Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb093690 Zea mays HOM05D003051 ORTHO05D003932 4.0e-139 498.0 242 100.0
Zm00001eb168990 Zea mays HOM05D003051 ORTHO05D003932 1.8e-91 339.7 176 93.8
Zm00001eb302850 Zea mays HOM05D003051 ORTHO05D003932 2.5e-69 266.2 169 82.8
Zm00001eb398510 Zea mays HOM05D003051 ORTHO05D003932 3.4e-42 176.0 136 70.6
Zm00001eb089770 Zea mays HOM05D003051 ORTHO05D003932 6.5e-41 171.8 125 75.2
Zm00001eb010860 Zea mays HOM05D003051 ORTHO05D003932 3.2e-40 169.5 136 67.6
Zm00001eb385270 Zea mays HOM05D003051 ORTHO05D003932 7.9e-39 164.9 125 72.8
Os02g0806900 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 3.0e-38 162.9 125 68.0
Os03g0252800 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 1.1e-37 161.0 125 68.8
Os10g0189600 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 2.0e-37 160.2 125 66.4
Zm00001eb089180 Zea mays HOM05D003051 ORTHO05D003932 3.5e-34 149.4 112 70.5
HPP92_014444 Vanilla planifolia HOM05D003051 ORTHO05D003932 1.0e-30 137.9 131 58.0
CDE04G1802 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 2.9e-25 119.8 116 55.2
CSS0012370 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 3.2e-24 116.3 119 52.9
Gohir.A10G001900 Gossypium hirsutum HOM05D003051 ORTHO05D003932 3.2e-24 116.3 132 50.0
Dinv37116 Davidia involucrata HOM05D003051 ORTHO05D003932 4.2e-24 115.9 130 49.2
Sc02g0008680 Simmondsia chinensis HOM05D003051 ORTHO05D003932 4.2e-24 115.9 124 51.6
CSS0022220 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 5.5e-24 115.5 119 52.1
CDE03G0158 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 5.5e-24 115.5 116 54.3
Rhsim10G0081500 Rhododendron simsii HOM05D003051 ORTHO05D003932 5.5e-24 115.5 122 52.5
Lsat_1_v5_gn_5_96860 Lactuca sativa HOM05D003051 ORTHO05D003932 9.4e-24 114.8 119 52.1
Thecc.06G056600 Theobroma cacao HOM05D003051 ORTHO05D003932 9.4e-24 114.8 130 50.8
Manes.12G080800 Manihot esculenta HOM05D003051 ORTHO05D003932 1.2e-23 114.4 134 47.8
Duzib160G0152 Durio zibethinus HOM05D003051 ORTHO05D003932 1.6e-23 114.0 124 51.6
Gohir.A10G159000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 2.1e-23 113.6 132 49.2
Gorai.011G091200 Gossypium raimondii HOM05D003051 ORTHO05D003932 2.1e-23 113.6 132 49.2
Duzib235G0371 Durio zibethinus HOM05D003051 ORTHO05D003932 2.7e-23 113.2 124 51.6
Gohir.D10G084100 Gossypium hirsutum HOM05D003051 ORTHO05D003932 2.7e-23 113.2 132 49.2
Ciclev10025496m.g Citrus clementina HOM05D003051 ORTHO05D003932 3.6e-23 112.8 122 51.6
Cc08_g11730 Coffea canephora HOM05D003051 ORTHO05D003932 3.6e-23 112.8 116 50.9
Dinv36492 Davidia involucrata HOM05D003051 ORTHO05D003932 3.6e-23 112.8 130 48.5
Gohir.D10G002000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 4.7e-23 112.5 132 49.2
