Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb385270 Zea mays HOM05D003051 ORTHO05D003932 2.7e-103 378.6 189 100.0
Zm00001eb398510 Zea mays HOM05D003051 ORTHO05D003932 1.5e-77 293.1 158 93.7
Zm00001eb089770 Zea mays HOM05D003051 ORTHO05D003932 6.3e-76 287.7 158 93.0
Zm00001eb010860 Zea mays HOM05D003051 ORTHO05D003932 9.2e-75 283.9 158 89.9
Os03g0252800 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 4.3e-72 275.0 158 86.1
Os02g0806900 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 4.7e-71 271.6 163 81.6
Os10g0189600 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 2.0e-69 266.2 158 81.6
Zm00001eb089180 Zea mays HOM05D003051 ORTHO05D003932 4.9e-68 261.5 137 93.4
HPP92_014444 Vanilla planifolia HOM05D003051 ORTHO05D003932 1.4e-59 233.4 156 74.4
Sc02g0008680 Simmondsia chinensis HOM05D003051 ORTHO05D003932 9.9e-53 210.7 156 67.3
CDE04G1802 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 4.6e-50 201.8 138 69.6
Hund22046 Selenicereus undatus HOM05D003051 ORTHO05D003932 7.8e-50 201.1 152 65.1
CSS0012370 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 1.3e-49 200.3 156 63.5
Thecc.06G056600 Theobroma cacao HOM05D003051 ORTHO05D003932 1.7e-49 199.9 155 66.5
Manes.12G080800 Manihot esculenta HOM05D003051 ORTHO05D003932 2.3e-49 199.5 156 63.5
Ciclev10025496m.g Citrus clementina HOM05D003051 ORTHO05D003932 3.0e-49 199.1 156 65.4
CSS0022220 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 3.9e-49 198.7 154 64.3
CANSAT78G1339 Cannabis sativa HOM05D003051 ORTHO05D003932 3.9e-49 198.7 146 67.1
CDE03G0158 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 8.6e-49 197.6 138 68.8
TAR636G0749 Trochodendron aralioides HOM05D003051 ORTHO05D003932 1.1e-48 197.2 156 63.5
COL.COLO4_31149 Corchorus olitorius HOM05D003051 ORTHO05D003932 1.5e-48 196.8 155 65.2
RcHm_v2.0_Chr6g0308441 Rosa chinensis HOM05D003051 ORTHO05D003932 1.5e-48 196.8 152 65.1
Actinidia17302 Actinidia chinensis HOM05D003051 ORTHO05D003932 1.9e-48 196.4 158 62.0
Gohir.A10G001900 Gossypium hirsutum HOM05D003051 ORTHO05D003932 1.9e-48 196.4 156 62.8
Lsat_1_v5_gn_5_96860 Lactuca sativa HOM05D003051 ORTHO05D003932 1.9e-48 196.4 157 61.8
QL02p004168 Quercus lobata HOM05D003051 ORTHO05D003932 1.9e-48 196.4 154 66.2
Atru.chr13.2284 Acer truncatum HOM05D003051 ORTHO05D003932 2.5e-48 196.1 160 63.1
Cfa006516 Carpinus fangiana HOM05D003051 ORTHO05D003932 2.5e-48 196.1 156 63.5
Haze_04268 Corylus avellana HOM05D003051 ORTHO05D003932 2.5e-48 196.1 154 65.6
DCAR_009315 Daucus carota HOM05D003051 ORTHO05D003932 2.5e-48 196.1 152 62.5
Dinv37116 Davidia involucrata HOM05D003051 ORTHO05D003932 2.5e-48 196.1 156 62.8
Duzib235G0371 Durio zibethinus HOM05D003051 ORTHO05D003932 2.5e-48 196.1 156 63.5
PGR102G2746 Punica granatum HOM05D003051 ORTHO05D003932 2.5e-48 196.1 161 61.5
FvH4_2g33970 Fragaria vesca HOM05D003051 ORTHO05D003932 3.3e-48 195.7 152 64.5
FAN24G2348 Fragaria x ananassa HOM05D003051 ORTHO05D003932 3.3e-48 195.7 152 64.5
Haze_06246 Corylus avellana HOM05D003051 ORTHO05D003932 4.3e-48 195.3 154 65.6
Rhsim10G0081500 Rhododendron simsii HOM05D003051 ORTHO05D003932 4.3e-48 195.3 154 64.9
Cc08_g11730 Coffea canephora HOM05D003051 ORTHO05D003932 5.6e-48 194.9 138 65.9
DCAR_020911 Daucus carota HOM05D003051 ORTHO05D003932 5.6e-48 194.9 141 66.0
Duzib160G0152 Durio zibethinus HOM05D003051 ORTHO05D003932 7.3e-48 194.5 155 65.2
Glyma.17G239700 Glycine max HOM05D003051 ORTHO05D003932 7.3e-48 194.5 156 62.8
Nn3g21075 Nelumbo nucifera HOM05D003051 ORTHO05D003932 7.3e-48 194.5 143 65.7
MELO3C010839.2 Cucumis melo HOM05D003051 ORTHO05D003932 9.5e-48 194.1 141 66.0
Lalb_Chr14g0368521 Lupinus albus HOM05D003051 ORTHO05D003932 9.5e-48 194.1 158 63.3
Glyma.14G085100 Glycine max HOM05D003051 ORTHO05D003932 1.2e-47 193.7 156 62.2
Gohir.A10G159000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 1.2e-47 193.7 156 62.2
Gorai.011G091200 Gossypium raimondii HOM05D003051 ORTHO05D003932 1.2e-47 193.7 156 62.2
Gohir.D10G084100 Gossypium hirsutum HOM05D003051 ORTHO05D003932 1.6e-47 193.4 156 62.2
TWI63G1017 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 1.6e-47 193.4 138 68.8
Dinv36492 Davidia involucrata HOM05D003051 ORTHO05D003932 2.1e-47 193.0 156 62.2
Prupe.1G431600 Prunus persica HOM05D003051 ORTHO05D003932 2.1e-47 193.0 156 62.8
TWI18G0714 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 2.1e-47 193.0 156 63.5
Gohir.D10G002000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 2.8e-47 192.6 156 62.2
Gorai.011G002400 Gossypium raimondii HOM05D003051 ORTHO05D003932 2.8e-47 192.6 156 62.2
Sed0025362 Sechium edule HOM05D003051 ORTHO05D003932 2.8e-47 192.6 146 65.1
Lalb_Chr22g0354981 Lupinus albus HOM05D003051 ORTHO05D003932 3.6e-47 192.2 152 63.2
GSVIVG01000259001 Vitis vinifera HOM05D003051 ORTHO05D003932 3.6e-47 192.2 156 60.3
Ah.01g003510 Amaranthus hybridus HOM05D003051 ORTHO05D003932 4.7e-47 191.8 141 66.7
Aqoxy2G01411 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 4.7e-47 191.8 156 60.9
ClCG08G016130 Citrullus lanatus HOM05D003051 ORTHO05D003932 4.7e-47 191.8 141 65.2
Peaxi162Scf01013g00014 Petunia axillaris HOM05D003051 ORTHO05D003932 4.7e-47 191.8 134 68.7
TPR.G18000 Trifolium pratense HOM05D003051 ORTHO05D003932 4.7e-47 191.8 156 62.2
AT4G36480 Arabidopsis thaliana HOM05D003051 ORTHO05D003932 6.2e-47 191.4 161 61.5
Psat2g055640 Pisum sativum HOM05D003051 ORTHO05D003932 6.2e-47 191.4 156 60.9
HanXRQChr05g0150761 Helianthus annuus HOM05D003051 ORTHO05D003932 8.1e-47 191.0 167 59.9
Solyc11g019950.2 Solanum lycopersicum HOM05D003051 ORTHO05D003932 8.1e-47 191.0 134 67.2
Sopen11g010060 Solanum pennellii HOM05D003051 ORTHO05D003932 8.1e-47 191.0 134 67.2
Psat0s3398g0040 Pisum sativum HOM05D003051 ORTHO05D003932 1.1e-46 190.7 154 62.3
VMungo0647G0828 Vigna mungo HOM05D003051 ORTHO05D003932 1.1e-46 190.7 156 62.2
EL10Ac1g02184 Beta vulgaris HOM05D003051 ORTHO05D003932 1.4e-46 190.3 157 61.1
Lj7A426G51 Lonicera japonica HOM05D003051 ORTHO05D003932 1.4e-46 190.3 156 60.9
Medtr1g018970 Medicago truncatula HOM05D003051 ORTHO05D003932 1.4e-46 190.3 156 60.9
AL7G14600 Arabidopsis lyrata HOM05D003051 ORTHO05D003932 1.8e-46 189.9 161 61.5
ECA232G4354 Erigeron canadensis HOM05D003051 ORTHO05D003932 1.8e-46 189.9 157 58.6
