Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 1.2e-58 229.6 113 100.0
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 8.3e-15 84.0 69 59.4
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 7.0e-14 80.9 46 84.8
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 7.0e-14 80.9 46 84.8
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.7e-13 79.0 46 82.6
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 2.7e-13 79.0 46 82.6
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 5.6e-11 71.2 45 73.3
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 7.3e-11 70.9 46 76.1
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 9.5e-11 70.5 52 71.2
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 2.1e-10 69.3 63 57.1
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 2.8e-10 68.9 46 73.9
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 4.7e-10 68.2 45 71.1
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 6.2e-10 67.8 46 73.9
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.1e-09 67.0 46 71.7
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.8e-09 66.2 63 60.3
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.8e-09 66.2 50 64.0
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.8e-09 66.2 46 67.4
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.8e-09 66.2 49 65.3
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.8e-09 66.2 46 71.7
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.8e-09 66.2 48 70.8
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 3.1e-09 65.5 47 70.2
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.1e-09 65.5 45 68.9
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 3.1e-09 65.5 51 64.7
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.1e-09 65.5 50 64.0
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.1e-09 65.5 45 68.9
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 4.0e-09 65.1 51 64.7
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 4.0e-09 65.1 63 55.6
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 4.0e-09 65.1 45 66.7
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 4.0e-09 65.1 73 53.4
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 5.2e-09 64.7 46 69.6
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 5.2e-09 64.7 45 68.9
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 5.2e-09 64.7 45 66.7
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 6.8e-09 64.3 49 67.3
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 6.8e-09 64.3 43 69.8
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 6.8e-09 64.3 46 73.9
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 6.8e-09 64.3 51 62.7
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 6.8e-09 64.3 51 62.7
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 6.8e-09 64.3 51 62.7
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 8.9e-09 63.9 45 68.9
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 8.9e-09 63.9 45 68.9
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 8.9e-09 63.9 45 64.4
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 8.9e-09 63.9 47 70.2
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.2e-08 63.5 47 68.1
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.2e-08 63.5 45 66.7
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 1.2e-08 63.5 45 64.4
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.2e-08 63.5 45 64.4
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.2e-08 63.5 46 69.6
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.5e-08 63.2 43 72.1
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.5e-08 63.2 43 72.1
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.5e-08 63.2 43 72.1
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.5e-08 63.2 56 60.7
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.5e-08 63.2 43 72.1
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.5e-08 63.2 63 55.6
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.0e-08 62.8 43 72.1
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 2.0e-08 62.8 46 65.2
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 2.0e-08 62.8 46 65.2
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 2.0e-08 62.8 46 71.7
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 2.0e-08 62.8 46 71.7
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 2.0e-08 62.8 45 66.7
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.6e-08 62.4 46 71.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 2.6e-08 62.4 45 66.7
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 2.6e-08 62.4 45 66.7
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.6e-08 62.4 43 69.8
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 2.6e-08 62.4 46 69.6
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.6e-08 62.4 44 68.2
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 2.6e-08 62.4 51 64.7
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 3.4e-08 62.0 56 57.1
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 3.4e-08 62.0 45 62.2
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 3.4e-08 62.0 51 62.7
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 4.4e-08 61.6 45 60.0
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.4e-08 61.6 46 63.0
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 4.4e-08 61.6 45 62.2
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 4.4e-08 61.6 45 64.4
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 5.8e-08 61.2 43 67.4
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 5.8e-08 61.2 45 62.2
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 5.8e-08 61.2 51 62.7
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 5.8e-08 61.2 50 58.0
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 7.5e-08 60.8 46 65.2
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 7.5e-08 60.8 58 56.9
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 9.9e-08 60.5 56 51.8
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.9e-08 60.5 52 63.5
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 9.9e-08 60.5 51 62.7
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.3e-07 60.1 47 66.0
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.3e-07 60.1 50 60.0
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.3e-07 60.1 45 66.7
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.3e-07 60.1 62 53.2
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 1.7e-07 59.7 43 62.8
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 2.9e-07 58.9 43 62.8
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.9e-07 58.9 52 63.5
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 2.9e-07 58.9 45 66.7
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.9e-07 58.9 57 50.9
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 3.7e-07 58.5 43 62.8
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 3.7e-07 58.5 43 62.8
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 3.7e-07 58.5 43 62.8
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 3.7e-07 58.5 43 62.8
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 3.7e-07 58.5 43 62.8
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.7e-07 58.5 43 62.8
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 3.7e-07 58.5 52 61.5
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.7e-07 58.5 52 61.5
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.7e-07 58.5 52 61.5
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 3.7e-07 58.5 43 65.1
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.7e-07 58.5 43 62.8
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.7e-07 58.5 43 62.8
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 4.9e-07 58.2 43 62.8
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 4.9e-07 58.2 43 62.8
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 4.9e-07 58.2 43 62.8
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 4.9e-07 58.2 43 62.8
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 4.9e-07 58.2 43 62.8
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 4.9e-07 58.2 43 62.8
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.9e-07 58.2 52 61.5
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 4.9e-07 58.2 52 61.5
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 6.4e-07 57.8 43 62.8
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 6.4e-07 57.8 45 62.2
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.1e-06 57.0 55 54.5
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.4e-06 56.6 38 71.1
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 1.4e-06 56.6 40 65.0
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 2.4e-06 55.8 43 55.8
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 2.4e-06 55.8 43 60.5
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 5.4e-06 54.7 36 72.2
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 7.1e-06 54.3 43 62.8


User provided reference genes

Program Settings