Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 0.0e+00 1117.8 583 100.0
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.2e-226 790.0 456 88.8
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 6.7e-225 784.3 595 72.9
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 7.8e-149 531.6 605 51.4
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.0e-148 531.2 600 50.3
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 6.6e-148 528.5 623 49.1
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.5e-147 527.3 569 51.5
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 4.3e-147 525.8 599 50.6
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 7.3e-147 525.0 564 51.8
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 2.8e-146 523.1 573 51.7
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.8e-146 523.1 618 50.8
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 4.7e-146 522.3 566 49.3
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 4.7e-146 522.3 614 50.2
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 8.1e-146 521.5 631 49.0
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 8.1e-146 521.5 573 51.8
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.4e-145 520.8 590 50.0
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.4e-145 520.8 631 48.3
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 5.2e-145 518.8 609 49.8
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 5.2e-145 518.8 640 47.7
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 5.2e-145 518.8 634 49.7
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 8.9e-145 518.1 544 50.6
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.5e-144 517.3 612 48.4
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.6e-144 516.5 604 48.5
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 3.4e-144 516.2 603 48.9
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 4.4e-144 515.8 624 48.1
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 5.8e-144 515.4 631 48.7
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 9.8e-144 514.6 614 48.0
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-143 514.2 606 49.2
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.3e-143 514.2 611 49.9
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 2.2e-143 513.5 629 48.3
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 2.9e-143 513.1 579 49.6
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.9e-143 513.1 611 49.9
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 8.3e-143 511.5 625 48.2
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-142 510.8 604 48.8
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 2.4e-142 510.0 581 48.9
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 3.2e-142 509.6 633 48.3
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.1e-142 509.2 604 48.8
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 7.1e-142 508.4 636 47.8
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 7.1e-142 508.4 580 50.3
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 7.1e-142 508.4 606 47.5
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.2e-142 508.1 604 48.7
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.6e-141 507.3 628 47.8
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.6e-141 507.3 590 49.0
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 2.1e-141 506.9 592 48.5
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 2.1e-141 506.9 554 51.1
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 2.1e-141 506.9 621 47.8
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.7e-141 506.5 629 46.4
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 2.7e-141 506.5 604 48.8
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 2.7e-141 506.5 601 48.8
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 3.5e-141 506.1 595 47.9
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 6.0e-141 505.4 582 49.5
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 7.8e-141 505.0 596 49.3
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.7e-140 503.8 584 50.9
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.7e-140 503.8 611 48.1
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.7e-140 503.8 591 49.6
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 3.0e-140 503.1 577 49.9
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.0e-140 503.1 571 49.4
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.1e-139 501.1 620 46.9
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.9e-139 500.4 619 48.0
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.5e-139 500.0 582 47.9
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 3.3e-139 499.6 594 49.7
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 4.3e-139 499.2 588 48.8
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 5.6e-139 498.8 595 47.1
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 9.5e-139 498.0 593 49.1
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 9.5e-139 498.0 590 49.5
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 9.5e-139 498.0 590 49.5
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.2e-138 497.7 608 48.4
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-138 497.3 571 49.6
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.6e-138 497.3 606 48.2
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.1e-138 496.9 631 47.5
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 2.8e-138 496.5 595 48.2
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.6e-138 496.1 582 47.6
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.6e-138 496.1 617 47.0
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 4.7e-138 495.7 595 47.7
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 6.2e-138 495.4 589 47.5
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.8e-137 493.8 595 49.1
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.8e-137 493.8 555 50.1
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.3e-137 493.4 602 47.2
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 2.3e-137 493.4 597 47.6
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 2.3e-137 493.4 583 47.7
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 6.8e-137 491.9 564 50.5
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 8.9e-137 491.5 606 47.0
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.5e-136 490.7 573 49.7
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 3.4e-136 489.6 573 49.7
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 3.4e-136 489.6 573 49.7
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 3.4e-136 489.6 593 46.9
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 5.8e-136 488.8 560 47.7
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 5.8e-136 488.8 609 47.0
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.3e-135 487.6 590 47.6
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 1.7e-135 487.3 575 49.9
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.7e-135 487.3 575 49.9
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 2.2e-135 486.9 606 46.5
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 2.9e-135 486.5 582 47.6
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 2.9e-135 486.5 577 48.2
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 4.9e-135 485.7 604 46.4
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 8.4e-135 485.0 599 46.1
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.4e-134 484.2 629 45.3
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.4e-134 483.4 628 45.5
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 5.4e-134 482.3 593 47.9
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 7.1e-134 481.9 608 47.2
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.6e-133 480.7 581 48.0
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 7.8e-133 478.4 630 45.2
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 7.8e-133 478.4 627 44.5
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.3e-131 472.6 546 48.7
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.4e-129 466.8 630 44.8
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 6.2e-122 442.2 564 47.5
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 6.2e-122 442.2 572 47.2
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 6.2e-122 442.2 536 46.8
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 8.1e-122 441.8 510 48.8
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 7.1e-118 428.7 500 48.8
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.2e-112 411.4 633 39.0
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.6e-109 401.0 555 45.4
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.7e-109 400.2 614 42.8
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 2.0e-104 384.0 499 46.7
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 8.4e-103 378.6 548 44.5
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 2.5e-99 367.1 514 43.6
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 2.2e-95 354.0 478 43.7
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 5.1e-92 342.8 656 38.1
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.8e-90 337.0 355 51.8
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 3.8e-87 326.6 557 39.7
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 2.7e-85 320.5 623 35.6
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 7.9e-85 318.9 382 50.3
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.1e-83 315.1 260 61.5
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.7e-82 311.2 417 45.8
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.7e-74 284.6 445 40.0
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 2.8e-74 283.9 233 60.5
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 6.5e-71 272.7 393 42.5
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 5.7e-67 259.6 545 36.0
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.1e-65 255.4 507 36.7
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 2.7e-61 240.7 778 27.8
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.8e-55 220.3 403 38.5
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 3.2e-54 217.2 148 68.9
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 5.4e-49 199.9 553 32.4
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.2e-48 198.7 184 54.9
Zm00001eb026410 Zea mays HOM05D004635 ORTHO05D005899 2.0e-48 198.0 144 76.4
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 1.7e-47 194.9 526 31.2
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 2.9e-47 194.1 234 47.0
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-46 192.2 350 37.7
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.9e-46 191.4 361 37.4
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.0e-39 169.1 607 29.7
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.7e-34 151.8 126 56.3
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 6.6e-31 139.8 249 36.9
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 3.3e-30 137.5 249 36.1
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 4.3e-30 137.1 130 52.3
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 3.6e-29 134.0 249 36.9
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 6.4e-26 123.2 319 32.0
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 5.2e-20 103.6 164 35.4
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 1.5e-19 102.1 96 57.3
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 7.1e-17 93.2 60 66.7
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 9.6e-14 82.8 188 38.3
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 3.1e-12 77.8 195 30.8
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 2.1e-08 65.1 112 44.6
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 5.1e-07 60.5 50 58.0


User provided reference genes

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