Migut.B00582 Erythranthe guttata HOM05D003051 ORTHO05D003932 1.8e-46 189.9 141 64.5
Nitab4.5_0000167g0090 Nicotiana tabacum HOM05D003051 ORTHO05D003932 1.8e-46 189.9 159 61.0
PGSC0003DMG400027619 Solanum tuberosum HOM05D003051 ORTHO05D003932 1.8e-46 189.9 134 67.2
Nitab4.5_0001579g0140 Nicotiana tabacum HOM05D003051 ORTHO05D003932 2.4e-46 189.5 159 61.0
Potri.012G043800 Populus trichocarpa HOM05D003051 ORTHO05D003932 2.4e-46 189.5 156 62.2
vmacro08505 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 2.4e-46 189.5 158 62.0
vmacro22602 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 2.4e-46 189.5 158 62.0
Aa31LG6G13270 Aethionema arabicum HOM05D003051 ORTHO05D003932 3.1e-46 189.1 161 60.9
CAN.G2.17 Capsicum annuum HOM05D003051 ORTHO05D003932 3.1e-46 189.1 134 67.9
Nitab4.5_0000318g0090 Nicotiana tabacum HOM05D003051 ORTHO05D003932 3.1e-46 189.1 159 59.1
THA.LOC104807468 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 3.1e-46 189.1 151 62.3
CARHR244800 Cardamine hirsuta HOM05D003051 ORTHO05D003932 4.0e-46 188.7 161 60.9
CsaV3_2G026490 Cucumis sativus L. HOM05D003051 ORTHO05D003932 5.2e-46 188.3 150 61.3
Medtr3g054030 Medicago truncatula HOM05D003051 ORTHO05D003932 5.2e-46 188.3 156 60.3
Phvul.001G024100 Phaseolus vulgaris HOM05D003051 ORTHO05D003932 5.2e-46 188.3 156 60.3
SalBow5G0877 Salvia bowleyana HOM05D003051 ORTHO05D003932 5.2e-46 188.3 149 61.7
HanXRQChr05g0134541 Helianthus annuus HOM05D003051 ORTHO05D003932 6.8e-46 188.0 167 59.3
HanXRQChr05g0134611 Helianthus annuus HOM05D003051 ORTHO05D003932 6.8e-46 188.0 167 59.3
FAN15G3751 Fragaria x ananassa HOM05D003051 ORTHO05D003932 8.9e-46 187.6 162 60.5
FAN27G0244 Fragaria x ananassa HOM05D003051 ORTHO05D003932 8.9e-46 187.6 162 60.5
TAR374G0623 Trochodendron aralioides HOM05D003051 ORTHO05D003932 8.9e-46 187.6 156 59.6
TAR374G0874 Trochodendron aralioides HOM05D003051 ORTHO05D003932 8.9e-46 187.6 156 59.6
Ca_05631_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 1.2e-45 187.2 156 59.6
Thhalv10025064m.g Eutrema salsugineum HOM05D003051 ORTHO05D003932 1.2e-45 187.2 157 61.8
AUR62035016 Chenopodium quinoa HOM05D003051 ORTHO05D003932 2.0e-45 186.4 156 60.3
Cc11_g04320 Coffea canephora HOM05D003051 ORTHO05D003932 2.0e-45 186.4 137 64.2
THA.LOC104804240 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 2.0e-45 186.4 151 60.3
A01p02390 Brassica napus HOM05D003051 ORTHO05D003932 2.6e-45 186.0 157 60.5
AUR62041898 Chenopodium quinoa HOM05D003051 ORTHO05D003932 2.6e-45 186.0 156 59.6
Lj5g0018018 Lotus japonicus HOM05D003051 ORTHO05D003932 2.6e-45 186.0 156 59.6
Peaxi162Scf00699g00636 Petunia axillaris HOM05D003051 ORTHO05D003932 2.6e-45 186.0 152 58.6
C07p61710 Brassica napus HOM05D003051 ORTHO05D003932 4.4e-45 185.3 157 61.1
BolC7t46596H Brassica oleracea HOM05D003051 ORTHO05D003932 4.4e-45 185.3 157 61.1
BraA01t00227Z Brassica rapa HOM05D003051 ORTHO05D003932 4.4e-45 185.3 157 59.9
Medtr5g072020 Medicago truncatula HOM05D003051 ORTHO05D003932 4.4e-45 185.3 156 59.6
PGR119G2325 Punica granatum HOM05D003051 ORTHO05D003932 4.4e-45 185.3 156 60.3
