01g0030671 Helianthus annuus HOM05D000104 ORTHO05D003467 5.7e-12 74.3 69 55.1
Solyc08g029130.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 5.7e-12 74.3 57 61.4
THA.LOC104803635 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 5.7e-12 74.3 60 58.3
Ah.10g035570 Amaranthus hybridus HOM05D000104 ORTHO05D003467 7.5e-12 73.9 75 54.7
Aqoxy2G02630 Aquilegia oxysepala HOM05D000104 ORTHO05D003467 9.8e-12 73.6 61 52.5
Hund19597 Selenicereus undatus HOM05D000104 ORTHO05D003467 9.8e-12 73.6 71 53.5
HanXRQChr01g0030691 Helianthus annuus HOM05D000104 ORTHO05D003467 3.7e-11 71.6 69 53.6
VMungo0647G2573 Vigna mungo HOM05D000104 ORTHO05D003467 3.7e-11 71.6 58 53.4
Aa31sc100G10 Aethionema arabicum HOM05D000104 ORTHO05D003467 8.3e-11 70.5 60 55.0
Ah.16g104930 Amaranthus hybridus HOM05D000104 ORTHO05D003467 2.4e-10 68.9 75 53.3
MSTRG.26031 Avicennia marina HOM05D000104 ORTHO05D031502 3.1e-10 68.6 55 54.5
Thhalv10027006m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 4.1e-10 68.2 48 66.7
CARHR116490 Cardamine hirsuta HOM05D000104 ORTHO05D003467 5.4e-10 67.8 63 54.0
Sp7g29720 Schrenkiella parvula HOM05D000104 ORTHO05D003467 7.0e-10 67.4 48 66.7
Lsat_1_v5_gn_1_42900 Lactuca sativa HOM05D000104 ORTHO05D003467 1.6e-09 66.2 62 53.2
BolC1t00694H Brassica oleracea HOM05D000104 ORTHO05D003467 3.5e-09 65.1 44 68.2
ECA248G2891 Erigeron canadensis HOM05D000104 ORTHO05D003467 5.9e-09 64.3 51 56.9
HanXRQChr11g0353801 Helianthus annuus HOM05D000104 ORTHO05D003467 5.9e-09 64.3 62 51.6
AT2G25170 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 1.0e-08 63.5 63 50.8
BcaC09g51981 Brassica carinata HOM05D000104 ORTHO05D003467 1.0e-08 63.5 44 68.2
BcaC09g51983 Brassica carinata HOM05D000104 ORTHO05D003467 1.0e-08 63.5 44 65.9
A01p06320 Brassica napus HOM05D000104 ORTHO05D003467 1.0e-08 63.5 44 65.9
A01p06340 Brassica napus HOM05D000104 ORTHO05D003467 1.0e-08 63.5 44 68.2
C01p06980 Brassica napus HOM05D000104 ORTHO05D003467 1.0e-08 63.5 44 65.9
C01p07000 Brassica napus HOM05D000104 ORTHO05D003467 1.0e-08 63.5 44 68.2
BolC1t00695H Brassica oleracea HOM05D000104 ORTHO05D003467 1.0e-08 63.5 44 68.2
BraA01t00598Z Brassica rapa HOM05D000104 ORTHO05D003467 1.0e-08 63.5 44 65.9
BraA01t00599Z Brassica rapa HOM05D000104 ORTHO05D003467 1.0e-08 63.5 44 68.2
Carub.0004s0475 Capsella rubella HOM05D000104 ORTHO05D003467 1.0e-08 63.5 63 50.8
Thhalv10000014m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 1.0e-08 63.5 63 50.8
AL4G16380 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 1.7e-08 62.8 63 50.8
BcaB08g35151 Brassica carinata HOM05D000104 ORTHO05D003467 1.7e-08 62.8 51 58.8
BcaC07g40886 Brassica carinata HOM05D000104 ORTHO05D003467 1.7e-08 62.8 51 58.8
A09p55830 Brassica napus HOM05D000104 ORTHO05D003467 1.7e-08 62.8 51 58.8
C08p38830 Brassica napus HOM05D000104 ORTHO05D003467 1.7e-08 62.8 51 58.8
BolC8t51453H Brassica oleracea HOM05D000104 ORTHO05D003467 1.7e-08 62.8 51 58.8
BraA09t40986Z Brassica rapa HOM05D000104 ORTHO05D003467 1.7e-08 62.8 51 58.8
Sp4g04150 Schrenkiella parvula HOM05D000104 ORTHO05D003467 1.7e-08 62.8 51 58.8
SEGI_33990 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 1.7e-08 62.8 59 50.8
CDE06G2391 Ceratophyllum demersum HOM05D000104 ORTHO05D003467 2.2e-08 62.4 62 48.4
HPP92_004609 Vanilla planifolia HOM05D000104 ORTHO05D003467 1.1e-07 60.1 48 56.2
ATR1153G016 Amborella trichopoda HOM05D000104 ORTHO05D003467 2.1e-06 55.8 58 50.0
SEGI_27514 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 2.1e-06 55.8 65 43.1
AL7G20000 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 8.0e-06 53.9 48 56.2


User provided reference genes

Program Settings