Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8LUP6T Arachis hypogaea HOM05D003944 ORTHO05D018516 1.4e-37 159.1 78 100.0
arahy.Tifrunner.gnm1.ann1.20HJGU Arachis hypogaea HOM05D003944 ORTHO05D005521 1.0e-27 126.3 66 92.4
arahy.Tifrunner.gnm1.ann1.L41URX Arachis hypogaea HOM05D003944 ORTHO05D005521 1.0e-27 126.3 66 92.4
Gohir.A02G105903 Gossypium hirsutum HOM05D003944 ORTHO05D005521 6.5e-27 123.6 66 89.4
CSS0025536 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 1.1e-26 122.9 66 89.4
Sc13g0001110 Simmondsia chinensis HOM05D003944 ORTHO05D005521 1.1e-26 122.9 66 89.4
THA.LOC104826889 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 1.1e-26 122.9 66 89.4
CSS0010587 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 1.5e-26 122.5 66 87.9
CSS0027330 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 1.5e-26 122.5 66 87.9
Ca_08389_v3 Cicer arietinum L. HOM05D003944 ORTHO05D005521 1.5e-26 122.5 66 89.4
DCAR_020575 Daucus carota HOM05D003944 ORTHO05D005521 1.5e-26 122.5 66 86.4
TPR.G34631 Trifolium pratense HOM05D003944 ORTHO05D005521 1.5e-26 122.5 66 89.4
AL6G13750 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 1.9e-26 122.1 66 84.8
Glyma.19G130000 Glycine max HOM05D003944 ORTHO05D005521 2.5e-26 121.7 66 89.4
Gohir.D03G073100 Gossypium hirsutum HOM05D003944 ORTHO05D005521 2.5e-26 121.7 66 87.9
Gorai.003G086700 Gossypium raimondii HOM05D003944 ORTHO05D005521 2.5e-26 121.7 66 87.9
Nn7g36800 Nelumbo nucifera HOM05D003944 ORTHO05D005521 2.5e-26 121.7 66 87.9
Sp6g38620 Schrenkiella parvula HOM05D003944 ORTHO05D005521 2.5e-26 121.7 66 86.4
VMungo1383G0013 Vigna mungo HOM05D003944 ORTHO05D005521 2.5e-26 121.7 66 87.9
Ah.04g150900 Amaranthus hybridus HOM05D003944 ORTHO05D005521 3.2e-26 121.3 66 87.9
CiPaw.09G048200 Carya illinoinensis HOM05D003944 ORTHO05D005521 3.2e-26 121.3 66 87.9
ClCG04G005580 Citrullus lanatus HOM05D003944 ORTHO05D005521 3.2e-26 121.3 66 87.9
MELO3C019090.2 Cucumis melo HOM05D003944 ORTHO05D005521 3.2e-26 121.3 66 87.9
Duzib128G0786 Durio zibethinus HOM05D003944 ORTHO05D005521 3.2e-26 121.3 66 87.9
Thhalv10012781m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 3.2e-26 121.3 66 84.8
Oeu053358.4 Olea europaea HOM05D003944 ORTHO05D005521 3.2e-26 121.3 66 86.4
Rhsim03G0038900 Rhododendron simsii HOM05D003944 ORTHO05D005521 3.2e-26 121.3 65 89.2
ATR0759G018 Amborella trichopoda HOM05D003944 ORTHO05D005521 4.2e-26 120.9 66 84.8
Aqoxy2G00418 Aquilegia oxysepala HOM05D003944 ORTHO05D005521 4.2e-26 120.9 66 87.9
BcaB05g21771 Brassica carinata HOM05D003944 ORTHO05D005521 4.2e-26 120.9 66 84.8
Eucgr.A02236 Eucalyptus grandis HOM05D003944 ORTHO05D005521 4.2e-26 120.9 66 87.9
Thecc.05G129200 Theobroma cacao HOM05D003944 ORTHO05D005521 4.2e-26 120.9 66 87.9
Cpa.g.sc5.164 Carica papaya HOM05D003944 ORTHO05D018516 5.5e-26 120.6 66 87.9
Lj1g0011822 Lotus japonicus HOM05D003944 ORTHO05D005521 5.5e-26 120.6 66 87.9
Medtr7g089790 Medicago truncatula HOM05D003944 ORTHO05D005521 5.5e-26 120.6 66 87.9
