Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb279020 Zea mays HOM05D003305 ORTHO05D001298 4.7e-214 748.0 519 100.0
Os05g0597200 Oryza sativa ssp. japonica HOM05D003305 ORTHO05D001298 1.0e-19 102.4 90 64.4
SGA_v2.0_scaffold171G38920 Striga asiatica HOM05D003305 ORTHO05D001298 5.2e-11 73.6 178 32.6
SGA_v2.0_scaffold168G38497 Striga asiatica HOM05D003305 ORTHO05D001298 6.7e-11 73.2 81 46.9
Actinidia39846 Actinidia chinensis HOM05D003305 ORTHO05D001298 3.3e-10 70.9 82 47.6
vmacro17784 Vaccinium macrocarpon HOM05D003305 ORTHO05D001298 7.5e-10 69.7 84 45.2
MSTRG.9293 Avicennia marina HOM05D003305 ORTHO05D001298 9.7e-10 69.3 165 31.5
MD14G1235000 Malus domestica HOM05D003305 ORTHO05D001298 9.7e-10 69.3 125 36.8
Lsat_1_v5_gn_8_145000 Lactuca sativa HOM05D003305 ORTHO05D001298 1.3e-09 68.9 78 43.6
AT3G18035 Arabidopsis thaliana HOM05D003305 ORTHO05D001298 1.7e-09 68.6 89 41.6
Oeu046177.1 Olea europaea HOM05D003305 ORTHO05D001298 3.7e-09 67.4 131 34.4
Dinv10182 Davidia involucrata HOM05D003305 ORTHO05D001298 1.8e-08 65.1 101 42.6
Thecc.03G053100 Theobroma cacao HOM05D003305 ORTHO05D001298 1.8e-08 65.1 91 42.9
MSTRG.4568 Avicennia marina HOM05D003305 ORTHO05D001298 2.4e-08 64.7 149 32.9
CSS0006846 Camellia sinensis var. sinensis HOM05D003305 ORTHO05D001298 2.4e-08 64.7 85 43.5
Migut.D01563 Erythranthe guttata HOM05D003305 ORTHO05D001298 3.1e-08 64.3 82 46.3
TWI74G0359 Tripterygium wilfordii HOM05D002447 ORTHO05D001298 3.1e-08 64.3 81 42.0
Aa31LG10G5190 Aethionema arabicum HOM05D003305 ORTHO05D001298 4.1e-08 63.9 78 44.9
CiPaw.06G049000 Carya illinoinensis HOM05D002447 ORTHO05D001298 4.1e-08 63.9 95 44.2
ECA238G4031 Erigeron canadensis HOM05D003305 ORTHO05D001298 4.1e-08 63.9 67 46.3
HanXRQChr08g0221451 Helianthus annuus HOM05D003305 ORTHO05D001298 4.1e-08 63.9 75 44.0
MD06G1230400 Malus domestica HOM05D003305 ORTHO05D001298 5.3e-08 63.5 96 39.6
arahy.Tifrunner.gnm1.ann1.7X1Y1S Arachis hypogaea HOM05D002447 ORTHO05D001298 7.0e-08 63.2 81 40.7
A05p20990 Brassica napus HOM05D003305 ORTHO05D011756 7.0e-08 63.2 82 41.5
BraA05t21004Z Brassica rapa HOM05D003305 ORTHO05D011756 7.0e-08 63.2 82 41.5
COL.COLO4_31503 Corchorus olitorius HOM05D003305 ORTHO05D001298 7.0e-08 63.2 92 39.1
Eucgr.B02941 Eucalyptus grandis HOM05D002447 ORTHO05D001298 7.0e-08 63.2 81 43.2
SalBow5G2321 Salvia bowleyana HOM05D002447 ORTHO05D001298 7.0e-08 63.2 93 39.8
SalBow5G3153 Salvia bowleyana HOM05D002447 ORTHO05D001298 7.0e-08 63.2 93 39.8
HPP92_003549 Vanilla planifolia HOM05D003305 ORTHO05D001298 7.0e-08 63.2 98 37.8
Hma1.2p1_0346F.1_g131590 Hydrangea macrophylla HOM05D002447 ORTHO05D001298 9.1e-08 62.8 85 41.2
Lalb_Chr17g0346131 Lupinus albus HOM05D002447 ORTHO05D001298 9.1e-08 62.8 81 40.7
Prupe.5G231600 Prunus persica HOM05D003305 ORTHO05D001298 9.1e-08 62.8 79 44.3
Cfa019681 Carpinus fangiana HOM05D003305 ORTHO05D001298 1.2e-07 62.4 88 44.3
PGR083G2772 Punica granatum HOM05D003305 ORTHO05D001298 1.2e-07 62.4 81 39.5
