Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.46M2KL Arachis hypogaea HOM05D002199 ORTHO05D004947 1.4e-36 156.4 77 100.0
Rhsim01G0284100 Rhododendron simsii HOM05D002199 ORTHO05D004947 7.1e-33 144.1 77 92.2
arahy.Tifrunner.gnm1.ann1.BKDY12 Arachis hypogaea HOM05D002199 ORTHO05D004947 1.7e-31 139.4 110 70.0
CSS0029265 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 4.3e-30 134.8 110 67.3
Gohir.A08G042600 Gossypium hirsutum HOM05D002199 ORTHO05D004947 4.3e-30 134.8 109 65.1
Thecc.01G298300 Theobroma cacao HOM05D002199 ORTHO05D004947 4.3e-30 134.8 109 65.1
Glyma.19G210402 Glycine max HOM05D002199 ORTHO05D004947 2.8e-29 132.1 110 67.3
Sed0021569 Sechium edule HOM05D002199 ORTHO05D004947 2.8e-29 132.1 110 66.4
Lalb_Chr21g0306811 Lupinus albus HOM05D002199 ORTHO05D004947 3.6e-29 131.7 111 64.9
Eucgr.K03467 Eucalyptus grandis HOM05D002199 ORTHO05D004947 4.7e-29 131.3 110 63.6
Sabra14G0097300 Salix brachista HOM05D002199 ORTHO05D007829 6.2e-29 131.0 110 65.5
Sed0020542 Sechium edule HOM05D002199 ORTHO05D004947 6.2e-29 131.0 110 66.4
Glyma.03G213600 Glycine max HOM05D002199 ORTHO05D004947 8.1e-29 130.6 110 66.4
Gohir.A12G131300 Gossypium hirsutum HOM05D002199 ORTHO05D004947 1.1e-28 130.2 109 63.3
Gohir.D12G135200 Gossypium hirsutum HOM05D002199 ORTHO05D004947 1.1e-28 130.2 109 63.3
Gorai.008G146200 Gossypium raimondii HOM05D002199 ORTHO05D004947 1.1e-28 130.2 109 63.3
Prupe.8G259300 Prunus persica HOM05D002199 ORTHO05D004947 1.1e-28 130.2 110 64.5
Duzib211G0610 Durio zibethinus HOM05D002199 ORTHO05D004947 1.4e-28 129.8 109 66.1
Gohir.D08G052400 Gossypium hirsutum HOM05D002199 ORTHO05D004947 1.4e-28 129.8 109 66.1
Gorai.004G052500 Gossypium raimondii HOM05D002199 ORTHO05D004947 1.4e-28 129.8 109 66.1
Potri.002G205700 Populus trichocarpa HOM05D002199 ORTHO05D004947 1.4e-28 129.8 110 66.4
Potri.014G130700 Populus trichocarpa HOM05D002199 ORTHO05D004947 1.4e-28 129.8 110 66.4
PGR044G2002 Punica granatum HOM05D002199 ORTHO05D004947 1.8e-28 129.4 111 66.7
Atru.chr5.2688 Acer truncatum HOM05D002199 ORTHO05D004947 2.4e-28 129.0 110 63.6
Glyma.10G019100 Glycine max HOM05D002199 ORTHO05D004947 2.4e-28 129.0 109 66.1
Lalb_Chr02g0143231 Lupinus albus HOM05D002199 ORTHO05D004947 2.4e-28 129.0 111 63.1
Manes.09G170401 Manihot esculenta HOM05D002199 ORTHO05D004947 2.4e-28 129.0 109 67.0
ClCG09G010120 Citrullus lanatus HOM05D002199 ORTHO05D004947 3.1e-28 128.6 109 62.4
COL.COLO4_23366 Corchorus olitorius HOM05D002199 ORTHO05D004947 3.1e-28 128.6 107 66.4
Dinv40337 Davidia involucrata HOM05D002199 ORTHO05D004947 3.1e-28 128.6 109 65.1
Duzib133G1030 Durio zibethinus HOM05D002199 ORTHO05D004947 3.1e-28 128.6 109 65.1
MD03G1286000 Malus domestica HOM05D002199 ORTHO05D004947 3.1e-28 128.6 109 66.1
MD11G1305900 Malus domestica HOM05D002199 ORTHO05D004947 3.1e-28 128.6 109 66.1
MELO3C018097.2 Cucumis melo HOM05D002199 ORTHO05D004947 4.0e-28 128.3 110 65.5