Gorai.011G002400 Gossypium raimondii HOM05D003051 ORTHO05D003932 4.7e-23 112.5 132 49.2
Potri.012G043800 Populus trichocarpa HOM05D003051 ORTHO05D003932 8.0e-23 111.7 127 49.6
Cfa006516 Carpinus fangiana HOM05D003051 ORTHO05D003932 1.0e-22 111.3 119 51.3
Haze_06246 Corylus avellana HOM05D003051 ORTHO05D003932 1.0e-22 111.3 119 51.3
DCAR_009315 Daucus carota HOM05D003051 ORTHO05D003932 1.0e-22 111.3 119 49.6
Nn3g21075 Nelumbo nucifera HOM05D003051 ORTHO05D003932 1.0e-22 111.3 116 52.6
Hund22046 Selenicereus undatus HOM05D003051 ORTHO05D003932 1.4e-22 110.9 123 50.4
COL.COLO4_31149 Corchorus olitorius HOM05D003051 ORTHO05D003932 1.8e-22 110.5 124 49.2
GSVIVG01000259001 Vitis vinifera HOM05D003051 ORTHO05D003932 1.8e-22 110.5 119 48.7
QL02p004168 Quercus lobata HOM05D003051 ORTHO05D003932 3.0e-22 109.8 119 51.3
SalBow5G0877 Salvia bowleyana HOM05D003051 ORTHO05D003932 3.0e-22 109.8 119 49.6
SGA_v2.0_scaffold28G11959 Striga asiatica HOM05D003051 ORTHO05D003932 3.0e-22 109.8 81 61.7
TAR636G0749 Trochodendron aralioides HOM05D003051 ORTHO05D003932 3.0e-22 109.8 127 48.8
Actinidia17302 Actinidia chinensis HOM05D003051 ORTHO05D003932 4.0e-22 109.4 124 49.2
SGA_v2.0_scaffold83G26334 Striga asiatica HOM05D003051 ORTHO05D003932 4.0e-22 109.4 81 60.5
TWI18G0714 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 4.0e-22 109.4 119 50.4
TWI63G1017 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 4.0e-22 109.4 116 51.7
MELO3C010839.2 Cucumis melo HOM05D003051 ORTHO05D003932 5.2e-22 109.0 128 46.9
DCAR_020911 Daucus carota HOM05D003051 ORTHO05D003932 5.2e-22 109.0 119 47.9
vmacro08505 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 5.2e-22 109.0 124 50.0
vmacro22602 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 5.2e-22 109.0 124 50.0
CANSAT78G1339 Cannabis sativa HOM05D003051 ORTHO05D003932 6.8e-22 108.6 124 48.4
Haze_04268 Corylus avellana HOM05D003051 ORTHO05D003932 6.8e-22 108.6 119 50.4
Lj7A426G51 Lonicera japonica HOM05D003051 ORTHO05D003932 6.8e-22 108.6 119 48.7
RcHm_v2.0_Chr6g0308441 Rosa chinensis HOM05D003051 ORTHO05D003932 6.8e-22 108.6 128 50.0
Aqoxy2G01411 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 8.8e-22 108.2 118 50.0
Atru.chr13.2284 Acer truncatum HOM05D003051 ORTHO05D003932 1.2e-21 107.8 130 47.7
Glyma.17G239700 Glycine max HOM05D003051 ORTHO05D003932 1.2e-21 107.8 124 48.4
ECA232G4354 Erigeron canadensis HOM05D003051 ORTHO05D003932 1.5e-21 107.5 119 47.1
FvH4_2g33970 Fragaria vesca HOM05D003051 ORTHO05D003932 1.5e-21 107.5 128 49.2
FAN24G2348 Fragaria x ananassa HOM05D003051 ORTHO05D003932 1.5e-21 107.5 128 49.2
Nitab4.5_0000318g0090 Nicotiana tabacum HOM05D003051 ORTHO05D003932 1.5e-21 107.5 119 49.6
Prupe.1G431600 Prunus persica HOM05D003051 ORTHO05D003932 1.5e-21 107.5 124 49.2
