Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1991.1 997 100.0
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1904.4 997 96.2
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1729.9 1001 87.0
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1729.9 1001 86.9
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1727.6 1002 86.5
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1725.3 1000 86.7
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1721.1 1003 86.1
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1720.7 999 87.0
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1719.9 999 86.9
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1692.9 1004 85.3
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1669.1 1000 83.8
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1665.6 1003 83.3
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1595.5 1000 81.0
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1592.0 1002 80.0
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1590.9 1003 80.3
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1590.1 1002 80.5
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1585.9 1002 80.3
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1584.7 1001 80.7
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1582.0 1000 80.5
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1578.9 1001 79.8
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1576.2 1001 79.2
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1575.8 1000 80.0
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1568.5 1000 79.2
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1565.4 990 80.3
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1561.2 1000 79.7
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1559.3 1001 79.2
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1558.5 988 79.9
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1558.1 987 80.4
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1557.7 990 80.1
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1556.6 1001 79.2
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1556.2 1000 78.2
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1553.9 1001 77.8
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1552.7 1000 79.1
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1550.4 985 79.9
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1549.6 1008 79.0
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1549.3 985 79.8
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 1000 78.1
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1548.5 991 78.9
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1548.1 985 79.8
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1547.3 990 79.5
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1546.9 1002 78.2
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1546.9 1002 78.2
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 982 79.9
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1545.0 1000 77.9
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1543.5 1001 77.4
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1543.1 990 79.2
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1541.6 1005 78.1
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1538.9 1001 77.9
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1538.1 999 78.2
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1537.7 985 79.3
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1535.0 985 79.2
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1534.2 1001 78.4
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 979 79.1
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1531.2 997 77.7
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1529.6 1007 76.4
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1515.0 1001 76.7
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1505.7 999 75.9
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1501.9 1000 75.7
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1501.5 1001 76.1
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1499.2 999 76.0
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1493.4 1002 75.0
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1490.7 1002 74.8
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1489.9 1002 74.7
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1489.6 1000 75.4
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1488.8 1003 75.0
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1488.4 980 76.4
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1487.2 1002 75.3
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1484.5 1002 74.4
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1482.6 994 75.6
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1478.4 991 75.9
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1476.8 1002 75.7
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1475.7 1002 75.6
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1475.3 998 75.3
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 1002 73.9
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1472.6 1004 75.0
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1468.8 995 75.1
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1468.4 1001 75.3
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1467.2 858 85.3
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1466.1 1004 74.0
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1462.2 1000 74.7
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1461.4 1002 74.9
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1460.7 993 74.6
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1460.3 988 75.0
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1456.8 989 74.4
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1456.4 984 75.6
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1452.2 980 74.2
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1452.2 980 74.2
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1448.3 980 73.9
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1446.4 980 73.8
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1444.9 980 73.7
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1444.9 980 73.7
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1443.7 980 73.7
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1442.2 981 73.7
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1439.1 995 73.2
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1438.3 980 73.4
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1437.9 983 73.6
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1436.4 1009 74.4
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1435.2 983 73.3
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1430.6 981 72.7
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1430.2 982 73.2
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1424.5 983 72.9
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1408.7 984 70.8
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1399.0 987 70.6
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1395.9 981 72.7
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1373.6 854 81.7
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1349.0 751 89.1
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1331.2 998 67.9
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1315.4 1002 66.1
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1283.9 989 68.5
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1270.0 893 72.9
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1191.4 1000 63.6
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1154.8 1001 58.8
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1150.6 1040 56.7
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1149.0 728 78.8
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1097.0 1065 53.7
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 6.8e-312 1074.7 979 57.0
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 3.5e-306 1055.0 688 78.6
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 6.5e-305 1050.8 654 80.9
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 2.5e-272 942.6 718 66.0
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 2.0e-221 773.5 777 51.6
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.5e-205 720.7 485 74.6
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 8.3e-183 645.2 461 69.4
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.5e-123 447.6 325 67.4
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.1e-110 405.6 1113 27.5
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 2.7e-109 401.0 668 38.0
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 9.4e-94 349.4 221 79.6
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.3e-74 285.8 209 72.7
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.8e-61 241.5 201 64.2
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 2.5e-54 218.4 316 42.4
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.2e-51 209.5 125 80.8
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 8.0e-45 186.8 130 70.0
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.5e-40 171.4 97 78.4
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 5.6e-38 164.1 139 61.9
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.8e-28 132.5 64 93.8
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 1.6e-16 92.8 80 65.0


User provided reference genes

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