Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 4.2e-204 714.5 381 100.0
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 2.8e-195 685.3 388 95.9
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 1.8e-194 682.6 380 96.3
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 1.2e-190 669.8 388 94.1
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 3.3e-180 635.2 365 94.5
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 9.5e-180 633.6 436 81.7
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 7.8e-150 534.3 437 72.8
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.4e-135 486.9 417 65.9
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 2.8e-131 472.6 420 62.1
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 8.2e-131 471.1 416 63.5
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.4e-130 470.3 409 65.5
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 3.1e-130 469.2 414 63.0
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 1.5e-129 466.8 411 64.7
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.6e-129 466.1 417 63.1
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 3.4e-129 465.7 415 62.2
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.9e-128 462.6 415 62.2
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 4.9e-128 461.8 425 62.4
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.4e-127 460.3 425 62.1
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.9e-127 459.9 417 61.6
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.9e-127 459.9 425 62.1
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 3.2e-127 459.1 414 62.6
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 9.3e-127 457.6 398 64.1
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 1.6e-126 456.8 408 64.5
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 3.5e-126 455.7 413 62.7
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 4.6e-126 455.3 415 63.4
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 6.0e-126 454.9 408 62.5
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 6.0e-126 454.9 415 61.9
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 6.0e-126 454.9 414 60.1
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 8.7e-125 451.1 415 62.4
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.1e-124 450.7 413 62.5
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 1.5e-124 450.3 416 61.3
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 1.5e-124 450.3 417 60.4
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 1.9e-124 449.9 424 63.2
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 1.9e-124 449.9 414 63.0
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 3.3e-124 449.1 418 61.0
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 4.3e-124 448.7 424 63.0
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 4.3e-124 448.7 411 61.1
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 5.7e-124 448.4 416 61.3
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 5.7e-124 448.4 424 62.3
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 5.7e-124 448.4 410 61.2
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 7.4e-124 448.0 410 62.4
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 9.7e-124 447.6 417 61.6
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 2.2e-123 446.4 419 61.8
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 2.8e-123 446.0 421 61.0
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.7e-123 445.7 415 61.2
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 4.8e-123 445.3 417 60.9
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 6.3e-123 444.9 421 60.6
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 1.4e-122 443.7 417 61.2
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.4e-122 443.0 415 62.7
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 5.3e-122 441.8 420 61.2
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 5.3e-122 441.8 428 60.3
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 5.3e-122 441.8 409 60.9
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.2e-121 440.7 412 60.0
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.5e-121 440.3 431 58.2
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 2.0e-121 439.9 420 61.4
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 2.6e-121 439.5 413 61.0
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 3.4e-121 439.1 407 61.4
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 4.5e-121 438.7 416 60.6
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 2.2e-120 436.4 421 59.9
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 5.0e-120 435.3 415 60.0
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 8.5e-120 434.5 424 60.8
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 8.5e-120 434.5 416 59.1
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 4.6e-118 428.7 413 58.1
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 7.9e-118 427.9 408 60.3
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 1.0e-117 427.6 405 58.0
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 1.4e-117 427.2 421 58.0
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 1.4e-117 427.2 403 60.3
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 3.0e-117 426.0 410 59.0
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 3.0e-117 426.0 400 58.5
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 5.1e-117 425.2 416 58.2
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 8.8e-117 424.5 413 58.6
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 8.8e-117 424.5 412 57.3
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 8.8e-117 424.5 419 57.8
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.1e-116 424.1 418 59.1
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 2.5e-116 422.9 405 59.3
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 2.5e-116 422.9 412 59.5
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 7.4e-116 421.4 416 58.7
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.2e-115 419.9 405 58.3
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 5.3e-114 415.2 406 57.6
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 5.3e-114 415.2 411 55.7
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 9.1e-114 414.5 409 56.5
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 7.7e-113 411.4 405 58.3
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 8.5e-112 407.9 420 56.7
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 2.5e-111 406.4 420 56.4
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 5.5e-111 405.2 383 59.5
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 6.1e-110 401.7 417 55.6
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 7.9e-110 401.4 323 66.6
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 7.9e-110 401.4 323 66.9
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 1.0e-109 401.0 426 54.9
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 6.7e-109 398.3 429 55.0
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 2.0e-108 396.7 320 66.9
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 5.7e-108 395.2 373 59.0
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.3e-107 394.0 317 66.9
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.2e-107 393.3 438 53.9
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.8e-107 392.1 319 65.8
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 1.5e-105 387.1 347 62.8
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 1.3e-104 384.0 333 63.4
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 1.3e-104 384.0 333 63.4
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 5.0e-104 382.1 347 62.8
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 2.5e-103 379.8 388 55.7
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 8.0e-102 374.8 386 56.0
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 5.7e-100 368.6 405 55.6
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 2.2e-99 366.7 406 53.4
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.1e-94 348.6 347 55.3
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 5.2e-93 345.5 232 76.3
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.2e-93 345.5 396 50.5
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.2e-91 340.1 348 54.0
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 9.1e-90 334.7 385 52.5
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 5.9e-89 332.0 171 98.2
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 2.7e-86 323.2 441 44.9
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 8.0e-86 321.6 417 50.1
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 2.6e-84 316.6 440 45.7
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 2.1e-78 297.0 287 59.2
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.2e-75 287.0 348 48.3
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 1.8e-69 267.3 319 50.2
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 6.8e-69 265.4 153 86.9
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 9.8e-68 261.5 322 48.1
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 1.6e-62 244.2 283 51.9
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 5.2e-61 239.2 310 47.4
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.2e-57 228.0 120 97.5
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 2.1e-57 227.3 277 51.3
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.1e-57 227.3 163 68.7
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.1e-55 221.5 137 82.5
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 4.1e-50 203.0 130 77.7
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 4.3e-47 193.0 164 61.6
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 2.1e-41 174.1 118 72.9
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 2.7e-41 173.7 159 58.5
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.9e-39 167.5 273 40.7
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 3.6e-38 163.3 156 51.9
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 1.2e-36 158.3 397 35.5
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 3.3e-31 140.2 245 39.6
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 2.8e-30 137.1 72 94.4
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 2.0e-28 131.0 68 95.6
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 4.9e-27 126.3 66 93.9
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 8.4e-27 125.6 116 57.8
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.4e-26 124.8 68 91.2
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.2e-25 121.7 64 89.1
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.5e-25 120.2 64 87.5
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.5e-25 120.2 64 87.5
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.8e-24 117.9 64 85.9
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.1e-21 108.6 97 58.8
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.5e-17 93.6 108 50.9
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 2.3e-16 90.9 153 38.6
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 3.0e-16 90.5 153 40.5
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 1.5e-12 78.2 141 37.6
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 8.4e-11 72.4 72 54.2
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 8.4e-11 72.4 72 54.2
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.1e-10 72.0 144 36.8


User provided reference genes

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