Gene: Solyc09g065280.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc09g065280.4
  • Transcript Identifier Solyc09g065280.4.1
  • Gene Type Coding gene
  • Location SL4.0ch09 : 59444926-59448302 : positive

Gene Family Information

  • ID HOM05D004820
  • #Genes/#Species 153/84
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc09g065280.4.1
  • uniprot A0A3Q7I437
  • gene_id Solyc09g065280

Descriptions

  • Description pre-mRNA-splicing factor 18 (AHRD V3.3 *** A0A2I4GH45_9ROSI)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
IEA
InterProRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0071048
IBA
GOA Databasenuclear retention of unspliced pre-mRNA at the site of transcription
GO:0000350
IBA
GOA Databasegeneration of catalytic spliceosome for second transesterification step
GO:0000380
ISO
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome AT1G03140

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IEA
InterProspliceosomal complex
GO:0005634
IEA
GOA Databasenucleus
GO:0071021
IBA
GOA DatabaseU2-type post-spliceosomal complex
GO:0046540
IBA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0005682
IBA
GOA DatabaseU5 snRNP

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039979 Pre-mRNA-splicing factor 18
IPR036285 PRP4-like superfamily
IPR014906 Pre-mRNA processing factor 4 (PRP4)-like
IPR004098 Prp18
Mapman id Description
35.1 not assigned.annotated