Sed0017237 Sechium edule HOM05D003944 ORTHO05D005521 5.5e-26 120.6 66 87.9
THA.LOC104816412 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 5.5e-26 120.6 66 86.4
Aa31LG3G2850 Aethionema arabicum HOM05D003944 ORTHO05D005521 7.2e-26 120.2 66 86.4
Carub.0006s0308 Capsella rubella HOM05D003944 ORTHO05D005521 7.2e-26 120.2 66 81.8
PGR031G2678 Punica granatum HOM05D003944 ORTHO05D005521 7.2e-26 120.2 66 87.9
QL07p011017 Quercus lobata HOM05D003944 ORTHO05D005521 7.2e-26 120.2 66 87.9
Solyc12g021230.2 Solanum lycopersicum HOM05D003944 ORTHO05D005521 7.2e-26 120.2 66 86.4
Sopen12g011160 Solanum pennellii HOM05D003944 ORTHO05D005521 7.2e-26 120.2 66 86.4
TWI77G0996 Tripterygium wilfordii HOM05D003944 ORTHO05D005521 7.2e-26 120.2 66 86.4
Nitab4.5_0004224g0030 Nicotiana tabacum HOM05D003944 ORTHO05D005521 9.4e-26 119.8 66 86.4
Nitab4.5_0005254g0010 Nicotiana tabacum HOM05D003944 ORTHO05D005521 9.4e-26 119.8 66 86.4
Peaxi162Scf00076g00421 Petunia axillaris HOM05D003944 ORTHO05D005521 9.4e-26 119.8 66 86.4
Prupe.7G033800 Prunus persica HOM05D003944 ORTHO05D005521 9.4e-26 119.8 66 86.4
EL10Ac3g07244 Beta vulgaris HOM05D003944 ORTHO05D005521 1.2e-25 119.4 66 86.4
BraA03t09530Z Brassica rapa HOM05D003944 ORTHO05D005521 1.2e-25 119.4 66 84.8
CAN.G8.29 Capsicum annuum HOM05D003944 ORTHO05D005521 1.2e-25 119.4 66 84.8
Phvul.001G123100 Phaseolus vulgaris HOM05D003944 ORTHO05D005521 1.2e-25 119.4 66 86.4
Aa31LG1G21200 Aethionema arabicum HOM05D003944 ORTHO05D005521 1.6e-25 119.0 66 84.8
CsaV3_4G029550 Cucumis sativus L. HOM05D003944 ORTHO05D005521 1.6e-25 119.0 66 84.8
Manes.09G004300 Manihot esculenta HOM05D003944 ORTHO05D005521 1.6e-25 119.0 66 84.8
AL3G21600 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 2.1e-25 118.6 66 86.4
AT3G10270 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 2.1e-25 118.6 66 86.4
Carub.0003s0945 Capsella rubella HOM05D003944 ORTHO05D005521 2.1e-25 118.6 66 86.4
MD14G1090600 Malus domestica HOM05D003944 ORTHO05D005521 2.1e-25 118.6 66 86.4
MSTRG.19800 Avicennia marina HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 84.8
A03p01540 Brassica napus HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 83.3
A05p38840 Brassica napus HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 84.8
C05p57880 Brassica napus HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 84.8
BolC5t34443H Brassica oleracea HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 84.8
BraA05t22675Z Brassica rapa HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 84.8
MD12G1095800 Malus domestica HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 84.8
SGA_v2.0_scaffold105G30285 Striga asiatica HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 84.8
SGA_v2.0_scaffold3G01719 Striga asiatica HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 84.8
SGA_v2.0_scaffold69G23158 Striga asiatica HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 84.8