AL3G31190 Arabidopsis lyrata HOM05D003305 ORTHO05D001298 1.6e-07 62.0 71 43.7
BcaB07g33727 Brassica carinata HOM05D003305 ORTHO05D001298 1.6e-07 62.0 71 43.7
BcaC05g27560 Brassica carinata HOM05D003305 ORTHO05D001298 1.6e-07 62.0 81 40.7
C05p35440 Brassica napus HOM05D003305 ORTHO05D001298 1.6e-07 62.0 81 40.7
BolC5t32256H Brassica oleracea HOM05D003305 ORTHO05D011756 1.6e-07 62.0 81 40.7
HanXRQChr08g0227291 Helianthus annuus HOM05D003305 ORTHO05D001298 2.0e-07 61.6 70 45.7
Nitab4.5_0010650g0010 Nicotiana tabacum HOM05D002447 ORTHO05D001298 2.0e-07 61.6 91 40.7
CANSAT56G3283 Cannabis sativa HOM05D003305 ORTHO05D001298 2.7e-07 61.2 78 42.3
CDE05G1637 Ceratophyllum demersum HOM05D002447 ORTHO05D001298 2.7e-07 61.2 81 39.5
Haze_18809 Corylus avellana HOM05D003305 ORTHO05D001298 2.7e-07 61.2 65 49.2
LjContig00141g0028216 Lotus japonicus HOM05D002447 ORTHO05D001298 2.7e-07 61.2 81 39.5
Lalb_Chr10g0104371 Lupinus albus HOM05D002447 ORTHO05D001298 2.7e-07 61.2 78 42.3
TWI77G0347 Tripterygium wilfordii HOM05D002447 ORTHO05D001298 2.7e-07 61.2 81 40.7
TAR622G1368 Trochodendron aralioides HOM05D002447 ORTHO05D001298 2.7e-07 61.2 81 40.7
Aa31LG8G4890 Aethionema arabicum HOM05D003305 ORTHO05D001298 3.5e-07 60.8 65 46.2
CSS0023887 Camellia sinensis var. sinensis HOM05D003305 ORTHO05D001298 3.5e-07 60.8 90 41.1
CSS0036038 Camellia sinensis var. sinensis HOM05D003305 ORTHO05D001298 3.5e-07 60.8 90 41.1
Dinv18258 Davidia involucrata HOM05D003305 ORTHO05D001298 3.5e-07 60.8 82 46.3
Eucgr.J01599 Eucalyptus grandis HOM05D002447 ORTHO05D001298 3.5e-07 60.8 80 41.2
Nitab4.5_0000916g0110 Nicotiana tabacum HOM05D002447 ORTHO05D001298 3.5e-07 60.8 91 39.6
Nitab4.5_0004028g0030 Nicotiana tabacum HOM05D003305 ORTHO05D001298 3.5e-07 60.8 82 42.7
unitig_746.g26886 Utricularia gibba HOM05D002447 ORTHO05D001298 3.5e-07 60.8 89 40.4
arahy.Tifrunner.gnm1.ann1.2Z77FC Arachis hypogaea HOM05D002447 ORTHO05D001298 4.5e-07 60.5 149 32.2
Nitab4.5_0001986g0050 Nicotiana tabacum HOM05D003305 ORTHO05D001298 4.5e-07 60.5 68 45.6
SalBow1G4743 Salvia bowleyana HOM05D003305 ORTHO05D001298 4.5e-07 60.5 83 44.6
Sp1g35590 Schrenkiella parvula HOM05D003305 ORTHO05D001298 4.5e-07 60.5 65 44.6
GSVIVG01008411001 Vitis vinifera HOM05D003305 ORTHO05D001298 4.5e-07 60.5 85 43.5
Ciclev10008667m.g Citrus clementina HOM05D003305 ORTHO05D001298 5.9e-07 60.1 99 39.4
Duzib251G0590 Durio zibethinus HOM05D003305 ORTHO05D001298 5.9e-07 60.1 84 40.5
Gohir.A12G161500 Gossypium hirsutum HOM05D003305 ORTHO05D001298 5.9e-07 60.1 74 40.5
Gohir.D12G164800 Gossypium hirsutum HOM05D003305 ORTHO05D001298 5.9e-07 60.1 74 40.5
Gorai.008G177600 Gossypium raimondii HOM05D003305 ORTHO05D001298 5.9e-07 60.1 74 40.5
Lsat_1_v5_gn_2_12280 Lactuca sativa HOM05D003305 ORTHO05D001298 5.9e-07 60.1 86 40.7
Solyc03g119130.3 Solanum lycopersicum HOM05D003305 ORTHO05D001298 5.9e-07 60.1 76 43.4
