Gene: SGA_v2.0_scaffold80G25879

General Information

Structural Information

Species Striga asiatica
Gene Identifier SGA_v2.0_scaffold80G25879
Transcript Identifier SGA_v2.0_scaffold80T25879
Gene Type Coding gene
Location scaffold80 : 1155264-1159956 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D005935
#Genes/#Species 132/95
Phylogenetic origin

ID ORTHO05D007012
#Genes/#Species 135/98
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

Descriptions

Short descriptions
Ortholog descriptions

product C2H2 and C2HC zinc fingers superfamily protein

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000398	IEA	InterPro	mRNA splicing, via spliceosome

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0008270	IEA	InterPro	zinc ion binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005681	IEA	InterPro	spliceosomal complex

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger
IPR040107	U4/U6.U5 small nuclear ribonucleoprotein component Snu23
IPR036236	Zinc finger C2H2 superfamily
IPR022755	Zinc finger, double-stranded RNA binding

Mapman id	Description
16.2.1.5.2	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (SNU23)