TAR636G2487 Trochodendron aralioides HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 87.9
HPP92_028465 Vanilla planifolia HOM05D003944 ORTHO05D005521 2.7e-25 118.2 66 83.3
AT5G04130 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 3.6e-25 117.9 66 81.8
CARHR209140 Cardamine hirsuta HOM05D003944 ORTHO05D005521 3.6e-25 117.9 66 83.3
Glyma.03G127300 Glycine max HOM05D003944 ORTHO05D005521 3.6e-25 117.9 66 86.4
Lalb_Chr14g0365791 Lupinus albus HOM05D003944 ORTHO05D005521 3.6e-25 117.9 66 87.9
SMO356G0312 Selaginella moellendorffii HOM05D003944 ORTHO05D005521 3.6e-25 117.9 66 78.8
BcaB01g05767 Brassica carinata HOM05D003944 ORTHO05D005521 4.7e-25 117.5 66 83.3
COL.COLO4_21471 Corchorus olitorius HOM05D003944 ORTHO05D005521 4.7e-25 117.5 66 86.4
Potri.006G039400 Populus trichocarpa HOM05D003944 ORTHO05D005521 4.7e-25 117.5 66 83.3
Sabra06G0026400 Salix brachista HOM05D001103 ORTHO05D000954 6.1e-25 117.1 66 84.8
Sp3g08540 Schrenkiella parvula HOM05D003944 ORTHO05D005521 6.1e-25 117.1 66 84.8
vmacro07788 Vaccinium macrocarpon HOM05D003944 ORTHO05D005521 6.1e-25 117.1 66 84.8
GSVIVG01033639001 Vitis vinifera HOM05D003944 ORTHO05D005521 6.1e-25 117.1 66 84.8
CANSAT64G1720 Cannabis sativa HOM05D003944 ORTHO05D005521 8.0e-25 116.7 66 83.3
CARHR084750 Cardamine hirsuta HOM05D003944 ORTHO05D005521 8.0e-25 116.7 66 83.3
CDE04G2160 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 8.0e-25 116.7 66 80.3
AUR62018352 Chenopodium quinoa HOM05D003944 ORTHO05D005521 8.0e-25 116.7 66 83.3
Thhalv10020150m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 8.0e-25 116.7 66 83.3
Hund19091 Selenicereus undatus HOM05D003944 ORTHO05D005521 8.0e-25 116.7 66 86.4
SalBow6G5823 Salvia bowleyana HOM05D003944 ORTHO05D005521 1.0e-24 116.3 66 83.3
BcaC03g12954 Brassica carinata HOM05D003944 ORTHO05D005521 1.4e-24 115.9 66 81.8
C02p01820 Brassica napus HOM05D003944 ORTHO05D005521 1.4e-24 115.9 66 81.8
BolC2t06138H Brassica oleracea HOM05D003944 ORTHO05D005521 1.4e-24 115.9 66 81.8
Migut.J01650 Erythranthe guttata HOM05D003944 ORTHO05D005521 1.4e-24 115.9 66 83.3
BraA02t04801Z Brassica rapa HOM05D003944 ORTHO05D005521 1.8e-24 115.5 66 80.3
Cfa020002 Carpinus fangiana HOM05D003944 ORTHO05D005521 1.8e-24 115.5 66 84.8
AUR62030314 Chenopodium quinoa HOM05D003944 ORTHO05D005521 1.8e-24 115.5 66 81.8
PSO339G2693 Papaver somniferum HOM05D003944 ORTHO05D005521 1.8e-24 115.5 66 84.8
PSO384G4619 Papaver somniferum HOM05D003944 ORTHO05D005521 1.8e-24 115.5 66 84.8
Potri.016G036200 Populus trichocarpa HOM05D003944 ORTHO05D005521 1.8e-24 115.5 66 83.3
Psat3g079040 Pisum sativum HOM05D003944 ORTHO05D005521 3.0e-24 114.8 66 84.8
CDE02G1045 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 4.0e-24 114.4 66 80.3
Dinv06172 Davidia involucrata HOM05D003944 ORTHO05D005521 4.0e-24 114.4 66 84.8
Cc06_g19400 Coffea canephora HOM05D003944 ORTHO05D005521 5.2e-24 114.0 66 83.3
Haze_20232 Corylus avellana HOM05D003944 ORTHO05D005521 5.2e-24 114.0 66 83.3
