Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb089180 Zea mays HOM05D003051 ORTHO05D003932 9.9e-135 483.4 238 100.0
Zm00001eb398510 Zea mays HOM05D003051 ORTHO05D003932 3.3e-69 265.8 134 95.5
Zm00001eb385270 Zea mays HOM05D003051 ORTHO05D003932 1.2e-68 263.8 137 93.4
Zm00001eb089770 Zea mays HOM05D003051 ORTHO05D003932 1.8e-67 260.0 134 94.0
Zm00001eb010860 Zea mays HOM05D003051 ORTHO05D003932 4.0e-67 258.8 134 91.8
Os02g0806900 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 1.3e-65 253.8 134 87.3
Os10g0189600 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 6.3e-65 251.5 134 86.6
Os03g0252800 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 1.1e-64 250.8 134 87.3
HPP92_014444 Vanilla planifolia HOM05D003051 ORTHO05D003932 8.0e-60 234.6 134 82.1
Sc02g0008680 Simmondsia chinensis HOM05D003051 ORTHO05D003932 8.6e-54 214.5 134 74.6
CANSAT78G1339 Cannabis sativa HOM05D003051 ORTHO05D003932 1.9e-53 213.4 137 73.0
RcHm_v2.0_Chr6g0308441 Rosa chinensis HOM05D003051 ORTHO05D003932 4.3e-53 212.2 137 74.5
Manes.12G080800 Manihot esculenta HOM05D003051 ORTHO05D003932 5.6e-53 211.8 137 71.5
Cfa006516 Carpinus fangiana HOM05D003051 ORTHO05D003932 7.3e-53 211.5 137 72.3
TWI63G1017 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 7.3e-53 211.5 137 73.7
CSS0012370 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 9.5e-53 211.1 134 72.4
CDE04G1802 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 9.5e-53 211.1 134 72.4
DCAR_009315 Daucus carota HOM05D003051 ORTHO05D003932 9.5e-53 211.1 134 72.4
FvH4_2g33970 Fragaria vesca HOM05D003051 ORTHO05D003932 9.5e-53 211.1 137 73.7
FAN24G2348 Fragaria x ananassa HOM05D003051 ORTHO05D003932 9.5e-53 211.1 137 73.7
Atru.chr13.2284 Acer truncatum HOM05D003051 ORTHO05D003932 1.2e-52 210.7 137 73.0
Thecc.06G056600 Theobroma cacao HOM05D003051 ORTHO05D003932 1.2e-52 210.7 137 72.3
CDE03G0158 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 1.6e-52 210.3 140 69.3
MELO3C010839.2 Cucumis melo HOM05D003051 ORTHO05D003932 1.6e-52 210.3 137 70.8
PGR102G2746 Punica granatum HOM05D003051 ORTHO05D003932 2.8e-52 209.5 137 71.5
Ciclev10025496m.g Citrus clementina HOM05D003051 ORTHO05D003932 3.6e-52 209.1 137 72.3
DCAR_020911 Daucus carota HOM05D003051 ORTHO05D003932 3.6e-52 209.1 134 71.6
Nn3g21075 Nelumbo nucifera HOM05D003051 ORTHO05D003932 3.6e-52 209.1 134 71.6
COL.COLO4_31149 Corchorus olitorius HOM05D003051 ORTHO05D003932 4.7e-52 208.8 137 71.5
Haze_04268 Corylus avellana HOM05D003051 ORTHO05D003932 4.7e-52 208.8 137 71.5
Gohir.A10G001900 Gossypium hirsutum HOM05D003051 ORTHO05D003932 4.7e-52 208.8 137 70.8
QL02p004168 Quercus lobata HOM05D003051 ORTHO05D003932 4.7e-52 208.8 137 72.3
Sed0025362 Sechium edule HOM05D003051 ORTHO05D003932 4.7e-52 208.8 137 70.8
CSS0022220 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 6.2e-52 208.4 134 70.9
Duzib235G0371 Durio zibethinus HOM05D003051 ORTHO05D003932 6.2e-52 208.4 137 71.5
ClCG08G016130 Citrullus lanatus HOM05D003051 ORTHO05D003932 8.0e-52 208.0 137 70.1
Haze_06246 Corylus avellana HOM05D003051 ORTHO05D003932 8.0e-52 208.0 137 71.5
Lsat_1_v5_gn_5_96860 Lactuca sativa HOM05D003051 ORTHO05D003932 8.0e-52 208.0 134 72.4
TWI18G0714 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 8.0e-52 208.0 137 72.3
TAR636G0749 Trochodendron aralioides HOM05D003051 ORTHO05D003932 1.4e-51 207.2 134 71.6
AT4G36480 Arabidopsis thaliana HOM05D003051 ORTHO05D003932 2.3e-51 206.5 137 70.8
Nitab4.5_0000167g0090 Nicotiana tabacum HOM05D003051 ORTHO05D003932 2.3e-51 206.5 134 71.6
Peaxi162Scf01013g00014 Petunia axillaris HOM05D003051 ORTHO05D003932 2.3e-51 206.5 134 71.6
Dinv37116 Davidia involucrata HOM05D003051 ORTHO05D003932 3.1e-51 206.1 134 71.6
Duzib160G0152 Durio zibethinus HOM05D003051 ORTHO05D003932 3.1e-51 206.1 137 70.8
Gohir.A10G159000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 3.1e-51 206.1 137 70.1
Gorai.011G091200 Gossypium raimondii HOM05D003051 ORTHO05D003932 3.1e-51 206.1 137 70.1
Lalb_Chr14g0368521 Lupinus albus HOM05D003051 ORTHO05D003932 3.1e-51 206.1 134 71.6
Lalb_Chr22g0354981 Lupinus albus HOM05D003051 ORTHO05D003932 3.1e-51 206.1 137 70.8
Nitab4.5_0001579g0140 Nicotiana tabacum HOM05D003051 ORTHO05D003932 3.1e-51 206.1 134 71.6
Hund22046 Selenicereus undatus HOM05D003051 ORTHO05D003932 3.1e-51 206.1 134 71.6
Gohir.D10G084100 Gossypium hirsutum HOM05D003051 ORTHO05D003932 4.0e-51 205.7 137 70.1
Solyc11g019950.2 Solanum lycopersicum HOM05D003051 ORTHO05D003932 4.0e-51 205.7 134 70.1
Sopen11g010060 Solanum pennellii HOM05D003051 ORTHO05D003932 4.0e-51 205.7 134 70.1
CARHR244800 Cardamine hirsuta HOM05D003051 ORTHO05D003932 5.2e-51 205.3 137 71.5
Cc08_g11730 Coffea canephora HOM05D003051 ORTHO05D003932 5.2e-51 205.3 134 69.4
CsaV3_2G026490 Cucumis sativus L. HOM05D003051 ORTHO05D003932 5.2e-51 205.3 137 69.3
ECA232G4354 Erigeron canadensis HOM05D003051 ORTHO05D003932 5.2e-51 205.3 134 71.6
PGR119G2325 Punica granatum HOM05D003051 ORTHO05D003932 5.2e-51 205.3 137 70.1
THA.LOC104807468 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 5.2e-51 205.3 137 70.8
AL7G14600 Arabidopsis lyrata HOM05D003051 ORTHO05D003932 6.8e-51 204.9 137 70.8
Gohir.D10G002000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 6.8e-51 204.9 137 70.1
Gorai.011G002400 Gossypium raimondii HOM05D003051 ORTHO05D003932 6.8e-51 204.9 137 70.1
Rhsim10G0081500 Rhododendron simsii HOM05D003051 ORTHO05D003932 6.8e-51 204.9 134 72.4
PGSC0003DMG400027619 Solanum tuberosum HOM05D003051 ORTHO05D003932 8.9e-51 204.5 134 70.1
THA.LOC104804240 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 8.9e-51 204.5 137 70.1
Prupe.1G431600 Prunus persica HOM05D003051 ORTHO05D003932 1.2e-50 204.1 137 70.1
