Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 1.0e-60 236.5 116 100.0
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 5.5e-22 107.8 57 87.7
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.6e-21 106.3 57 86.0
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 1.2e-19 100.1 61 70.5
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 1.5e-19 99.8 57 77.2
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 4.4e-19 98.2 59 74.6
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 4.4e-19 98.2 59 76.3
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 7.5e-19 97.4 58 72.4
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 7.5e-19 97.4 57 73.7
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 9.7e-19 97.1 57 73.7
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 1.7e-18 96.3 57 75.4
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 2.2e-18 95.9 57 73.7
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 2.8e-18 95.5 57 71.9
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 2.8e-18 95.5 57 71.9
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 2.8e-18 95.5 59 69.5
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 2.8e-18 95.5 59 71.2
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 3.7e-18 95.1 58 72.4
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 3.7e-18 95.1 57 73.7
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 3.7e-18 95.1 60 66.7
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 3.7e-18 95.1 57 73.7
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 3.7e-18 95.1 57 71.9
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 4.8e-18 94.7 59 71.2
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 4.8e-18 94.7 59 71.2
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 4.8e-18 94.7 59 74.6
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 4.8e-18 94.7 67 64.2
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 6.3e-18 94.4 57 73.7
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 6.3e-18 94.4 58 75.9
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 6.3e-18 94.4 57 70.2
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 8.3e-18 94.0 57 71.9
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 8.3e-18 94.0 130 46.2
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 1.1e-17 93.6 59 67.8
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 1.1e-17 93.6 57 71.9
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 1.1e-17 93.6 57 73.7
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 1.4e-17 93.2 57 75.4
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 1.8e-17 92.8 57 68.4
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 2.4e-17 92.4 57 68.4
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 2.4e-17 92.4 57 68.4
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 2.4e-17 92.4 57 70.2
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 3.1e-17 92.0 57 73.7
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 3.1e-17 92.0 57 73.7
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 3.1e-17 92.0 57 73.7
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 3.1e-17 92.0 57 70.2
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 3.1e-17 92.0 57 70.2
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 4.1e-17 91.7 57 70.2
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 4.1e-17 91.7 57 66.7
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 4.1e-17 91.7 59 71.2
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 4.1e-17 91.7 59 71.2
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 4.1e-17 91.7 57 70.2
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 5.3e-17 91.3 57 71.9
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 5.3e-17 91.3 57 68.4
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 9.1e-17 90.5 57 68.4
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 9.1e-17 90.5 57 66.7
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 9.1e-17 90.5 59 67.8
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 1.6e-16 89.7 57 64.9
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 2.7e-16 89.0 57 68.4
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 2.7e-16 89.0 57 66.7
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 3.5e-16 88.6 56 75.0
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 3.5e-16 88.6 54 74.1
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 4.5e-16 88.2 57 68.4
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 4.5e-16 88.2 59 64.4
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 4.5e-16 88.2 59 66.1
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 4.5e-16 88.2 57 64.9
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 5.9e-16 87.8 57 68.4
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 5.9e-16 87.8 57 68.4
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 5.9e-16 87.8 59 62.7
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 5.9e-16 87.8 57 66.7
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 7.7e-16 87.4 59 62.7
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 7.7e-16 87.4 59 62.7
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 1.0e-15 87.0 57 64.9
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 1.3e-15 86.7 57 64.9
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 1.7e-15 86.3 59 61.0
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 2.2e-15 85.9 59 62.7
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 2.9e-15 85.5 58 62.1
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 2.9e-15 85.5 59 64.4
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 3.8e-15 85.1 57 64.9
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 3.8e-15 85.1 58 63.8
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 5.0e-15 84.7 60 65.0
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 5.0e-15 84.7 57 63.2
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 1.1e-14 83.6 57 59.6
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 1.1e-14 83.6 59 59.3
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 1.9e-14 82.8 57 61.4
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 1.9e-14 82.8 57 61.4
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 1.9e-14 82.8 57 61.4
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 1.9e-14 82.8 57 61.4
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 2.5e-14 82.4 83 50.6
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 2.5e-14 82.4 57 63.2
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 3.2e-14 82.0 55 61.8
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 3.2e-14 82.0 54 63.0
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 5.5e-14 81.3 57 68.4
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 5.5e-14 81.3 57 59.6
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 5.5e-14 81.3 57 59.6
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 7.2e-14 80.9 52 69.2
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 7.2e-14 80.9 57 61.4
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 7.2e-14 80.9 58 62.1
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.6e-13 79.7 57 61.4
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 2.1e-13 79.3 57 57.9
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 3.6e-13 78.6 57 59.6
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 3.6e-13 78.6 57 59.6
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 1.4e-12 76.6 59 61.0
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 1.4e-12 76.6 59 55.9
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 2.3e-12 75.9 59 54.2
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 2.3e-12 75.9 59 54.2
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 6.8e-12 74.3 56 55.4
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.2e-11 73.6 57 57.9
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.2e-11 73.6 57 57.9
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 4.4e-11 71.6 38 86.8
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 7.5e-11 70.9 56 55.4
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 7.5e-11 70.9 48 64.6
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 2.2e-10 69.3 57 57.9
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 4.8e-10 68.2 58 58.6
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 6.3e-10 67.8 58 55.2
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.1e-09 67.0 59 55.9
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 2.4e-09 65.9 60 55.0
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 5.4e-09 64.7 59 44.1
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 1.6e-08 63.2 59 52.5


User provided reference genes

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