Sopen00g014070 Solanum pennellii HOM05D003305 ORTHO05D001298 5.9e-07 60.1 76 43.4
Sopen03g038020 Solanum pennellii HOM05D003305 ORTHO05D001298 5.9e-07 60.1 76 43.4
THA.LOC104824134 Tarenaya hassleriana HOM05D002447 ORTHO05D001298 5.9e-07 60.1 81 42.0
TPR.G8262 Trifolium pratense HOM05D002447 ORTHO05D001298 5.9e-07 60.1 81 38.3
Zm00001eb179440 Zea mays HOM05D002447 ORTHO05D001298 5.9e-07 60.1 95 41.1
Cpa.g.sc844.1 Carica papaya HOM05D002447 ORTHO05D001298 7.7e-07 59.7 81 40.7
CiPaw.16G091800 Carya illinoinensis HOM05D003305 ORTHO05D001298 7.7e-07 59.7 75 42.7
PSO478G1517 Papaver somniferum HOM05D003305 ORTHO05D001298 7.7e-07 59.7 81 38.3
RcHm_v2.0_Chr7g0178581 Rosa chinensis HOM05D003305 ORTHO05D001298 7.7e-07 59.7 81 43.2
PGSC0003DMG400005735 Solanum tuberosum HOM05D003305 ORTHO05D001298 7.7e-07 59.7 75 44.0
unitig_899.g15632 Utricularia gibba HOM05D002447 ORTHO05D001298 7.7e-07 59.7 95 37.9
AL1G55280 Arabidopsis lyrata HOM05D003305 ORTHO05D001298 1.0e-06 59.3 75 40.0
BcaC08g43068 Brassica carinata HOM05D003305 ORTHO05D001298 1.0e-06 59.3 71 40.8
C06p03260 Brassica napus HOM05D003305 ORTHO05D001298 1.0e-06 59.3 71 40.8
BolC6t35458H Brassica oleracea HOM05D003305 ORTHO05D001298 1.0e-06 59.3 71 40.8
CARHR093350 Cardamine hirsuta HOM05D003305 ORTHO05D001298 1.0e-06 59.3 73 43.8
CDE11G0143 Ceratophyllum demersum HOM05D002447 ORTHO05D001298 1.0e-06 59.3 81 38.3
FvH4_5g17210 Fragaria vesca HOM05D003305 ORTHO05D001298 1.0e-06 59.3 80 43.8
FAN18G3362 Fragaria x ananassa HOM05D003305 ORTHO05D001298 1.0e-06 59.3 80 43.8
Sabra15G0056800 Salix brachista HOM05D003305 ORTHO05D001298 1.0e-06 59.3 73 45.2
Sabra15G0068400 Salix brachista HOM05D003305 ORTHO05D001298 1.0e-06 59.3 73 45.2
CARHR038230 Cardamine hirsuta HOM05D003305 ORTHO05D001298 1.3e-06 58.9 65 43.1
Nn4g24189 Nelumbo nucifera HOM05D003305 ORTHO05D001298 1.3e-06 58.9 95 38.9
Oeu026293.1 Olea europaea HOM05D003305 ORTHO05D001298 1.3e-06 58.9 83 41.0
PSO017G4429 Papaver somniferum HOM05D003305 ORTHO05D001298 1.3e-06 58.9 85 36.5
Aqoxy3G00110 Aquilegia oxysepala HOM05D003305 ORTHO05D001298 1.7e-06 58.5 77 41.6
AT1G48620 Arabidopsis thaliana HOM05D003305 ORTHO05D001298 1.7e-06 58.5 75 40.0
Ca_05824_v3 Cicer arietinum L. HOM05D002447 ORTHO05D001298 1.7e-06 58.5 81 39.5
Thhalv10011410m.g Eutrema salsugineum HOM05D003305 ORTHO05D001298 1.7e-06 58.5 101 35.6
A06p04300 Brassica napus HOM05D003305 ORTHO05D001298 2.2e-06 58.2 79 39.2
BraA06t23634Z Brassica rapa HOM05D003305 ORTHO05D001298 2.2e-06 58.2 79 39.2
Cc07_g13500 Coffea canephora HOM05D002447 ORTHO05D001298 2.2e-06 58.2 119 31.9
Manes.09G031800 Manihot esculenta HOM05D003305 ORTHO05D001298 2.2e-06 58.2 82 40.2
Potri.015G040200 Populus trichocarpa HOM05D003305 ORTHO05D001298 2.2e-06 58.2 73 43.8
TPR.G24921 Trifolium pratense HOM05D002447 ORTHO05D001298 2.2e-06 58.2 78 39.7
Zm00001eb073400 Zea mays HOM05D001085 ORTHO05D000895 2.2e-06 58.2 88 37.5
