Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.7e-31 138.7 69 100.0
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 2.1e-29 131.7 66 98.5
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 2.1e-29 131.7 66 98.5
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 3.6e-29 131.0 68 95.6
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 7.6e-27 123.2 68 91.2
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 7.6e-27 123.2 68 91.2
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 7.6e-27 123.2 68 91.2
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 7.6e-27 123.2 68 91.2
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 7.6e-27 123.2 68 91.2
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 2.2e-26 121.7 68 89.7
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 4.6e-24 114.0 68 85.3
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 7.8e-24 113.2 68 83.8
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 7.8e-24 113.2 68 83.8
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.7e-23 112.1 68 82.4
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.7e-23 112.1 68 82.4
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 3.0e-23 111.3 68 80.9
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 3.9e-23 110.9 68 80.9
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 6.6e-23 110.2 68 80.9
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 6.6e-23 110.2 66 81.8
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 6.6e-23 110.2 68 80.9
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 1.1e-22 109.4 68 79.4
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.1e-22 109.4 68 79.4
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.1e-22 109.4 68 79.4
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.5e-22 109.0 68 79.4
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.5e-22 109.0 68 79.4
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.5e-22 109.0 68 79.4
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 1.9e-22 108.6 66 80.3
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 1.9e-22 108.6 68 79.4
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 1.9e-22 108.6 68 79.4
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 1.9e-22 108.6 68 79.4
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.9e-22 108.6 68 77.9
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.9e-22 108.6 68 79.4
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 1.9e-22 108.6 68 80.9
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 3.3e-22 107.8 66 77.3
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 3.3e-22 107.8 68 79.4
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 4.3e-22 107.5 68 77.9
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 4.3e-22 107.5 68 79.4
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 5.6e-22 107.1 68 79.4
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 5.6e-22 107.1 68 79.4
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 5.6e-22 107.1 68 77.9
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 5.6e-22 107.1 68 79.4
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 5.6e-22 107.1 68 77.9
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 5.6e-22 107.1 68 76.5
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.6e-22 107.1 68 77.9
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 5.6e-22 107.1 68 79.4
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 5.6e-22 107.1 68 79.4
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 5.6e-22 107.1 68 79.4
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 7.3e-22 106.7 68 77.9
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 7.3e-22 106.7 68 79.4
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 7.3e-22 106.7 68 79.4
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 9.6e-22 106.3 68 77.9
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 9.6e-22 106.3 68 77.9
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 9.6e-22 106.3 68 77.9
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 1.2e-21 105.9 68 77.9
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.2e-21 105.9 68 76.5
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.2e-21 105.9 68 76.5
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 1.2e-21 105.9 68 77.9
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 1.2e-21 105.9 68 77.9
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 1.2e-21 105.9 68 76.5
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 1.6e-21 105.5 68 75.0
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 1.6e-21 105.5 68 76.5
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.6e-21 105.5 68 76.5
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 2.8e-21 104.8 68 77.9
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 3.6e-21 104.4 68 76.5
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 3.6e-21 104.4 68 76.5
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 3.6e-21 104.4 68 75.0
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 3.6e-21 104.4 68 77.9
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 4.7e-21 104.0 68 73.5
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 6.2e-21 103.6 68 76.5
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 6.2e-21 103.6 68 76.5
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 8.1e-21 103.2 68 76.5
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 1.1e-20 102.8 68 75.0
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 3.1e-20 101.3 68 73.5
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 5.2e-20 100.5 68 73.5
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 5.2e-20 100.5 68 72.1
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.2e-19 99.4 68 70.6
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.5e-19 99.0 68 72.1
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 2.6e-19 98.2 68 69.1
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 3.4e-19 97.8 68 73.5
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 9.9e-19 96.3 68 66.2
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 1.7e-18 95.5 68 69.1
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 1.7e-18 95.5 68 69.1
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.2e-18 95.1 68 69.1
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 3.8e-18 94.4 64 71.9
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 3.8e-18 94.4 69 68.1
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 4.9e-18 94.0 68 67.6
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 4.9e-18 94.0 68 67.6
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 6.4e-18 93.6 68 67.6
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 8.4e-18 93.2 68 67.6
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 8.4e-18 93.2 68 67.6
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 3.2e-17 91.3 68 66.2
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 7.1e-17 90.1 68 64.7
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 7.1e-17 90.1 68 64.7
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 7.1e-17 90.1 68 64.7
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 7.1e-17 90.1 68 64.7
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 7.1e-17 90.1 68 64.7
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 7.1e-17 90.1 68 64.7
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 7.1e-17 90.1 68 64.7
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 9.3e-17 89.7 62 66.1
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 2.1e-16 88.6 68 58.8
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 2.7e-16 88.2 68 63.2
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 2.7e-16 88.2 68 61.8
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 6.0e-16 87.0 69 66.7
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.0e-15 86.3 68 64.7
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 1.7e-15 85.5 68 63.2
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 3.0e-15 84.7 68 63.2
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 5.1e-15 84.0 68 61.8
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.1e-15 84.0 68 63.2
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 8.7e-15 83.2 68 61.8
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 8.7e-15 83.2 68 61.8
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 8.7e-15 83.2 67 61.2
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 1.9e-14 82.0 68 60.3
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 1.9e-14 82.0 64 60.9
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.5e-14 81.6 68 60.3
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 2.5e-14 81.6 68 60.3
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.3e-14 81.3 66 60.6
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 4.3e-14 80.9 64 64.1
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 4.3e-14 80.9 49 77.6
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 5.6e-14 80.5 66 62.1
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 7.3e-14 80.1 64 64.1
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.3e-13 79.3 68 55.9
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.3e-13 79.3 68 55.9
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 8.1e-13 76.6 68 57.4
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 4.0e-12 74.3 68 57.4
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 2.1e-08 62.0 37 83.8
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 2.7e-08 61.6 52 67.3
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 2.7e-08 61.6 41 73.2
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 7.9e-08 60.1 54 59.3
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.1e-07 57.4 37 78.4
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.1e-07 57.4 37 78.4
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.1e-07 57.4 37 78.4
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 8.7e-07 56.6 37 78.4
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 1.1e-06 56.2 46 60.9
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 1.1e-06 56.2 46 60.9


User provided reference genes

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