Aa31LG6G13270 Aethionema arabicum HOM05D003051 ORTHO05D003932 1.5e-50 203.8 137 70.8
A01p02390 Brassica napus HOM05D003051 ORTHO05D003932 1.5e-50 203.8 137 70.1
CAN.G2.17 Capsicum annuum HOM05D003051 ORTHO05D003932 1.5e-50 203.8 134 70.9
Psat0s3398g0040 Pisum sativum HOM05D003051 ORTHO05D003932 1.5e-50 203.8 135 70.4
Aqoxy2G01411 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 2.0e-50 203.4 137 69.3
HanXRQChr05g0150761 Helianthus annuus HOM05D003051 ORTHO05D003932 2.0e-50 203.4 134 72.4
Psat2g055640 Pisum sativum HOM05D003051 ORTHO05D003932 2.0e-50 203.4 137 68.6
TPR.G18000 Trifolium pratense HOM05D003051 ORTHO05D003932 2.0e-50 203.4 137 69.3
Actinidia17302 Actinidia chinensis HOM05D003051 ORTHO05D003932 2.6e-50 203.0 134 70.9
BraA01t00227Z Brassica rapa HOM05D003051 ORTHO05D003932 2.6e-50 203.0 148 65.5
Dinv36492 Davidia involucrata HOM05D003051 ORTHO05D003932 2.6e-50 203.0 134 70.9
Migut.B00582 Erythranthe guttata HOM05D003051 ORTHO05D003932 2.6e-50 203.0 134 69.4
FAN15G3751 Fragaria x ananassa HOM05D003051 ORTHO05D003932 2.6e-50 203.0 147 68.7
FAN27G0244 Fragaria x ananassa HOM05D003051 ORTHO05D003932 2.6e-50 203.0 147 68.7
Glyma.14G085100 Glycine max HOM05D003051 ORTHO05D003932 2.6e-50 203.0 134 69.4
Ah.01g003510 Amaranthus hybridus HOM05D003051 ORTHO05D003932 3.4e-50 202.6 134 70.9
EL10Ac1g02184 Beta vulgaris HOM05D003051 ORTHO05D003932 3.4e-50 202.6 134 71.6
Glyma.17G239700 Glycine max HOM05D003051 ORTHO05D003932 3.4e-50 202.6 134 69.4
Medtr1g018970 Medicago truncatula HOM05D003051 ORTHO05D003932 3.4e-50 202.6 137 68.6
Potri.012G043800 Populus trichocarpa HOM05D003051 ORTHO05D003932 3.4e-50 202.6 137 70.1
VMungo0647G0828 Vigna mungo HOM05D003051 ORTHO05D003932 3.4e-50 202.6 137 69.3
AUR62035016 Chenopodium quinoa HOM05D003051 ORTHO05D003932 4.4e-50 202.2 134 71.6
Phvul.001G024100 Phaseolus vulgaris HOM05D003051 ORTHO05D003932 4.4e-50 202.2 137 67.9
AUR62041898 Chenopodium quinoa HOM05D003051 ORTHO05D003932 5.8e-50 201.8 134 70.9
Ca_05631_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 7.5e-50 201.4 137 67.9
Thhalv10025064m.g Eutrema salsugineum HOM05D003051 ORTHO05D003932 7.5e-50 201.4 137 70.1
Lj7A426G51 Lonicera japonica HOM05D003051 ORTHO05D003932 9.8e-50 201.1 134 69.4
TAR374G0623 Trochodendron aralioides HOM05D003051 ORTHO05D003932 9.8e-50 201.1 134 68.7
TAR374G0874 Trochodendron aralioides HOM05D003051 ORTHO05D003932 9.8e-50 201.1 134 68.7
HanXRQChr05g0134541 Helianthus annuus HOM05D003051 ORTHO05D003932 1.7e-49 200.3 134 71.6
HanXRQChr05g0134611 Helianthus annuus HOM05D003051 ORTHO05D003932 1.7e-49 200.3 134 71.6
Medtr3g054030 Medicago truncatula HOM05D003051 ORTHO05D003932 1.7e-49 200.3 137 66.4
SalBow5G0877 Salvia bowleyana HOM05D003051 ORTHO05D003932 1.7e-49 200.3 134 68.7