arahy.Tifrunner.gnm1.ann1.H8H77X Arachis hypogaea HOM05D002447 ORTHO05D001298 2.9e-06 57.8 92 33.7
Duzib248G0796 Durio zibethinus HOM05D003305 ORTHO05D001298 2.9e-06 57.8 97 35.1
Lj5A155T96 Lonicera japonica HOM05D003305 ORTHO05D001298 2.9e-06 57.8 89 39.3
Medtr5g078330 Medicago truncatula HOM05D002447 ORTHO05D001298 2.9e-06 57.8 81 37.0
Os04g0253000 Oryza sativa ssp. japonica HOM05D001085 ORTHO05D000895 2.9e-06 57.8 96 38.5
PGSC0003DMG400001127 Solanum tuberosum HOM05D001085 ORTHO05D000895 2.9e-06 57.8 87 41.4
THA.LOC104821833 Tarenaya hassleriana HOM05D003305 ORTHO05D001298 2.9e-06 57.8 85 42.4
Actinidia28809 Actinidia chinensis HOM05D002447 ORTHO05D001298 3.8e-06 57.4 78 41.0
Duzib268G1509 Durio zibethinus HOM05D003305 ORTHO05D001298 3.8e-06 57.4 91 37.4
FAN13G3137 Fragaria x ananassa HOM05D003305 ORTHO05D001298 3.8e-06 57.4 80 42.5
MBI12_g17286_MAGBIO Magnolia biondii HOM05D002447 ORTHO05D001298 3.8e-06 57.4 75 40.0
Potri.012G048500 Populus trichocarpa HOM05D003305 ORTHO05D001298 3.8e-06 57.4 81 42.0
Sabra12G0034100 Salix brachista HOM05D003305 ORTHO05D001298 3.8e-06 57.4 99 39.4
Sc12g0007140 Simmondsia chinensis HOM05D003305 ORTHO05D001298 3.8e-06 57.4 106 34.9
Cc04_g06460 Coffea canephora HOM05D003305 ORTHO05D001298 5.0e-06 57.0 82 42.7
FAN04G1779 Fragaria x ananassa HOM05D003305 ORTHO05D001298 5.0e-06 57.0 80 42.5
Gorai.012G185800 Gossypium raimondii HOM05D003305 ORTHO05D001298 5.0e-06 57.0 81 39.5
Nitab4.5_0000525g0190 Nicotiana tabacum HOM05D001085 ORTHO05D000895 5.0e-06 57.0 90 35.6
Nitab4.5_0004798g0020 Nicotiana tabacum HOM05D001085 ORTHO05D000895 5.0e-06 57.0 90 35.6
PGR004G0693 Punica granatum HOM05D002447 ORTHO05D001298 5.0e-06 57.0 95 37.9
Rhsim08G0132500 Rhododendron simsii HOM05D003305 ORTHO05D001298 5.0e-06 57.0 59 49.2
MSTRG.7614 Avicennia marina HOM05D002447 ORTHO05D001298 6.5e-06 56.6 90 37.8
Ca_17104_v3 Cicer arietinum L. HOM05D002447 ORTHO05D001298 6.5e-06 56.6 78 38.5
Ca_30890_v3 Cicer arietinum L. HOM05D002447 ORTHO05D001298 6.5e-06 56.6 78 38.5
FAN08G2597 Fragaria x ananassa HOM05D003305 ORTHO05D001298 6.5e-06 56.6 80 41.2
Gohir.D07G083000 Gossypium hirsutum HOM05D002447 ORTHO05D001298 6.5e-06 56.6 81 34.6
Medtr3g065570 Medicago truncatula HOM05D002447 ORTHO05D001298 6.5e-06 56.6 78 37.2
Migut.L00405 Erythranthe guttata HOM05D002447 ORTHO05D001298 8.5e-06 56.2 88 37.5
Gohir.A07G078200 Gossypium hirsutum HOM05D002447 ORTHO05D001298 8.5e-06 56.2 81 34.6
Gorai.001G088600 Gossypium raimondii HOM05D002447 ORTHO05D001298 8.5e-06 56.2 81 34.6
Oeu002131.1 Olea europaea HOM05D002447 ORTHO05D001298 8.5e-06 56.2 78 34.6
Oeu031139.1 Olea europaea HOM05D002447 ORTHO05D001298 8.5e-06 56.2 78 37.2
RcHm_v2.0_Chr1g0337641 Rosa chinensis HOM05D003305 ORTHO05D001298 8.5e-06 56.2 79 43.0
SGA_v2.0_scaffold50G18469 Striga asiatica HOM05D002447 ORTHO05D001298 8.5e-06 56.2 78 39.7


User provided reference genes

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