Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 2.8e-29 131.7 91 100.0
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 1.8e-28 129.0 91 97.8
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 2.2e-26 122.1 91 95.6
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 1.1e-20 103.2 92 83.7
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 6.9e-20 100.5 91 82.4
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 2.0e-19 99.0 91 80.2
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 5.9e-19 97.4 91 72.5
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.0e-18 96.7 91 79.1
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.7e-18 95.9 90 77.8
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 3.8e-18 94.7 90 77.8
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 3.8e-18 94.7 90 77.8
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 5.0e-18 94.4 91 79.1
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 6.5e-18 94.0 91 80.2
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 6.5e-18 94.0 91 80.2
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 6.5e-18 94.0 91 80.2
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 6.5e-18 94.0 89 77.5
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 8.5e-18 93.6 91 79.1
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 8.5e-18 93.6 91 79.1
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.1e-17 93.2 91 78.0
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.1e-17 93.2 91 76.9
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 1.4e-17 92.8 91 79.1
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.4e-17 92.8 91 80.2
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 2.5e-17 92.0 91 78.0
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 3.2e-17 91.7 90 74.4
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 3.2e-17 91.7 91 75.8
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 3.2e-17 91.7 91 80.2
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 3.2e-17 91.7 91 78.0
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 3.2e-17 91.7 91 75.8
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 4.2e-17 91.3 90 80.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 5.5e-17 90.9 91 75.8
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 5.5e-17 90.9 91 75.8
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 5.5e-17 90.9 91 75.8
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 7.2e-17 90.5 91 75.8
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 7.2e-17 90.5 91 76.9
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 9.3e-17 90.1 91 78.0
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 9.3e-17 90.1 91 76.9
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.2e-16 89.7 91 72.5
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.2e-16 89.7 91 76.9
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.2e-16 89.7 91 78.0
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.2e-16 89.7 91 76.9
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.2e-16 89.7 91 76.9
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.2e-16 89.7 91 78.0
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.6e-16 89.4 90 76.7
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.6e-16 89.4 91 75.8
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.6e-16 89.4 90 74.4
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.1e-16 89.0 90 76.7
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.1e-16 89.0 91 75.8
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 2.1e-16 89.0 90 77.8
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.7e-16 88.6 91 78.0
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 2.7e-16 88.6 91 76.9
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 2.7e-16 88.6 91 76.9
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.6e-16 88.2 91 75.8
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 3.6e-16 88.2 91 62.6
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 4.6e-16 87.8 91 75.8
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 4.6e-16 87.8 91 75.8
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.6e-16 87.8 91 78.0
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 4.6e-16 87.8 91 75.8
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.6e-16 87.8 91 75.8
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 4.6e-16 87.8 90 76.7
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 4.6e-16 87.8 91 76.9
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 6.1e-16 87.4 91 74.7
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 6.1e-16 87.4 91 76.9
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 6.1e-16 87.4 90 75.6
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 6.1e-16 87.4 91 75.8
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 7.9e-16 87.0 91 74.7
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 7.9e-16 87.0 90 73.3
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 7.9e-16 87.0 91 75.8
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.0e-15 86.7 91 74.7
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.0e-15 86.7 90 75.6
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.4e-15 86.3 91 75.8
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.4e-15 86.3 91 75.8
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 1.8e-15 85.9 90 74.4
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.8e-15 85.9 90 74.4
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 1.8e-15 85.9 91 74.7
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.3e-15 85.5 92 72.8
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 3.0e-15 85.1 90 74.4
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 3.0e-15 85.1 91 72.5
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 3.0e-15 85.1 90 74.4
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 3.0e-15 85.1 90 73.3
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 3.0e-15 85.1 91 74.7
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 3.9e-15 84.7 91 73.6
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 5.1e-15 84.3 90 73.3
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 5.1e-15 84.3 90 72.2
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 6.7e-15 84.0 91 73.6
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 6.7e-15 84.0 91 73.6
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 6.7e-15 84.0 90 72.2
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 1.1e-14 83.2 91 72.5
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.5e-14 82.8 91 73.6
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.5e-14 82.8 90 74.4
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.5e-14 82.8 92 71.7
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 1.9e-14 82.4 91 74.7
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.9e-14 82.4 91 72.5
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 3.3e-14 81.6 91 70.3
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 3.3e-14 81.6 91 74.7
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 3.3e-14 81.6 91 71.4
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 4.3e-14 81.3 91 72.5
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 5.7e-14 80.9 91 75.8
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 5.7e-14 80.9 90 72.2
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 9.7e-14 80.1 91 71.4
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 9.7e-14 80.1 90 72.2
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 9.7e-14 80.1 90 68.9
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.3e-13 79.7 90 73.3
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 2.2e-13 79.0 87 73.6
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 3.7e-13 78.2 91 74.7
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 6.3e-13 77.4 92 68.5
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 6.3e-13 77.4 41 100.0
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 8.2e-13 77.0 91 73.6
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 1.8e-12 75.9 113 61.1
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 2.4e-12 75.5 85 69.4
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 6.9e-12 73.9 91 69.2
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.2e-11 73.2 87 73.6
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.4e-11 71.6 79 73.4
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 3.8e-10 68.2 90 46.7
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.0e-10 67.8 83 69.9
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.2e-08 63.2 42 76.2
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.6e-08 62.8 86 65.1
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.1e-08 60.8 42 78.6
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.7e-06 54.3 84 69.0
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 7.4e-06 53.9 97 52.6


User provided reference genes

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