Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb109210 Zea mays HOM05D003451 ORTHO05D003918 3.4e-39 164.5 79 100.0
Zm00001eb207160 Zea mays HOM05D003451 ORTHO05D003918 3.4e-39 164.5 79 100.0
Zm00001eb267400 Zea mays HOM05D001283 ORTHO05D001109 3.6e-25 117.9 64 89.1
Zm00001eb417640 Zea mays HOM05D003451 ORTHO05D003918 3.4e-23 111.3 66 84.8
Os05g0140500 Oryza sativa ssp. japonica HOM05D003451 ORTHO05D003918 4.5e-15 84.3 66 68.2
SEGI_06162 Sequoiadendron giganteum HOM05D003451 ORTHO05D003918 3.2e-13 78.2 75 54.7
Lj2A624G28 Lonicera japonica HOM05D003451 ORTHO05D003918 9.3e-13 76.6 63 61.9
Lj5C793G3 Lonicera japonica HOM05D003451 ORTHO05D003918 9.3e-13 76.6 63 61.9
HPP92_003156 Vanilla planifolia HOM05D003451 ORTHO05D003918 9.3e-13 76.6 65 60.0
CSS0013826 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.6e-12 75.9 63 60.3
Migut.N02344 Erythranthe guttata HOM05D003451 ORTHO05D003918 2.7e-12 75.1 63 58.7
PSO541G4141 Papaver somniferum HOM05D003451 ORTHO05D003918 3.5e-12 74.7 63 58.7
PSO675G7264 Papaver somniferum HOM05D003451 ORTHO05D003918 3.5e-12 74.7 63 58.7
Actinidia11670 Actinidia chinensis HOM05D003451 ORTHO05D003918 6.0e-12 73.9 63 58.7
Hma1.2p1_0390F.1_g142550 Hydrangea macrophylla HOM05D003451 ORTHO05D003918 7.9e-12 73.6 63 58.7
PSO384G4628 Papaver somniferum HOM05D003451 ORTHO05D003918 7.9e-12 73.6 63 57.1
EL10Ac4g10211 Beta vulgaris HOM05D003451 ORTHO05D003918 1.0e-11 73.2 63 57.1
DCAR_019964 Daucus carota HOM05D003451 ORTHO05D003918 1.0e-11 73.2 63 57.1
PSO339G2767 Papaver somniferum HOM05D003451 ORTHO05D003918 1.0e-11 73.2 63 57.1
Nn2g15160 Nelumbo nucifera HOM05D003451 ORTHO05D003918 1.3e-11 72.8 63 57.1
MSTRG.17605 Avicennia marina HOM05D003451 ORTHO05D003918 1.8e-11 72.4 63 55.6
Sed0009927 Sechium edule HOM05D003451 ORTHO05D003918 1.8e-11 72.4 66 59.1
vmacro04126 Vaccinium macrocarpon HOM05D003451 ORTHO05D003918 1.8e-11 72.4 63 57.1
Actinidia06925 Actinidia chinensis HOM05D003451 ORTHO05D003918 2.3e-11 72.0 63 55.6
Ah.04g162060 Amaranthus hybridus HOM05D003451 ORTHO05D003918 2.3e-11 72.0 63 55.6
Aqoxy2G00229 Aquilegia oxysepala HOM05D003451 ORTHO05D003918 2.3e-11 72.0 63 57.1
ClCG03G013000 Citrullus lanatus HOM05D003451 ORTHO05D003918 2.3e-11 72.0 66 59.1
Lsat_1_v5_gn_6_25861 Lactuca sativa HOM05D003451 ORTHO05D003918 2.3e-11 72.0 63 57.1
CDE09G0232 Ceratophyllum demersum HOM05D003451 ORTHO05D003918 3.9e-11 71.2 63 57.1
Oeu001483.1 Olea europaea HOM05D003451 ORTHO05D003918 3.9e-11 71.2 63 57.1
ECA233G6223 Erigeron canadensis HOM05D003451 ORTHO05D003918 5.1e-11 70.9 64 57.8
Nn7g36360 Nelumbo nucifera HOM05D003451 ORTHO05D003918 5.1e-11 70.9 63 57.1
Solyc06g065470.4 Solanum lycopersicum HOM05D003451 ORTHO05D003918 5.1e-11 70.9 63 55.6
Sopen06g023960 Solanum pennellii HOM05D003451 ORTHO05D003918 5.1e-11 70.9 63 55.6
PGSC0003DMG400026119 Solanum tuberosum HOM05D003451 ORTHO05D003918 5.1e-11 70.9 63 55.6