CsaV3_4G030890 Cucumis sativus L. HOM05D002199 ORTHO05D004947 4.0e-28 128.3 110 65.5
QL12p026659 Quercus lobata HOM05D002199 ORTHO05D004947 4.0e-28 128.3 109 65.1
QL12p027276 Quercus lobata HOM05D002199 ORTHO05D004947 4.0e-28 128.3 109 65.1
GSVIVG01027986001 Vitis vinifera HOM05D002199 ORTHO05D004947 4.0e-28 128.3 110 65.5
Glyma.02G155300 Glycine max HOM05D002199 ORTHO05D004947 5.2e-28 127.9 109 65.1
PSO170G1601 Papaver somniferum HOM05D002199 ORTHO05D004947 6.9e-28 127.5 111 66.7
PSO210G6647 Papaver somniferum HOM05D002199 ORTHO05D004947 6.9e-28 127.5 111 66.7
CANSAT25G1293 Cannabis sativa HOM05D002199 ORTHO05D004947 8.9e-28 127.1 109 65.1
CANSAT25G3340 Cannabis sativa HOM05D002199 ORTHO05D004947 8.9e-28 127.1 109 65.1
Lj1g0003572 Lotus japonicus HOM05D002199 ORTHO05D004947 8.9e-28 127.1 111 63.1
VMungo0720G1966 Vigna mungo HOM05D002199 ORTHO05D004947 8.9e-28 127.1 110 65.5
Ciclev10022685m.g Citrus clementina HOM05D002199 ORTHO05D004947 1.2e-27 126.7 109 65.1
Hma1.2p1_1292F.1_g273770 Hydrangea macrophylla HOM05D002199 ORTHO05D004947 1.2e-27 126.7 108 65.7
Ca_09150_v3 Cicer arietinum L. HOM05D002199 ORTHO05D004947 1.5e-27 126.3 109 65.1
GSVIVG01031139001 Vitis vinifera HOM05D002199 ORTHO05D004947 1.5e-27 126.3 110 64.5
TPR.G34004 Trifolium pratense HOM05D002199 ORTHO05D004947 2.0e-27 125.9 109 65.1
Phvul.007G144000 Phaseolus vulgaris HOM05D002199 ORTHO05D004947 3.4e-27 125.2 109 65.1
CsaV3_7G024630 Cucumis sativus L. HOM05D002199 ORTHO05D004947 4.4e-27 124.8 110 65.5
Hund05416 Selenicereus undatus HOM05D002199 ORTHO05D004947 4.4e-27 124.8 110 64.5
Atru.chr5.1170 Acer truncatum HOM05D002199 ORTHO05D004947 5.8e-27 124.4 109 64.2
MSTRG.21624 Avicennia marina HOM05D002199 ORTHO05D004947 5.8e-27 124.4 109 61.5
Ciclev10002769m.g Citrus clementina HOM05D002199 ORTHO05D004947 5.8e-27 124.4 109 65.1
Dinv19707 Davidia involucrata HOM05D002199 ORTHO05D004947 5.8e-27 124.4 109 65.1
Phvul.001G206200 Phaseolus vulgaris HOM05D002199 ORTHO05D004947 7.6e-27 124.0 109 63.3
TAR362G0065 Trochodendron aralioides HOM05D002199 ORTHO05D004947 7.6e-27 124.0 110 63.6
Sopen09g027730 Solanum pennellii HOM05D002199 ORTHO05D004947 9.9e-27 123.6 112 60.7
Aqoxy5G00738 Aquilegia oxysepala HOM05D002199 ORTHO05D004947 1.3e-26 123.2 111 64.9
MSTRG.16392 Avicennia marina HOM05D002199 ORTHO05D004947 1.3e-26 123.2 110 63.6
CiPaw.08G096800 Carya illinoinensis HOM05D002199 ORTHO05D004947 1.3e-26 123.2 109 60.6
Ca_10348_v3 Cicer arietinum L. HOM05D002199 ORTHO05D004947 1.7e-26 122.9 109 63.3
Nn3g21455 Nelumbo nucifera HOM05D002199 ORTHO05D004947 1.7e-26 122.9 109 63.3
Nn4g25821 Nelumbo nucifera HOM05D002199 ORTHO05D004947 1.7e-26 122.9 107 64.5
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 2.2e-26 122.5 106 65.1
CSS0020039 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 2.9e-26 122.1 111 64.9
CiPaw.07G107000 Carya illinoinensis HOM05D002199 ORTHO05D004947 2.9e-26 122.1 109 63.3
TWI14G0261 Tripterygium wilfordii HOM05D002199 ORTHO05D004947 2.9e-26 122.1 109 63.3