PGR102G2746 Punica granatum HOM05D003051 ORTHO05D003932 1.5e-21 107.5 128 48.4
Sed0025362 Sechium edule HOM05D003051 ORTHO05D003932 1.5e-21 107.5 127 47.2
Glyma.14G085100 Glycine max HOM05D003051 ORTHO05D003932 2.0e-21 107.1 124 47.6
Sabra12G0030700 Salix brachista HOM05D003051 ORTHO05D003932 2.0e-21 107.1 122 49.2
ClCG08G016130 Citrullus lanatus HOM05D003051 ORTHO05D003932 3.4e-21 106.3 128 46.1
HanXRQChr05g0150761 Helianthus annuus HOM05D003051 ORTHO05D003932 3.4e-21 106.3 133 45.9
Sabra15G0028600 Salix brachista HOM05D003051 ORTHO05D003932 4.4e-21 105.9 127 47.2
CAN.G2.17 Capsicum annuum HOM05D003051 ORTHO05D003932 5.7e-21 105.5 112 51.8
Migut.B00582 Erythranthe guttata HOM05D003051 ORTHO05D003932 5.7e-21 105.5 119 47.9
Nitab4.5_0000167g0090 Nicotiana tabacum HOM05D003051 ORTHO05D003932 5.7e-21 105.5 112 51.8
Potri.015G034600 Populus trichocarpa HOM05D003051 ORTHO05D003932 5.7e-21 105.5 127 48.8
TAR374G0623 Trochodendron aralioides HOM05D003051 ORTHO05D003932 5.7e-21 105.5 119 46.2
TAR374G0874 Trochodendron aralioides HOM05D003051 ORTHO05D003932 5.7e-21 105.5 119 46.2
Nitab4.5_0001579g0140 Nicotiana tabacum HOM05D003051 ORTHO05D003932 7.5e-21 105.1 112 51.8
Peaxi162Scf01013g00014 Petunia axillaris HOM05D003051 ORTHO05D003932 7.5e-21 105.1 112 51.8
Solyc11g019950.2 Solanum lycopersicum HOM05D003051 ORTHO05D003932 7.5e-21 105.1 112 50.9
Sopen11g010060 Solanum pennellii HOM05D003051 ORTHO05D003932 7.5e-21 105.1 112 50.9
Peaxi162Scf00699g00636 Petunia axillaris HOM05D003051 ORTHO05D003932 9.8e-21 104.8 119 47.9
CsaV3_2G026490 Cucumis sativus L. HOM05D003051 ORTHO05D003932 1.3e-20 104.4 119 47.9
VMungo0647G0828 Vigna mungo HOM05D003051 ORTHO05D003932 1.3e-20 104.4 118 48.3
Lalb_Chr14g0368521 Lupinus albus HOM05D003051 ORTHO05D003932 1.7e-20 104.0 119 48.7
PGSC0003DMG400027619 Solanum tuberosum HOM05D003051 ORTHO05D003932 1.7e-20 104.0 112 50.9
EL10Ac1g02184 Beta vulgaris HOM05D003051 ORTHO05D003932 2.2e-20 103.6 138 44.2
Lj5g0018018 Lotus japonicus HOM05D003051 ORTHO05D003932 2.2e-20 103.6 116 49.1
Lalb_Chr22g0354981 Lupinus albus HOM05D003051 ORTHO05D003932 2.2e-20 103.6 118 49.2
Cc11_g04320 Coffea canephora HOM05D003051 ORTHO05D003932 2.8e-20 103.2 115 48.7
HanXRQChr05g0134541 Helianthus annuus HOM05D003051 ORTHO05D003932 2.8e-20 103.2 133 45.1
HanXRQChr05g0134611 Helianthus annuus HOM05D003051 ORTHO05D003932 2.8e-20 103.2 133 45.1
Phvul.001G024100 Phaseolus vulgaris HOM05D003051 ORTHO05D003932 2.8e-20 103.2 133 43.6
THA.LOC104807468 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 4.8e-20 102.4 127 45.7
AT4G36480 Arabidopsis thaliana HOM05D003051 ORTHO05D003932 6.3e-20 102.1 127 46.5
A03p64250 Brassica napus HOM05D003051 ORTHO05D003932 8.3e-20 101.7 127 48.0