TAR369G0018 Trochodendron aralioides HOM05D003451 ORTHO05D003918 5.1e-11 70.9 63 57.1
GSVIVG01026504001 Vitis vinifera HOM05D003451 ORTHO05D003918 5.1e-11 70.9 63 57.1
CSS0014106 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 6.7e-11 70.5 62 58.1
HanXRQChr13g0401231 Helianthus annuus HOM05D003451 ORTHO05D003918 6.7e-11 70.5 63 55.6
Psat2g186200 Pisum sativum HOM05D003451 ORTHO05D003918 6.7e-11 70.5 70 57.1
TAR623G1024 Trochodendron aralioides HOM05D003451 ORTHO05D003918 6.7e-11 70.5 63 57.1
MELO3C015160.2 Cucumis melo HOM05D003451 ORTHO05D003918 8.7e-11 70.1 66 57.6
CsaV3_1G043070 Cucumis sativus L. HOM05D003451 ORTHO05D003918 8.7e-11 70.1 66 57.6
Mapoly0141s0030 Marchantia polymorpha HOM05D003451 ORTHO05D003918 8.7e-11 70.1 68 55.9
Lsat_1_v5_gn_1_49181 Lactuca sativa HOM05D003451 ORTHO05D003918 1.1e-10 69.7 63 55.6
Peaxi162Scf00268g01431 Petunia axillaris HOM05D003451 ORTHO05D003918 1.1e-10 69.7 63 54.0
unitig_27.g25002 Utricularia gibba HOM05D003451 ORTHO05D003918 1.1e-10 69.7 63 57.1
Cc01_g05030 Coffea canephora HOM05D003451 ORTHO05D003918 1.9e-10 68.9 63 55.6
CiPaw.14G116900 Carya illinoinensis HOM05D003451 ORTHO05D003918 3.3e-10 68.2 71 56.3
HanXRQChr11g0351591 Helianthus annuus HOM05D003451 ORTHO05D003918 3.3e-10 68.2 63 54.0
QL01p004066 Quercus lobata HOM05D003451 ORTHO05D003918 3.3e-10 68.2 70 57.1
CiPaw.13G154800 Carya illinoinensis HOM05D003451 ORTHO05D003918 4.3e-10 67.8 71 56.3
CSS0003600 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 5.6e-10 67.4 62 56.5
Duzib168G0102 Durio zibethinus HOM05D003451 ORTHO05D003918 5.6e-10 67.4 70 57.1
Manes.14G004400 Manihot esculenta HOM05D003451 ORTHO05D003918 5.6e-10 67.4 66 56.1
Sc09g0000810 Simmondsia chinensis HOM05D003451 ORTHO05D003918 5.6e-10 67.4 49 63.3
Zm00001eb062000 Zea mays HOM05D003451 ORTHO05D003918 5.6e-10 67.4 63 54.0
Dinv36234 Davidia involucrata HOM05D003451 ORTHO05D003918 7.4e-10 67.0 63 54.0
Gohir.A13G218200 Gossypium hirsutum HOM05D003451 ORTHO05D003918 7.4e-10 67.0 70 57.1
Gohir.D13G221900 Gossypium hirsutum HOM05D003451 ORTHO05D003918 7.4e-10 67.0 70 57.1
Gorai.013G253000 Gossypium raimondii HOM05D003451 ORTHO05D003918 7.4e-10 67.0 70 57.1
Manes.06G162200 Manihot esculenta HOM05D003451 ORTHO05D003918 9.6e-10 66.6 66 56.1
CANSAT54G1907 Cannabis sativa HOM05D003451 ORTHO05D003918 1.3e-09 66.2 71 54.9
Haze_23175 Corylus avellana HOM05D003451 ORTHO05D003918 1.3e-09 66.2 71 54.9
Migut.D00628 Erythranthe guttata HOM05D003451 ORTHO05D003918 1.3e-09 66.2 63 52.4
Gohir.A09G110960 Gossypium hirsutum HOM05D003451 ORTHO05D003918 1.3e-09 66.2 70 55.7
THA.LOC104817916 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 1.3e-09 66.2 70 54.3
ATR0021G055 Amborella trichopoda HOM05D003451 ORTHO05D003918 1.6e-09 65.9 67 58.2
Gohir.D09G107600 Gossypium hirsutum HOM05D003451 ORTHO05D003918 1.6e-09 65.9 70 55.7
