Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.183PB6 Arachis hypogaea HOM05D003289 ORTHO05D004594 4.5e-239 830.9 419 100.0
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 1.1e-46 191.8 322 41.6
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 4.1e-43 179.9 317 39.4
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 4.1e-43 179.9 343 38.2
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 9.2e-43 178.7 317 39.4
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 1.3e-41 174.9 333 37.8
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 1.7e-41 174.5 326 39.0
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 3.0e-41 173.7 326 39.0
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 5.0e-41 172.9 326 38.7
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 5.0e-41 172.9 315 39.7
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 5.0e-41 172.9 194 52.1
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 6.6e-41 172.6 301 39.5
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 6.6e-41 172.6 301 39.5
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 6.6e-41 172.6 326 38.7
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 6.6e-41 172.6 300 40.3
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 8.6e-41 172.2 324 38.9
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 1.1e-40 171.8 333 37.8
Hma1.2p1_0305F.1_g119455 Hydrangea macrophylla HOM05D003289 ORTHO05D004594 1.1e-40 171.8 296 40.9
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 1.5e-40 171.4 377 36.6
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 1.5e-40 171.4 284 40.8
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 1.5e-40 171.4 284 41.2
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 1.9e-40 171.0 340 37.4
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 1.9e-40 171.0 331 37.5
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 1.9e-40 171.0 336 38.1
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 2.5e-40 170.6 327 37.6
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 2.5e-40 170.6 310 39.7
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 3.3e-40 170.2 326 39.6
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 3.3e-40 170.2 332 38.0
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 4.3e-40 169.9 301 38.9
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 4.3e-40 169.9 332 37.7
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 5.6e-40 169.5 284 40.5
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 7.3e-40 169.1 301 38.9
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 7.3e-40 169.1 317 38.2
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 9.5e-40 168.7 332 37.3
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 9.5e-40 168.7 317 37.5
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 1.2e-39 168.3 284 40.1
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 1.6e-39 167.9 332 37.3
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 1.6e-39 167.9 336 37.2
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 2.1e-39 167.5 332 37.3
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 3.6e-39 166.8 212 48.1
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 3.6e-39 166.8 289 40.1
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 4.7e-39 166.4 332 37.3
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 4.7e-39 166.4 300 39.0
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 4.7e-39 166.4 339 35.7
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 4.7e-39 166.4 316 37.3
Psat7g189880 Pisum sativum HOM05D003289 ORTHO05D004594 4.7e-39 166.4 316 37.3
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 4.7e-39 166.4 317 36.6
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 6.2e-39 166.0 332 37.0
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 6.2e-39 166.0 289 39.8
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 6.2e-39 166.0 284 40.1
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 8.1e-39 165.6 211 47.9
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 8.1e-39 165.6 300 39.0
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 8.1e-39 165.6 284 38.7
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 1.1e-38 165.2 300 39.0
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 1.8e-38 164.5 315 37.8
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 1.8e-38 164.5 340 35.3
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 1.8e-38 164.5 289 39.8
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 2.3e-38 164.1 332 37.0
FAN21G1989 Fragaria x ananassa HOM05D003289 ORTHO05D004594 2.3e-38 164.1 285 39.3
BcaB07g34067 Brassica carinata HOM05D003289 ORTHO05D004594 3.1e-38 163.7 364 36.3
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 4.0e-38 163.3 275 40.4
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 5.2e-38 162.9 310 38.7
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 5.2e-38 162.9 353 34.3
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 5.2e-38 162.9 300 38.7
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 5.2e-38 162.9 329 36.2
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 5.2e-38 162.9 351 34.5
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 5.2e-38 162.9 311 38.3
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 6.8e-38 162.5 332 37.0
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 6.8e-38 162.5 300 39.0