HanXRQChr01g0008211 Helianthus annuus HOM05D003944 ORTHO05D005521 5.2e-24 114.0 66 81.8
SHI24526 Sapria himalayana HOM05D003944 ORTHO05D005521 6.8e-24 113.6 66 80.3
Lsat_1_v5_gn_5_157080 Lactuca sativa HOM05D003944 ORTHO05D005521 1.5e-23 112.5 66 80.3
Lj1C1090G8 Lonicera japonica HOM05D003944 ORTHO05D005521 1.5e-23 112.5 66 80.3
SEGI_14179 Sequoiadendron giganteum HOM05D003944 ORTHO05D018516 2.6e-23 111.7 66 77.3
Mapoly0001s0398 Marchantia polymorpha HOM05D003944 ORTHO05D005521 3.4e-23 111.3 66 74.2
Zm00001eb128720 Zea mays HOM05D003944 ORTHO05D005521 3.4e-23 111.3 66 81.8
ECA248G1744 Erigeron canadensis HOM05D003944 ORTHO05D005521 4.4e-23 110.9 66 77.3
Pp3c22_3710 Physcomitrium patens HOM05D003944 ORTHO05D005521 5.7e-23 110.5 66 75.8
Pp3c19_5200 Physcomitrium patens HOM05D003944 ORTHO05D005521 7.5e-23 110.2 66 74.2
Actinidia01829 Actinidia chinensis HOM05D003944 ORTHO05D005521 9.8e-23 109.8 66 78.8
Ciclev10004438m.g Citrus clementina HOM05D003944 ORTHO05D005521 1.3e-22 109.4 66 77.3
FvH4_6g25390 Fragaria vesca HOM05D003944 ORTHO05D005521 2.8e-22 108.2 66 77.3
FAN02G4022 Fragaria x ananassa HOM05D003944 ORTHO05D005521 2.8e-22 108.2 66 77.3
AagrBONN_evm.TU.Sc2ySwM_228.2859 Anthoceros agrestis HOM05D003944 ORTHO05D005521 3.7e-22 107.8 66 74.2
Os01g0268300 Oryza sativa ssp. japonica HOM05D003944 ORTHO05D005521 3.7e-22 107.8 66 75.8
FAN05G2619 Fragaria x ananassa HOM05D003944 ORTHO05D005521 8.3e-22 106.7 66 75.8
HanXRQChr12g0369811 Helianthus annuus HOM05D003944 ORTHO05D018516 8.3e-22 106.7 66 77.3
RcHm_v2.0_Chr2g0125831 Rosa chinensis HOM05D003944 ORTHO05D005521 8.3e-22 106.7 66 75.8
CBR_g48715 Chara braunii HOM05D003944 ORTHO05D005521 1.4e-21 105.9 73 69.9
unitig_899.g15645 Utricularia gibba HOM05D003944 ORTHO05D005521 1.4e-21 105.9 66 75.8
Atru.chr1.1433 Acer truncatum HOM05D003944 ORTHO05D005521 2.4e-21 105.1 66 77.3
HanXRQChr14g0432561 Helianthus annuus HOM05D003944 ORTHO05D018516 3.3e-18 94.7 53 86.8
MCO09G035 Micromonas commoda HOM05D003944 ORTHO05D005521 1.6e-17 92.4 66 60.6
Cre10.g440750 Chlamydomonas reinhardtii HOM05D003944 ORTHO05D005521 1.4e-16 89.4 67 64.2
FAN09G4102 Fragaria x ananassa HOM05D003944 ORTHO05D005521 1.3e-14 82.8 49 77.6
PRCOL_00004441 Prasinoderma coloniale HOM05D003944 ORTHO05D005521 2.2e-14 82.0 53 69.8
COL.COLO4_37451 Corchorus olitorius HOM05D003944 ORTHO05D005521 7.3e-10 67.0 39 84.6
Gohir.A13G076800 Gossypium hirsutum HOM05D003944 ORTHO05D018516 1.2e-09 66.2 39 84.6
Sabra16G0038300 Salix brachista HOM05D003944 ORTHO05D005521 3.6e-09 64.7 39 82.1
Sabra16G0038600 Salix brachista HOM05D003944 ORTHO05D005521 3.6e-09 64.7 39 82.1
Haze_07892 Corylus avellana HOM05D003944 ORTHO05D164236 6.8e-08 60.5 50 64.0
Gohir.A11G322000 Gossypium hirsutum HOM05D003944 ORTHO05D018516 6.8e-08 60.5 39 82.1
arahy.Tifrunner.gnm1.ann1.7H6MCI Arachis hypogaea HOM05D001259 ORTHO05D001103 1.7e-06 55.8 26 92.3
arahy.Tifrunner.gnm1.ann1.HHLG0V Arachis hypogaea HOM05D001259 ORTHO05D001103 1.7e-06 55.8 26 92.3


User provided reference genes

Program Settings