MSTRG.12458 Avicennia marina HOM05D003451 ORTHO05D003918 2.8e-09 65.1 49 57.1
CSS0020415 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 2.8e-09 65.1 72 45.8
CSS0021964 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 2.8e-09 65.1 51 56.9
Ca_24487_v3 Cicer arietinum L. HOM05D003451 ORTHO05D003918 3.7e-09 64.7 67 55.2
Eucgr.J00743 Eucalyptus grandis HOM05D003451 ORTHO05D003918 3.7e-09 64.7 65 56.9
Lj7A514T32 Lonicera japonica HOM05D003451 ORTHO05D003918 3.7e-09 64.7 49 59.2
AL1G59400 Arabidopsis lyrata HOM05D003451 ORTHO05D003918 4.8e-09 64.3 70 54.3
BcaB02g11254 Brassica carinata HOM05D003451 ORTHO05D003918 4.8e-09 64.3 65 60.0
Cfa009811 Carpinus fangiana HOM05D003451 ORTHO05D003918 4.8e-09 64.3 71 53.5
Duzib170G0373 Durio zibethinus HOM05D003451 ORTHO05D003918 4.8e-09 64.3 70 54.3
Gohir.D05G076000 Gossypium hirsutum HOM05D003451 ORTHO05D003918 4.8e-09 64.3 70 54.3
Gorai.009G077300 Gossypium raimondii HOM05D003451 ORTHO05D003918 4.8e-09 64.3 70 54.3
SalBow1G0548 Salvia bowleyana HOM05D003451 ORTHO05D003918 4.8e-09 64.3 49 57.1
SalBow1G0865 Salvia bowleyana HOM05D003451 ORTHO05D003918 4.8e-09 64.3 49 57.1
SalBow1G4695 Salvia bowleyana HOM05D003451 ORTHO05D003918 4.8e-09 64.3 49 57.1
SalBow6G3934 Salvia bowleyana HOM05D003451 ORTHO05D003918 4.8e-09 64.3 49 57.1
Thecc.09G245200 Theobroma cacao HOM05D003451 ORTHO05D003918 4.8e-09 64.3 70 55.7
Aa31LG10G3250 Aethionema arabicum HOM05D003451 ORTHO05D003918 6.2e-09 63.9 70 54.3
Medtr5g008890 Medicago truncatula HOM05D003451 ORTHO05D003918 6.2e-09 63.9 66 54.5
CSS0000811 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 8.1e-09 63.5 52 57.7
AUR62039863 Chenopodium quinoa HOM05D003451 ORTHO05D003918 8.1e-09 63.5 60 50.0
SGA_v2.0_scaffold3G01477 Striga asiatica HOM05D003451 ORTHO05D003918 8.1e-09 63.5 49 53.1
THA.LOC104816872 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 8.1e-09 63.5 69 52.2
Nitab4.5_0000159g0090 Nicotiana tabacum HOM05D003451 ORTHO05D003918 1.1e-08 63.2 49 59.2
Nitab4.5_0000531g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 1.1e-08 63.2 49 59.2
Os03g0809900 Oryza sativa ssp. japonica HOM05D003451 ORTHO05D003918 1.1e-08 63.2 63 52.4
AT1G51510 Arabidopsis thaliana HOM05D003451 ORTHO05D003918 1.4e-08 62.8 71 54.9
Cpa.g.sc84.26 Carica papaya HOM05D003451 ORTHO05D003918 1.4e-08 62.8 70 54.3
COL.COLO4_37539 Corchorus olitorius HOM05D003451 ORTHO05D003918 1.4e-08 62.8 70 52.9
Glyma.01G227300 Glycine max HOM05D003451 ORTHO05D003918 1.4e-08 62.8 67 53.7
Glyma.11G015500 Glycine max HOM05D003451 ORTHO05D003918 1.4e-08 62.8 67 53.7
Gohir.A05G073100 Gossypium hirsutum HOM05D003451 ORTHO05D003918 1.4e-08 62.8 70 52.9
BcaC08g43919 Brassica carinata HOM05D003451 ORTHO05D003918 1.8e-08 62.4 65 56.9
C06p13130 Brassica napus HOM05D003451 ORTHO05D003918 1.8e-08 62.4 65 56.9
BolC6t36469H Brassica oleracea HOM05D003451 ORTHO05D003918 1.8e-08 62.4 65 56.9