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 1.2e-37 161.8 315 38.4
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 1.2e-37 161.8 212 47.6
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 1.5e-37 161.4 289 38.8
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 2.0e-37 161.0 271 40.2
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 2.0e-37 161.0 385 34.0
Nitab4.5_0003532g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 2.6e-37 160.6 205 46.3
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 4.4e-37 159.8 398 33.7
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 4.4e-37 159.8 319 36.4
Ah.08g215940 Amaranthus hybridus HOM05D003289 ORTHO05D004594 7.5e-37 159.1 318 37.7
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 7.5e-37 159.1 340 35.3
Nitab4.5_0004240g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 7.5e-37 159.1 205 45.9
Peaxi162Scf00544g00920 Petunia axillaris HOM05D003289 ORTHO05D004594 7.5e-37 159.1 205 45.9
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 7.5e-37 159.1 211 47.4
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 9.9e-37 158.7 289 39.1
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 9.9e-37 158.7 294 38.8
Glyma.11G237700 Glycine max HOM05D003289 ORTHO05D004594 2.2e-36 157.5 294 38.4
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 2.9e-36 157.1 194 47.9
ATR0820G092 Amborella trichopoda HOM05D003289 ORTHO05D004594 3.7e-36 156.8 348 35.1
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 3.7e-36 156.8 307 37.8
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 4.9e-36 156.4 289 38.4
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 8.3e-36 155.6 283 39.2
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 1.1e-35 155.2 337 36.5
CDE02G3768 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 1.9e-35 154.5 286 37.4
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 2.4e-35 154.1 380 33.4
HanXRQChr09g0249471 Helianthus annuus HOM05D003289 ORTHO05D004594 4.1e-35 153.3 364 34.9
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 5.4e-35 152.9 384 33.1
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 4.3e-32 143.3 360 33.9
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 4.3e-32 143.3 320 36.2
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 2.4e-30 137.5 315 34.0
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 1.2e-29 135.2 200 41.5
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 9.9e-29 132.1 276 36.2
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 1.1e-27 128.6 180 46.7
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 1.4e-27 128.3 283 35.7
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 9.2e-27 125.6 311 35.7
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 4.3e-24 116.7 163 42.9
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 9.6e-24 115.5 200 38.5
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 2.8e-23 114.0 284 37.3
MELO3C002892.2 Cucumis melo HOM05D003289 ORTHO05D004594 4.0e-22 110.2 136 49.3
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 1.5e-21 108.2 417 29.0
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 2.0e-21 107.8 74 75.7
CBR_g8395 Chara braunii HOM05D003289 ORTHO05D004594 2.6e-21 107.5 223 38.1
Cpa.g.sc32.131 Carica papaya HOM05D003289 ORTHO05D004594 5.8e-21 106.3 69 75.4
Glyma.13G033700 Glycine max HOM05D003289 ORTHO05D004594 1.3e-20 105.1 69 73.9
CANSAT25G1376 Cannabis sativa HOM05D003289 ORTHO05D004594 4.9e-20 103.2 73 69.9
Glyma.18G157402 Glycine max HOM05D003289 ORTHO05D004594 4.9e-20 103.2 69 72.5
Cpa.g.sc32.132 Carica papaya HOM05D003289 ORTHO05D004594 1.1e-19 102.1 163 40.5
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 4.2e-19 100.1 162 42.0
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 7.1e-19 99.4 85 63.5
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 1.2e-18 98.6 118 54.2
CAN.G1177.10 Capsicum annuum HOM05D003289 ORTHO05D004594 1.2e-18 98.6 258 31.8
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 6.0e-18 96.3 195 34.9
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 2.5e-16 90.9 187 33.2
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 1.3e-15 88.6 129 41.9
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 1.1e-14 85.5 63 74.6
QL02p000127 Quercus lobata HOM05D003289 ORTHO05D004594 1.3e-12 78.6 67 62.7
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 6.4e-12 76.3 42 90.5
Os11g0247350 Oryza sativa ssp. japonica HOM05D012843 ORTHO05D017973 7.1e-11 72.8 117 35.9
PSO782G5595 Papaver somniferum HOM05D003289 ORTHO05D004594 2.7e-10 70.9 112 38.4
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 3.5e-10 70.5 42 83.3
arahy.Tifrunner.gnm1.ann1.98W5WM Arachis hypogaea HOM05D003289 ORTHO05D016559 4.6e-10 70.1 38 86.8
Phvul.003G000400 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 1.3e-09 68.6 39 82.1
FAN24G0288 Fragaria x ananassa HOM05D012843 ORTHO05D017973 5.1e-09 66.6 104 37.5
FAN06G4828 Fragaria x ananassa HOM05D012843 ORTHO05D017973 8.7e-09 65.9 104 37.5
FAN08G2126 Fragaria x ananassa HOM05D012843 ORTHO05D017973 8.7e-09 65.9 104 37.5
COL.COLO4_06999 Corchorus olitorius HOM05D003289 ORTHO05D004594 3.1e-06 57.4 42 69.0
Pp3c18_14020 Physcomitrium patens HOM05D003289 ORTHO05D004594 6.9e-06 56.2 114 38.6


User provided reference genes

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