TPR.G3789 Trifolium pratense HOM05D003051 ORTHO05D003932 5.8e-45 184.9 156 60.9
Carub.0007s0384 Capsella rubella HOM05D003051 ORTHO05D003932 9.9e-45 184.1 161 59.6
Sabra12G0030700 Salix brachista HOM05D003051 ORTHO05D003932 1.7e-44 183.3 161 59.0
Sabra15G0028600 Salix brachista HOM05D003051 ORTHO05D003932 1.7e-44 183.3 156 59.6
A03p64250 Brassica napus HOM05D003051 ORTHO05D003932 2.2e-44 183.0 157 60.5
BraA03t15496Z Brassica rapa HOM05D003051 ORTHO05D003932 2.2e-44 183.0 157 60.5
Ca_13275_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 2.2e-44 183.0 156 58.3
Solyc08g066020.3 Solanum lycopersicum HOM05D003051 ORTHO05D003932 2.9e-44 182.6 159 57.9
Potri.015G034600 Populus trichocarpa HOM05D003051 ORTHO05D003932 4.9e-44 181.8 156 60.3
CSS0004660 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 8.4e-44 181.0 155 58.1
CAN.G9.7 Capsicum annuum HOM05D003051 ORTHO05D003932 8.4e-44 181.0 159 57.2
MD08G1095600 Malus domestica HOM05D003051 ORTHO05D003932 1.1e-43 180.6 156 58.3
Sp7g34130 Schrenkiella parvula HOM05D003051 ORTHO05D003932 1.4e-43 180.3 157 59.2
arahy.Tifrunner.gnm1.ann1.11SE8F Arachis hypogaea HOM05D003051 ORTHO05D003932 1.9e-43 179.9 156 59.0
arahy.Tifrunner.gnm1.ann1.GJWA3D Arachis hypogaea HOM05D003051 ORTHO05D003932 1.9e-43 179.9 156 59.0
Sopen08g019680 Solanum pennellii HOM05D003051 ORTHO05D003932 3.2e-43 179.1 159 57.2
Eucgr.D00310 Eucalyptus grandis HOM05D003051 ORTHO05D003932 4.2e-43 178.7 136 64.0
Zm00001eb302850 Zea mays HOM05D003051 ORTHO05D003932 5.4e-43 178.3 98 93.9
MD15G1077700 Malus domestica HOM05D003051 ORTHO05D003932 7.1e-43 177.9 154 59.1
ATR0222G029 Amborella trichopoda HOM05D003051 ORTHO05D003932 9.2e-43 177.6 139 64.0
Lsat_1_v5_gn_8_62240 Lactuca sativa HOM05D003051 ORTHO05D003932 1.6e-42 176.8 146 59.6
SGA_v2.0_scaffold28G11959 Striga asiatica HOM05D003051 ORTHO05D003932 1.6e-42 176.8 120 67.5
arahy.Tifrunner.gnm1.ann1.QNA1HW Arachis hypogaea HOM05D003051 ORTHO05D003932 7.8e-42 174.5 156 55.8
Nitab4.5_0002021g0050 Nicotiana tabacum HOM05D003051 ORTHO05D003932 1.0e-41 174.1 203 47.3
SGA_v2.0_scaffold83G26334 Striga asiatica HOM05D003051 ORTHO05D003932 1.3e-41 173.7 120 65.8
arahy.Tifrunner.gnm1.ann1.53VZ2L Arachis hypogaea HOM05D003051 ORTHO05D003932 1.7e-41 173.3 156 55.1
Lalb_Chr24g0399381 Lupinus albus HOM05D003051 ORTHO05D003932 1.7e-41 173.3 121 67.8
Mapoly0025s0004 Marchantia polymorpha HOM05D003051 ORTHO05D003932 2.3e-41 172.9 141 61.0
PSO384G5107 Papaver somniferum HOM05D003051 ORTHO05D003932 5.1e-41 171.8 141 58.9
PSO339G0046 Papaver somniferum HOM05D003051 ORTHO05D003932 6.6e-41 171.4 141 58.2
RcHm_v2.0_Chr7g0217761 Rosa chinensis HOM05D003051 ORTHO05D003932 2.5e-40 169.5 144 61.1
MBI18_g02835_MAGBIO Magnolia biondii HOM05D003051 ORTHO05D003932 1.2e-39 167.2 121 65.3
Zm00001eb093690 Zea mays HOM05D003051 ORTHO05D003932 6.9e-38 161.4 125 72.8
BcaNung05309 Brassica carinata HOM05D003051 ORTHO05D003932 9.9e-37 157.5 165 53.9
Pp3c7_5350 Physcomitrium patens HOM05D003051 ORTHO05D003932 9.9e-37 157.5 130 54.6
Zm00001eb168990 Zea mays HOM05D003051 ORTHO05D003932 1.3e-36 157.1 125 71.2
vmacro18084 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 6.4e-36 154.8 251 38.2