CARHR041670 Cardamine hirsuta HOM05D003451 ORTHO05D003918 1.8e-08 62.4 67 55.2
Dinv22160 Davidia involucrata HOM05D003451 ORTHO05D003918 1.8e-08 62.4 50 56.0
Hund07469 Selenicereus undatus HOM05D003451 ORTHO05D003918 2.4e-08 62.0 48 56.2
THA.LOC104811180 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 2.4e-08 62.0 70 51.4
Ah.06g193890 Amaranthus hybridus HOM05D003451 ORTHO05D003918 3.1e-08 61.6 60 51.7
CSS0010909 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 3.1e-08 61.6 48 58.3
Ciclev10016808m.g Citrus clementina HOM05D003451 ORTHO05D003918 3.1e-08 61.6 70 52.9
Gorai.006G125200 Gossypium raimondii HOM05D003451 ORTHO05D003918 3.1e-08 61.6 53 56.6
Pp3c11_21740 Physcomitrium patens HOM05D003451 ORTHO05D003918 3.1e-08 61.6 65 53.8
Prupe.4G255000 Prunus persica HOM05D003451 ORTHO05D003918 3.1e-08 61.6 68 52.9
TPR.G37988 Trifolium pratense HOM05D003451 ORTHO05D003918 3.1e-08 61.6 67 53.7
arahy.Tifrunner.gnm1.ann1.KKL1UE Arachis hypogaea HOM05D003451 ORTHO05D003918 4.0e-08 61.2 70 52.9
arahy.Tifrunner.gnm1.ann1.ZE8HJS Arachis hypogaea HOM05D003451 ORTHO05D003918 4.0e-08 61.2 70 52.9
A05p19520 Brassica napus HOM05D003451 ORTHO05D003918 4.0e-08 61.2 65 55.4
CSS0015848 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 4.0e-08 61.2 87 43.7
Nitab4.5_0003158g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 4.0e-08 61.2 49 55.1
Pp3c7_3000 Physcomitrium patens HOM05D003451 ORTHO05D003918 4.0e-08 61.2 65 53.8
BcaB04g17193 Brassica carinata HOM05D003451 ORTHO05D003918 5.3e-08 60.8 69 53.6
Potri.009G051000 Populus trichocarpa HOM05D003451 ORTHO05D003918 5.3e-08 60.8 70 50.0
unitig_699.g19138 Utricularia gibba HOM05D003451 ORTHO05D003918 5.3e-08 60.8 49 55.1
BcaC08g43315 Brassica carinata HOM05D003451 ORTHO05D003918 6.9e-08 60.5 65 55.4
A06p02460 Brassica napus HOM05D003451 ORTHO05D003918 6.9e-08 60.5 65 55.4
C06p06630 Brassica napus HOM05D003451 ORTHO05D003918 6.9e-08 60.5 65 55.4
BolC6t35776H Brassica oleracea HOM05D003451 ORTHO05D003918 6.9e-08 60.5 65 55.4
BraA06t23452Z Brassica rapa HOM05D003451 ORTHO05D003918 6.9e-08 60.5 65 55.4
RcHm_v2.0_Chr5g0053031 Rosa chinensis HOM05D003451 ORTHO05D003918 6.9e-08 60.5 68 51.5
AagrBONN_evm.TU.Sc2ySwM_344.5320 Anthoceros agrestis HOM05D003451 ORTHO05D003918 9.0e-08 60.1 68 52.9
BraA05t20856Z Brassica rapa HOM05D003451 ORTHO05D003918 9.0e-08 60.1 65 53.8
Potri.001G255600 Populus trichocarpa HOM05D003451 ORTHO05D003918 9.0e-08 60.1 67 50.7
Rhsim01G0192600 Rhododendron simsii HOM05D003451 ORTHO05D003918 9.0e-08 60.1 49 55.1
Atru.chr3.2648 Acer truncatum HOM05D003451 ORTHO05D003918 1.2e-07 59.7 70 51.4
BcaB07g33596 Brassica carinata HOM05D003451 ORTHO05D003918 1.2e-07 59.7 65 53.8
Phvul.002G034400 Phaseolus vulgaris HOM05D003451 ORTHO05D003918 1.2e-07 59.7 67 52.2
Sabra16G0156600 Salix brachista HOM05D003451 ORTHO05D003918 1.2e-07 59.7 49 55.1
Sp1g38150 Schrenkiella parvula HOM05D003451 ORTHO05D003918 1.2e-07 59.7 68 54.4