C07p61710 Brassica napus HOM05D003051 ORTHO05D003932 8.3e-20 101.7 127 48.0
BolC7t46596H Brassica oleracea HOM05D003051 ORTHO05D003932 8.3e-20 101.7 127 48.0
BraA03t15496Z Brassica rapa HOM05D003051 ORTHO05D003932 8.3e-20 101.7 127 48.0
Aa31LG6G13270 Aethionema arabicum HOM05D003051 ORTHO05D003932 1.1e-19 101.3 127 45.7
Ah.01g003510 Amaranthus hybridus HOM05D003051 ORTHO05D003932 1.1e-19 101.3 136 44.1
Solyc08g066020.3 Solanum lycopersicum HOM05D003051 ORTHO05D003932 1.1e-19 101.3 118 48.3
THA.LOC104804240 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 1.1e-19 101.3 127 44.9
CARHR244800 Cardamine hirsuta HOM05D003051 ORTHO05D003932 1.4e-19 100.9 127 46.5
PGR119G2325 Punica granatum HOM05D003051 ORTHO05D003932 1.4e-19 100.9 119 46.2
Sopen08g019680 Solanum pennellii HOM05D003051 ORTHO05D003932 1.4e-19 100.9 118 48.3
AL7G14600 Arabidopsis lyrata HOM05D003051 ORTHO05D003932 1.8e-19 100.5 127 46.5
Medtr1g018970 Medicago truncatula HOM05D003051 ORTHO05D003932 1.8e-19 100.5 119 46.2
Psat2g055640 Pisum sativum HOM05D003051 ORTHO05D003932 1.8e-19 100.5 119 46.2
TPR.G3789 Trifolium pratense HOM05D003051 ORTHO05D003932 1.8e-19 100.5 119 47.1
Ca_05631_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 2.4e-19 100.1 119 46.2
BraA01t00227Z Brassica rapa HOM05D003051 ORTHO05D003932 3.1e-19 99.8 114 49.1
Psat0s3398g0040 Pisum sativum HOM05D003051 ORTHO05D003932 3.1e-19 99.8 119 46.2
TPR.G18000 Trifolium pratense HOM05D003051 ORTHO05D003932 3.1e-19 99.8 119 46.2
A01p02390 Brassica napus HOM05D003051 ORTHO05D003932 4.1e-19 99.4 127 45.7
AUR62035016 Chenopodium quinoa HOM05D003051 ORTHO05D003932 4.1e-19 99.4 119 47.1
Thhalv10025064m.g Eutrema salsugineum HOM05D003051 ORTHO05D003932 4.1e-19 99.4 127 46.5
FAN15G3751 Fragaria x ananassa HOM05D003051 ORTHO05D003932 4.1e-19 99.4 138 45.7
FAN27G0244 Fragaria x ananassa HOM05D003051 ORTHO05D003932 4.1e-19 99.4 138 45.7
AUR62041898 Chenopodium quinoa HOM05D003051 ORTHO05D003932 5.4e-19 99.0 119 46.2
Mapoly0025s0004 Marchantia polymorpha HOM05D003051 ORTHO05D003932 5.4e-19 99.0 118 48.3
Medtr5g072020 Medicago truncatula HOM05D003051 ORTHO05D003932 7.0e-19 98.6 119 44.5
Medtr3g054030 Medicago truncatula HOM05D003051 ORTHO05D003932 9.1e-19 98.2 119 44.5
CAN.G9.7 Capsicum annuum HOM05D003051 ORTHO05D003932 1.2e-18 97.8 119 46.2
MBI18_g02835_MAGBIO Magnolia biondii HOM05D003051 ORTHO05D003932 1.2e-18 97.8 71 63.4
Lalb_Chr24g0399381 Lupinus albus HOM05D003051 ORTHO05D003932 2.0e-18 97.1 70 64.3
Lsat_1_v5_gn_8_62240 Lactuca sativa HOM05D003051 ORTHO05D003932 4.5e-18 95.9 119 45.4
Sp7g34130 Schrenkiella parvula HOM05D003051 ORTHO05D003932 7.7e-18 95.1 127 44.1
Ca_13275_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 1.0e-17 94.7 119 43.7
ATR0222G029 Amborella trichopoda HOM05D003051 ORTHO05D003932 1.3e-17 94.4 70 61.4
Carub.0007s0384 Capsella rubella HOM05D003051 ORTHO05D003932 1.7e-17 94.0 127 43.3
RcHm_v2.0_Chr7g0217761 Rosa chinensis HOM05D003051 ORTHO05D003932 1.7e-17 94.0 90 56.7
arahy.Tifrunner.gnm1.ann1.11SE8F Arachis hypogaea HOM05D003051 ORTHO05D003932 2.2e-17 93.6 119 45.4
arahy.Tifrunner.gnm1.ann1.53VZ2L Arachis hypogaea HOM05D003051 ORTHO05D003932 2.2e-17 93.6 119 43.7
arahy.Tifrunner.gnm1.ann1.GJWA3D Arachis hypogaea HOM05D003051 ORTHO05D003932 2.2e-17 93.6 119 45.4
arahy.Tifrunner.gnm1.ann1.QNA1HW Arachis hypogaea HOM05D003051 ORTHO05D003932 2.2e-17 93.6 119 43.7
Eucgr.D00310 Eucalyptus grandis HOM05D003051 ORTHO05D003932 2.9e-17 93.2 114 45.6
MD08G1095600 Malus domestica HOM05D003051 ORTHO05D003932 6.5e-17 92.0 118 43.2
BcaNung05309 Brassica carinata HOM05D003051 ORTHO05D003932 8.5e-17 91.7 127 44.1
MD15G1077700 Malus domestica HOM05D003051 ORTHO05D003932 3.2e-16 89.7 119 41.2
PSO339G0046 Papaver somniferum HOM05D003051 ORTHO05D003932 4.2e-16 89.4 118 40.7
PSO384G5107 Papaver somniferum HOM05D003051 ORTHO05D003932 4.2e-16 89.4 118 40.7
CBR_g21746 Chara braunii HOM05D003051 ORTHO05D003932 1.2e-15 87.8 72 59.7
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.6e-15 87.4 66 65.2
Nitab4.5_0002021g0050 Nicotiana tabacum HOM05D003051 ORTHO05D003932 3.6e-15 86.3 163 36.2
CSS0004660 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 6.1e-15 85.5 119 43.7
Pp3c7_5350 Physcomitrium patens HOM05D003051 ORTHO05D003932 6.8e-14 82.0 108 41.7
SMO361G0305 Selaginella moellendorffii HOM05D003051 ORTHO05D003932 5.7e-13 79.0 69 55.1
AagrBONN_evm.TU.Sc2ySwM_362.1674 Anthoceros agrestis HOM05D003051 ORTHO05D003932 7.5e-13 78.6 87 47.1
vmacro18084 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 5.4e-11 72.4 212 28.3
Gorai.002G090800 Gossypium raimondii HOM05D003051 ORTHO05D003932 4.3e-08 62.8 44 63.6
Oeu019029.1 Olea europaea HOM05D003051 ORTHO05D003932 4.3e-08 62.8 84 45.2
Cre03.g146507 Chlamydomonas reinhardtii HOM05D003051 ORTHO05D003932 7.3e-08 62.0 83 39.8
Manes.13G154966 Manihot esculenta HOM05D003051 ORTHO05D003932 7.3e-08 62.0 84 44.0
AUR62006503 Chenopodium quinoa HOM05D003051 ORTHO05D003932 4.7e-07 59.3 80 45.0
AUR62025029 Chenopodium quinoa HOM05D003051 ORTHO05D003932 4.7e-07 59.3 80 45.0
CiPaw.09G069100 Carya illinoinensis HOM05D003051 ORTHO05D003932 1.8e-06 57.4 41 61.0
Cpa.g.sc7.67 Carica papaya HOM05D003051 ORTHO05D024854 3.0e-06 56.6 79 43.0
unitig_62.g23741 Utricularia gibba HOM05D003051 ORTHO05D003932 4.0e-06 56.2 92 39.1
TAR629G0164 Trochodendron aralioides HOM05D003051 ORTHO05D414663 5.2e-06 55.8 58 43.1


User provided reference genes

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