Gene: AT4G36480

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G36480
  • Transcript Identifier AT4G36480.3
  • Gene Type Coding gene
  • Location Chr4 : 17218598-17220439 : positive

Gene Family Information

  • ID HOM05D003051
  • #Genes/#Species 225/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G36480.3
  • symbol LCB1
  • Alias ATLCB1,long-chain base1,EMB2779,EMBRYO DEFECTIVE 2779,FBR11,FUMONISIN B1 RESISTANT 11
  • uniprot Q94IB8

Descriptions

  • Description long-chain base1
  • Computational description long-chain base1 (LCB1); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: cell growth, sphingolipid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: long chain base2 (TAIR:AT5G23670.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046513
IBA
Gene Ontologyceramide biosynthetic process1
GO:0009058
IEA
Gene Ontologybiosynthetic process
GO:0009058
IEA
InterProbiosynthetic process
GO:0006629
IEA
GOA Databaselipid metabolic process
GO:0006665
IEA
GOA Databasesphingolipid metabolic process
GO:0046512
IBA
Gene Ontologysphingosine biosynthetic process1
GO:0043067
IMP
Gene Ontologyregulation of programmed cell death2
GO:0030148
TAS
Gene Ontologysphingolipid biosynthetic process3
GO:0009825
IMP
Gene Ontologymultidimensional cell growth3
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
Gene Ontologycatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0030170
IEA
Gene Ontologypyridoxal phosphate binding
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016746
IEA
GOA Databaseacyltransferase activity
GO:0004758
IEA
GOA Databaseserine C-palmitoyltransferase activity
GO:0004758
IGI
IBA
Gene Ontologyserine C-palmitoyltransferase activity1 3
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0005783
IDA, HDA
IBA
Gene Ontologyendoplasmic reticulum1 3 4
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005789
IEA
GOA Databaseendoplasmic reticulum membrane
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004839 Aminotransferase, class I/classII
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
IPR015424 Pyridoxal phosphate-dependent transferase
Mapman id Description
5.4.1.1 Lipid metabolism.sphingolipid biosynthesis.serine C-palmitoyltransferase complex.catalytic subunit LCB1