Manes.13G154966 Manihot esculenta HOM05D003051 ORTHO05D003932 3.5e-34 149.1 155 51.6
CBR_g21746 Chara braunii HOM05D003051 ORTHO05D003932 7.8e-34 147.9 123 58.5
unitig_62.g23741 Utricularia gibba HOM05D003051 ORTHO05D003932 1.3e-33 147.1 140 52.9
SMO361G0305 Selaginella moellendorffii HOM05D003051 ORTHO05D003932 1.7e-33 146.7 138 52.2
CiPaw.09G069100 Carya illinoinensis HOM05D003051 ORTHO05D003932 2.6e-29 132.9 90 66.7
AagrBONN_evm.TU.Sc2ySwM_362.1674 Anthoceros agrestis HOM05D003051 ORTHO05D003932 5.8e-29 131.7 121 49.6
Hma1.2p1_0343F.1_g131030 Hydrangea macrophylla HOM05D003051 ORTHO05D003932 4.2e-27 125.6 100 60.0
Zm00001eb311980 Zea mays HOM05D003051 ORTHO05D003932 3.3e-24 115.9 60 91.7
Zm00001eb306880 Zea mays HOM05D003051 ORTHO05D003932 7.4e-24 114.8 61 90.2
Zm00001eb342140 Zea mays HOM05D003051 ORTHO05D003932 1.1e-22 110.9 61 86.9
Cre03.g146507 Chlamydomonas reinhardtii HOM05D003051 ORTHO05D003932 4.5e-21 105.5 126 42.1
MSTRG.20290 Avicennia marina HOM05D003051 ORTHO05D003932 2.9e-20 102.8 67 65.7
CSS0032175 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 4.9e-20 102.1 67 67.2
Cpa.g.sc7.66 Carica papaya HOM05D003051 ORTHO05D003932 1.1e-19 100.9 59 72.9
SEGI_33366 Sequoiadendron giganteum HOM05D003051 ORTHO05D003932 1.9e-19 100.1 59 78.0
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 3.2e-19 99.4 59 71.2
SEGI_13307 Sequoiadendron giganteum HOM05D003051 ORTHO05D003932 7.1e-19 98.2 59 74.6
Gorai.002G090700 Gossypium raimondii HOM05D003051 ORTHO05D003932 7.9e-18 94.7 56 73.2
PRCOL_00000102 Prasinoderma coloniale HOM05D003051 ORTHO05D003932 1.8e-17 93.6 132 38.6
AUR62025029 Chenopodium quinoa HOM05D003051 ORTHO05D003932 2.3e-17 93.2 154 39.0
AUR62006503 Chenopodium quinoa HOM05D003051 ORTHO05D003932 5.1e-17 92.0 140 40.0
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 4.0e-14 82.4 67 61.2
Hund25238 Selenicereus undatus HOM05D003051 ORTHO05D003932 5.3e-14 82.0 60 63.3
Psat0s3398g0280 Pisum sativum HOM05D003051 ORTHO05D003932 2.6e-13 79.7 46 76.1
Zm00001eb201300 Zea mays HOM05D003051 ORTHO05D003932 2.9e-12 76.3 40 92.5
Haze_27103 Corylus avellana HOM05D003051 ORTHO05D003932 8.4e-12 74.7 93 40.9
Cfa022805 Carpinus fangiana HOM05D003051 ORTHO05D003932 3.2e-11 72.8 121 36.4
Psat0s3398g0120 Pisum sativum HOM05D003051 ORTHO05D003932 7.1e-11 71.6 40 75.0
Cpa.g.sc7.67 Carica papaya HOM05D003051 ORTHO05D024854 9.3e-11 71.2 64 59.4
Oeu019029.1 Olea europaea HOM05D003051 ORTHO05D003932 4.6e-10 68.9 57 63.2
CSS0036370 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 1.1e-08 64.3 87 42.5
HanXRQChr05g0138611 Helianthus annuus HOM05D003051 ORTHO05D003932 1.6e-07 60.5 39 64.1
Zm00001eb178340 Zea mays HOM05D003051 ORTHO05D003932 1.8e-06 57.0 27 88.9
SEGI_38614 Sequoiadendron giganteum HOM05D003051 ORTHO05D024854 5.3e-06 55.5 46 56.5
Gorai.002G090800 Gossypium raimondii HOM05D003051 ORTHO05D003932 6.9e-06 55.1 44 59.1
Hma1.2p1_2677F.1_g326730 Hydrangea macrophylla HOM05D003051 ORTHO05D003932 9.0e-06 54.7 32 71.9


User provided reference genes

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