Manes.05G063400 Manihot esculenta HOM05D002199 ORTHO05D004947 3.8e-26 121.7 110 63.6
HanXRQChr09g0248151 Helianthus annuus HOM05D002199 ORTHO05D004947 4.9e-26 121.3 108 60.2
Cc02_g34160 Coffea canephora HOM05D002199 ORTHO05D004947 6.4e-26 120.9 109 63.3
FvH4_2g25520 Fragaria vesca HOM05D002199 ORTHO05D004947 8.4e-26 120.6 110 62.7
FAN24G1953 Fragaria x ananassa HOM05D002199 ORTHO05D004947 8.4e-26 120.6 110 62.7
Nitab4.5_0003917g0030 Nicotiana tabacum HOM05D002199 ORTHO05D004947 8.4e-26 120.6 109 61.5
RcHm_v2.0_Chr6g0293731 Rosa chinensis HOM05D002199 ORTHO05D004947 8.4e-26 120.6 110 62.7
Sopen01g043260 Solanum pennellii HOM05D002199 ORTHO05D004947 8.4e-26 120.6 111 62.2
ATR0796G324 Amborella trichopoda HOM05D002199 ORTHO05D004947 1.1e-25 120.2 111 64.0
CSS0007987 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 1.1e-25 120.2 110 63.6
Haze_04909 Corylus avellana HOM05D002199 ORTHO05D007829 1.1e-25 120.2 108 62.0
SHI15194 Sapria himalayana HOM05D002199 ORTHO05D004947 1.1e-25 120.2 108 62.0
Manes.01G217600 Manihot esculenta HOM05D002199 ORTHO05D004947 1.4e-25 119.8 110 62.7
Peaxi162Scf00037g01217 Petunia axillaris HOM05D002199 ORTHO05D004947 1.4e-25 119.8 110 62.7
Aqoxy2G02974 Aquilegia oxysepala HOM05D002199 ORTHO05D004947 1.9e-25 119.4 111 64.0
Solyc01g099740.4 Solanum lycopersicum HOM05D002199 ORTHO05D004947 1.9e-25 119.4 99 65.7
unitig_0.g657 Utricularia gibba HOM05D002199 ORTHO05D004947 1.9e-25 119.4 104 64.4
FAN20G0797 Fragaria x ananassa HOM05D002199 ORTHO05D007829 2.4e-25 119.0 109 62.4
TWI59G0539 Tripterygium wilfordii HOM05D002199 ORTHO05D004947 2.4e-25 119.0 109 64.2
AUR62008655 Chenopodium quinoa HOM05D002199 ORTHO05D004947 3.2e-25 118.6 107 65.4
AUR62033113 Chenopodium quinoa HOM05D002199 ORTHO05D004947 3.2e-25 118.6 107 65.4
QL03p020177 Quercus lobata HOM05D002199 ORTHO05D004947 3.2e-25 118.6 109 61.5
Migut.D00203 Erythranthe guttata HOM05D002199 ORTHO05D004947 4.2e-25 118.2 104 64.4
AL6G39230 Arabidopsis lyrata HOM05D002199 ORTHO05D004947 5.4e-25 117.9 105 64.8
MBI18_g08110_MAGBIO Magnolia biondii HOM05D002199 ORTHO05D004947 5.4e-25 117.9 111 63.1
HanXRQChr03g0074701 Helianthus annuus HOM05D002199 ORTHO05D004947 7.1e-25 117.5 109 59.6
Psat3g021920 Pisum sativum HOM05D002199 ORTHO05D004947 7.1e-25 117.5 96 64.6
TPR.G9614 Trifolium pratense HOM05D002199 ORTHO05D004947 7.1e-25 117.5 96 64.6
TAR455G0001 Trochodendron aralioides HOM05D002199 ORTHO05D004947 7.1e-25 117.5 110 61.8
Nitab4.5_0003181g0010 Nicotiana tabacum HOM05D002199 ORTHO05D004947 9.3e-25 117.1 108 60.2
AT5G27720 Arabidopsis thaliana HOM05D002199 ORTHO05D004947 1.2e-24 116.7 105 63.8
CARHR186240 Cardamine hirsuta HOM05D002199 ORTHO05D004947 1.2e-24 116.7 105 61.0
Cpa.g.sc9.221 Carica papaya HOM05D002199 ORTHO05D004947 1.2e-24 116.7 62 91.9
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.2e-24 116.7 104 62.5
THA.LOC104821724 Tarenaya hassleriana HOM05D002199 ORTHO05D004947 1.2e-24 116.7 107 62.6