VMungo1215G1947 Vigna mungo HOM05D003451 ORTHO05D003918 1.2e-07 59.7 67 52.2
Thhalv10011787m.g Eutrema salsugineum HOM05D003451 ORTHO05D003918 1.5e-07 59.3 49 57.1
Hund07468 Selenicereus undatus HOM05D003451 ORTHO05D003918 1.5e-07 59.3 49 53.1
BcaC01g01279 Brassica carinata HOM05D003451 ORTHO05D003918 2.0e-07 58.9 69 52.2
A08p02680 Brassica napus HOM05D003451 ORTHO05D003918 2.0e-07 58.9 69 52.2
C03p90160 Brassica napus HOM05D003451 ORTHO05D003918 2.0e-07 58.9 69 52.2
BolC3t21338H Brassica oleracea HOM05D003451 ORTHO05D003918 2.0e-07 58.9 69 52.2
BraA08t32308Z Brassica rapa HOM05D003451 ORTHO05D003918 2.0e-07 58.9 69 52.2
Carub.0001s4036 Capsella rubella HOM05D003451 ORTHO05D003918 2.0e-07 58.9 64 56.2
TWI60G0042 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 2.0e-07 58.9 67 49.3
LjContig00222g0014229 Lotus japonicus HOM05D003451 ORTHO05D003918 2.6e-07 58.5 67 52.2
SMO144G0212 Selaginella moellendorffii HOM05D003451 ORTHO05D003918 2.6e-07 58.5 67 50.7
CBR_g6624 Chara braunii HOM05D003451 ORTHO05D003918 3.4e-07 58.2 65 52.3
PGR102G1026 Punica granatum HOM05D003451 ORTHO05D003918 3.4e-07 58.2 65 47.7
TWI32G0677 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 3.4e-07 58.2 67 49.3
HanXRQChr01g0029351 Helianthus annuus HOM05D003451 ORTHO05D003918 5.8e-07 57.4 63 47.6
Lalb_Chr09g0320421 Lupinus albus HOM05D003451 ORTHO05D003918 5.8e-07 57.4 67 52.2
Lalb_Chr16g0376831 Lupinus albus HOM05D003451 ORTHO05D003918 9.9e-07 56.6 67 50.7
FvH4_3g28440 Fragaria vesca HOM05D003451 ORTHO05D003918 2.2e-06 55.5 68 47.1
FAN11G2798 Fragaria x ananassa HOM05D003451 ORTHO05D003918 2.2e-06 55.5 68 47.1
FAN16G1931 Fragaria x ananassa HOM05D003451 ORTHO05D003918 2.2e-06 55.5 68 47.1
FAN25G3146 Fragaria x ananassa HOM05D003451 ORTHO05D003918 2.2e-06 55.5 68 47.1
MD03G1171900 Malus domestica HOM05D003451 ORTHO05D003918 2.2e-06 55.5 69 47.8
Potri.006G048300 Populus trichocarpa HOM05D003451 ORTHO05D003918 2.2e-06 55.5 63 50.8
Sabra06G0033600 Salix brachista HOM05D003451 ORTHO05D003918 2.2e-06 55.5 57 45.6
MD11G1189700 Malus domestica HOM05D003451 ORTHO05D003918 2.9e-06 55.1 69 47.8
MD12G1080200 Malus domestica HOM05D003451 ORTHO05D003918 3.8e-06 54.7 63 50.8
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 3.8e-06 54.7 38 63.2
Sopen11g008970 Solanum pennellii HOM05D000006 ORTHO05D000001 3.8e-06 54.7 47 53.2
COL.COLO4_05419 Corchorus olitorius HOM05D003451 ORTHO05D003918 4.9e-06 54.3 42 59.5
Dinv39631 Davidia involucrata HOM05D003451 ORTHO05D003918 4.9e-06 54.3 63 47.6
Nitab4.5_0003160g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 4.9e-06 54.3 40 60.0
SGA_v2.0_scaffold42G16078 Striga asiatica HOM05D003451 ORTHO05D003918 4.9e-06 54.3 38 60.5
TWI34G0098 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 8.4e-06 53.5 70 47.1


User provided reference genes

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