Gene: PGSC0003DMG400003953

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400003953
  • Transcript Identifier PGSC0003DMT400010092
  • Gene Type Coding gene
  • Location ST4.03ch08 : 53312247-53312608 : positive

Gene Family Information

  • ID HOM05D007086
  • #Genes/#Species 112/75
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37468907
  • id PGSC0003DMG400003953.v4.03
  • uniprot M0ZXG6

Descriptions

  • Description REX1 DNA Repair family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IEA
GOA Databasenucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006367
IEA
GOA Databasetranscription initiation from RNA polymerase II promoter
GO:0006367
IEA
InterProtranscription initiation from RNA polymerase II promoter
GO:0070816
IBA
GOA Databasephosphorylation of RNA polymerase II C-terminal domain
GO:0006294
IBA
GOA Databasenucleotide-excision repair, preincision complex assembly
GO:0006366
IBA
GOA Databasetranscription by RNA polymerase II

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000439
IBA
IEA
GOA Databasetranscription factor TFIIH core complex
GO:0000439
IEA
InterProtranscription factor TFIIH core complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005675
IBA
GOA Databasetranscription factor TFIIH holo complex
GO:0005669
IBA
GOA Databasetranscription factor TFIID complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009400 TFIIH subunit TTDA/Tfb5
IPR035935 TFB5-like superfamily
Mapman id Description
14.6.3.2.7 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit TFB5
15.3.3.5.1.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB5