Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 4.5e-96 354.8 202 100.0
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 7.5e-83 310.8 203 88.2
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 7.0e-73 277.7 201 80.6
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 1.6e-72 276.6 201 80.6
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.0e-71 273.9 201 79.6
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 2.3e-71 272.7 202 81.2
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 2.9e-71 272.3 201 79.1
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 3.9e-71 271.9 201 80.1
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 5.0e-71 271.6 199 81.4
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 6.6e-71 271.2 201 80.6
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 8.6e-71 270.8 201 80.1
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 8.6e-71 270.8 202 79.2
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.1e-70 270.4 201 80.1
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.1e-70 270.4 201 80.1
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.5e-70 270.0 201 80.6
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 2.5e-70 269.2 201 79.6
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 5.6e-70 268.1 200 78.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 9.5e-70 267.3 201 79.1
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 9.5e-70 267.3 203 80.3
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.6e-69 266.5 201 78.6
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 2.1e-69 266.2 201 77.1
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 2.1e-69 266.2 201 78.1
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 3.6e-69 265.4 201 77.6
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 3.6e-69 265.4 203 79.3
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 4.7e-69 265.0 201 77.6
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 8.0e-69 264.2 201 77.1
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 8.0e-69 264.2 202 78.2
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 8.0e-69 264.2 201 77.1
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.0e-68 263.8 202 78.7
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 2.3e-68 262.7 196 78.6
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 3.1e-68 262.3 201 78.1
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.1e-68 262.3 201 77.6
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 3.1e-68 262.3 201 77.6
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 3.1e-68 262.3 201 78.1
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 3.1e-68 262.3 201 78.1
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 3.1e-68 262.3 196 77.6
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 5.2e-68 261.5 199 78.4
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 6.8e-68 261.2 203 78.3
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 6.8e-68 261.2 201 77.6
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 8.9e-68 260.8 199 78.9
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.2e-67 260.4 197 78.7
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.5e-67 260.0 202 76.2
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 2.0e-67 259.6 201 77.1
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 2.0e-67 259.6 196 77.0
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.0e-67 259.6 210 75.7
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 2.0e-67 259.6 201 78.6
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.6e-67 259.2 210 75.7
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 4.4e-67 258.5 202 76.2
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 5.8e-67 258.1 201 79.1
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.8e-67 258.1 210 75.2
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 7.5e-67 257.7 202 75.7
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 7.5e-67 257.7 200 78.0
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 9.8e-67 257.3 202 76.7
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 9.8e-67 257.3 240 68.3
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 1.3e-66 256.9 196 80.1
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.7e-66 256.5 200 78.0
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.2e-66 256.1 201 77.1
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.9e-66 255.8 201 77.1
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 3.7e-66 255.4 202 76.7
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 6.4e-66 254.6 201 77.1
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 6.4e-66 254.6 201 77.1
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 6.4e-66 254.6 199 78.4
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 8.3e-66 254.2 200 76.0
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 8.3e-66 254.2 201 75.1
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.1e-65 253.8 200 77.5
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 1.1e-65 253.8 195 75.9
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.4e-65 253.4 200 75.0
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.4e-65 253.4 200 77.5
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 4.1e-65 251.9 200 74.5
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 4.1e-65 251.9 199 77.9
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 5.4e-65 251.5 197 77.7
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 7.0e-65 251.1 195 77.4
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 7.0e-65 251.1 200 76.5
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.2e-64 250.4 201 75.6
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 1.6e-64 250.0 202 77.2
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.0e-64 249.6 200 76.5
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.7e-64 249.2 200 73.5
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 2.7e-64 249.2 199 75.9
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 6.0e-64 248.1 201 74.6
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 7.8e-64 247.7 201 76.6
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.0e-63 247.3 200 73.5
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.3e-63 246.9 196 76.0
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 1.7e-63 246.5 196 75.5
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 5.0e-63 245.0 196 78.1
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 5.0e-63 245.0 195 76.4
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 5.0e-63 245.0 196 75.5
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 6.6e-63 244.6 202 70.3
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 8.6e-63 244.2 200 74.5
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.1e-62 243.8 197 75.6
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 2.5e-62 242.7 200 75.5
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.5e-62 242.7 200 74.5
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 3.3e-62 242.3 204 73.5
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 7.3e-62 241.1 200 73.0
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.6e-61 240.0 200 73.0
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.1e-61 239.6 201 73.6
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 3.6e-61 238.8 195 73.8
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 4.7e-61 238.4 200 72.5
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.7e-61 238.4 153 79.7
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 2.3e-60 236.1 195 72.8
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 4.0e-60 235.3 171 81.3
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 2.0e-59 233.0 201 71.6
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 2.9e-58 229.2 152 76.3
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.7e-58 228.8 161 84.5
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 7.1e-57 224.6 200 72.0
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 6.6e-55 218.0 211 58.3
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 6.6e-55 218.0 267 56.6
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 9.5e-54 214.2 197 70.6
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.4e-52 210.3 147 72.1
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.3e-50 203.8 295 51.2
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.9e-50 202.6 143 71.3
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 3.7e-50 202.2 202 59.9
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 4.9e-50 201.8 204 59.3
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 5.4e-49 198.4 200 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 7.1e-49 198.0 139 73.4
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.3e-47 193.0 201 63.2
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.5e-46 190.3 193 66.3
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 5.6e-46 188.3 111 82.0
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.1e-44 184.1 150 75.3
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 1.9e-41 173.3 221 59.7
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.1e-40 169.9 148 66.2
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 9.6e-38 161.0 137 63.5
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.3e-37 160.6 124 80.6
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 4.8e-37 158.7 213 49.3
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.9e-34 148.7 123 67.5
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 9.3e-33 144.4 226 48.2
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.7e-32 142.9 210 55.2
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 6.0e-32 141.7 203 44.8
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 5.6e-30 135.2 96 95.8
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 4.0e-28 129.0 91 97.8
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 9.9e-27 124.4 282 43.6
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 2.7e-24 116.3 218 45.0
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.4e-20 104.0 130 48.5
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 4.2e-17 92.4 205 39.0
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 1.8e-15 87.0 46 100.0
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.0e-07 61.2 161 27.3


User provided reference genes

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