Carub.0006s2485 Capsella rubella HOM05D002199 ORTHO05D004947 2.1e-24 115.9 104 64.4
Zm00001eb127790 Zea mays HOM05D002199 ORTHO05D004947 2.1e-24 115.9 99 63.6
Zm00001eb333500 Zea mays HOM05D002199 ORTHO05D004947 2.1e-24 115.9 99 63.6
CAN.G1459.13 Capsicum annuum HOM05D002199 ORTHO05D004947 2.7e-24 115.5 109 61.5
Lj5g0015534 Lotus japonicus HOM05D002199 ORTHO05D004947 2.7e-24 115.5 107 60.7
Os01g0256900 Oryza sativa ssp. japonica HOM05D002199 ORTHO05D004947 4.6e-24 114.8 99 62.6
Sabra02G0153600 Salix brachista HOM05D002199 ORTHO05D004947 4.6e-24 114.8 62 90.3
Lalb_Chr06g0163431 Lupinus albus HOM05D002199 ORTHO05D004947 6.0e-24 114.4 63 90.5
Medtr7g108700 Medicago truncatula HOM05D002199 ORTHO05D004947 6.0e-24 114.4 111 64.0
Medtr8g058420 Medicago truncatula HOM05D002199 ORTHO05D004947 6.0e-24 114.4 111 64.0
Medtr8g058537 Medicago truncatula HOM05D002199 ORTHO05D004947 6.0e-24 114.4 111 64.0
Medtr8g091620 Medicago truncatula HOM05D002199 ORTHO05D004947 6.0e-24 114.4 111 64.0
Actinidia24830 Actinidia chinensis HOM05D002199 ORTHO05D004947 7.8e-24 114.0 62 90.3
HPP92_006923 Vanilla planifolia HOM05D002199 ORTHO05D004947 7.8e-24 114.0 108 63.0
Thhalv10021732m.g Eutrema salsugineum HOM05D002199 ORTHO05D004947 1.0e-23 113.6 108 60.2
MBI19_g09229_MAGBIO Magnolia biondii HOM05D002199 ORTHO05D004947 1.3e-23 113.2 110 61.8
Sp3g04360 Schrenkiella parvula HOM05D002199 ORTHO05D004947 1.3e-23 113.2 98 63.3
Actinidia32227 Actinidia chinensis HOM05D002199 ORTHO05D004947 1.7e-23 112.8 62 90.3
Nitab4.5_0003844g0070 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.7e-23 112.8 109 61.5
C07p41100 Brassica napus HOM05D002199 ORTHO05D004947 2.3e-23 112.5 104 61.5
BolC7t44637H Brassica oleracea HOM05D002199 ORTHO05D004947 2.3e-23 112.5 104 61.5
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 2.3e-23 112.5 97 62.9
CDE11G1052 Ceratophyllum demersum HOM05D005808 ORTHO05D006196 2.3e-23 112.5 97 62.9
A09p05420 Brassica napus HOM05D002199 ORTHO05D004947 3.9e-23 111.7 105 61.9
Sc05g0004040 Simmondsia chinensis HOM05D002199 ORTHO05D004947 5.1e-23 111.3 59 93.2
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 6.6e-23 110.9 109 61.5
C09p05900 Brassica napus HOM05D002199 ORTHO05D004947 1.5e-22 109.8 104 61.5
BolC9t53516H Brassica oleracea HOM05D002199 ORTHO05D004947 1.5e-22 109.8 104 61.5
BraA09t36180Z Brassica rapa HOM05D002199 ORTHO05D004947 1.5e-22 109.8 104 61.5
BcaB04g19685 Brassica carinata HOM05D002199 ORTHO05D004947 1.9e-22 109.4 96 62.5
BcaC04g23643 Brassica carinata HOM05D002199 ORTHO05D004947 1.9e-22 109.4 96 62.5
Sp2g20890 Schrenkiella parvula HOM05D002199 ORTHO05D004947 1.9e-22 109.4 96 62.5
THA.LOC104818719 Tarenaya hassleriana HOM05D002199 ORTHO05D004947 1.9e-22 109.4 96 62.5
Oeu054128.1 Olea europaea HOM05D002199 ORTHO05D004947 2.5e-22 109.0 58 93.1
Psat6g165920 Pisum sativum HOM05D002199 ORTHO05D004947 2.5e-22 109.0 61 91.8
ECA248G3217 Erigeron canadensis HOM05D002199 ORTHO05D004947 3.3e-22 108.6 110 60.9
FAN15G0019 Fragaria x ananassa HOM05D002199 ORTHO05D007829 3.3e-22 108.6 125 54.4
FAN27G3300 Fragaria x ananassa HOM05D002199 ORTHO05D007829 3.3e-22 108.6 125 54.4
vmacro14997 Vaccinium macrocarpon HOM05D002199 ORTHO05D004947 4.3e-22 108.2 62 87.1
A06p37360 Brassica napus HOM05D002199 ORTHO05D004947 5.6e-22 107.8 103 61.2
BraA06t26659Z Brassica rapa HOM05D002199 ORTHO05D004947 5.6e-22 107.8 103 61.2
AagrBONN_evm.TU.Sc2ySwM_228.5267 Anthoceros agrestis HOM05D002199 ORTHO05D004947 1.3e-21 106.7 98 60.2
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.3e-21 106.7 98 62.2
Lsat_1_v5_gn_5_190620 Lactuca sativa HOM05D002199 ORTHO05D004947 1.3e-21 106.7 96 59.4
Pp3c14_11180 Physcomitrium patens HOM05D002199 ORTHO05D004947 1.6e-21 106.3 97 59.8
EL10Ac7g17474 Beta vulgaris HOM05D002199 ORTHO05D004947 4.8e-21 104.8 59 91.5
Actinidia21055 Actinidia chinensis HOM05D000147 ORTHO05D001254 6.2e-21 104.4 90 61.1
Aa31LG5G15860 Aethionema arabicum HOM05D002199 ORTHO05D004947 8.1e-21 104.0 99 60.6
Haze_04137 Corylus avellana HOM05D001134 ORTHO05D001035 3.1e-20 102.1 140 47.9
Mapoly0002s0139 Marchantia polymorpha HOM05D002199 ORTHO05D004947 2.0e-19 99.4 116 54.3
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 2.6e-19 99.0 62 83.9
Oeu048345.1 Olea europaea HOM05D002199 ORTHO05D004947 4.5e-19 98.2 56 91.1
CBR_g29529 Chara braunii HOM05D002199 ORTHO05D004947 2.9e-18 95.5 91 54.9
Sabra16G0270300 Salix brachista HOM05D001640 ORTHO05D004947 2.9e-18 95.5 42 97.6
PGSC0003DMG400024713 Solanum tuberosum HOM05D001134 ORTHO05D001035 2.7e-16 89.0 84 59.5
Solyc09g065940.4 Solanum lycopersicum HOM05D002199 ORTHO05D004947 6.0e-16 87.8 44 97.7
MELO3C024092.2 Cucumis melo HOM05D002199 ORTHO05D004947 2.3e-15 85.9 129 45.7
MCO07G033 Micromonas commoda HOM05D002199 ORTHO05D004947 5.1e-15 84.7 98 48.0
Cre06.g251300 Chlamydomonas reinhardtii HOM05D002199 ORTHO05D004947 2.8e-13 79.0 98 44.9
CARHR196040 Cardamine hirsuta HOM05D002199 ORTHO05D004947 6.2e-13 77.8 49 73.5
PRCOL_00007270 Prasinoderma coloniale HOM05D002199 ORTHO05D004947 6.2e-13 77.8 84 46.4
SMO356G0382 Selaginella moellendorffii HOM05D002199 ORTHO05D004947 1.4e-12 76.6 79 51.9
Migut.D00124 Erythranthe guttata HOM05D002199 ORTHO05D004947 1.7e-10 69.7 75 49.3
Medtr1g088710 Medicago truncatula HOM05D002199 ORTHO05D004947 1.4e-09 66.6 108 38.9
Oeu054129.1 Olea europaea HOM05D002199 ORTHO05D004947 1.9e-09 66.2 27 100.0
Sopen00g013590 Solanum pennellii HOM05D002199 ORTHO05D004947 1.9e-09 66.2 27 100.0
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 5.5e-09 64.7 27 96.3
C05p43680 Brassica napus HOM05D002199 ORTHO05D004947 9.3e-09 63.9 28 92.9
PGSC0003DMG400007541 Solanum tuberosum HOM05D002199 ORTHO05D004947 2.1e-08 62.8 28 92.9
RcHm_v2.0_Chr3g0494651 Rosa chinensis HOM05D002199 ORTHO05D004947 3.9e-07 58.5 31 77.4


User provided reference genes

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