Lj5g0018018 Lotus japonicus HOM05D003051 ORTHO05D003932 2.2e-49 199.9 134 68.7
C07p61710 Brassica napus HOM05D003051 ORTHO05D003932 2.9e-49 199.5 137 69.3
BolC7t46596H Brassica oleracea HOM05D003051 ORTHO05D003932 2.9e-49 199.5 137 69.3
Nitab4.5_0000318g0090 Nicotiana tabacum HOM05D003051 ORTHO05D003932 2.9e-49 199.5 134 67.9
Sabra12G0030700 Salix brachista HOM05D003051 ORTHO05D003932 4.9e-49 198.7 137 68.6
GSVIVG01000259001 Vitis vinifera HOM05D003051 ORTHO05D003932 4.9e-49 198.7 134 67.2
vmacro08505 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 8.3e-49 198.0 134 70.1
vmacro22602 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 8.3e-49 198.0 134 70.1
Carub.0007s0384 Capsella rubella HOM05D003051 ORTHO05D003932 1.1e-48 197.6 134 68.7
TPR.G3789 Trifolium pratense HOM05D003051 ORTHO05D003932 1.1e-48 197.6 137 67.9
A03p64250 Brassica napus HOM05D003051 ORTHO05D003932 1.4e-48 197.2 137 68.6
BraA03t15496Z Brassica rapa HOM05D003051 ORTHO05D003932 1.4e-48 197.2 137 68.6
Medtr5g072020 Medicago truncatula HOM05D003051 ORTHO05D003932 1.4e-48 197.2 137 65.7
Cc11_g04320 Coffea canephora HOM05D003051 ORTHO05D003932 2.4e-48 196.4 134 67.2
Peaxi162Scf00699g00636 Petunia axillaris HOM05D003051 ORTHO05D003932 2.4e-48 196.4 134 66.4
Sp7g34130 Schrenkiella parvula HOM05D003051 ORTHO05D003932 2.4e-48 196.4 137 67.9
Solyc08g066020.3 Solanum lycopersicum HOM05D003051 ORTHO05D003932 2.4e-48 196.4 132 67.4
arahy.Tifrunner.gnm1.ann1.11SE8F Arachis hypogaea HOM05D003051 ORTHO05D003932 3.2e-48 196.1 139 66.2
arahy.Tifrunner.gnm1.ann1.GJWA3D Arachis hypogaea HOM05D003051 ORTHO05D003932 3.2e-48 196.1 139 66.2
Eucgr.D00310 Eucalyptus grandis HOM05D003051 ORTHO05D003932 4.1e-48 195.7 140 66.4
Sabra15G0028600 Salix brachista HOM05D003051 ORTHO05D003932 4.1e-48 195.7 137 67.2
Ca_13275_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 5.4e-48 195.3 137 65.7
CAN.G9.7 Capsicum annuum HOM05D003051 ORTHO05D003932 9.2e-48 194.5 132 66.7
arahy.Tifrunner.gnm1.ann1.QNA1HW Arachis hypogaea HOM05D003051 ORTHO05D003932 1.6e-47 193.7 137 65.7
Potri.015G034600 Populus trichocarpa HOM05D003051 ORTHO05D003932 2.7e-47 193.0 137 67.2
Sopen08g019680 Solanum pennellii HOM05D003051 ORTHO05D003932 2.7e-47 193.0 132 66.7
arahy.Tifrunner.gnm1.ann1.53VZ2L Arachis hypogaea HOM05D003051 ORTHO05D003932 3.5e-47 192.6 137 65.0
MD08G1095600 Malus domestica HOM05D003051 ORTHO05D003932 3.5e-47 192.6 137 65.7
Lalb_Chr24g0399381 Lupinus albus HOM05D003051 ORTHO05D003932 6.0e-47 191.8 141 65.2
ATR0222G029 Amborella trichopoda HOM05D003051 ORTHO05D003932 7.8e-47 191.4 132 67.4
SGA_v2.0_scaffold28G11959 Striga asiatica HOM05D003051 ORTHO05D003932 7.8e-47 191.4 120 70.8
RcHm_v2.0_Chr7g0217761 Rosa chinensis HOM05D003051 ORTHO05D003932 1.0e-46 191.0 153 62.7
MD15G1077700 Malus domestica HOM05D003051 ORTHO05D003932 2.3e-46 189.9 137 64.2
SGA_v2.0_scaffold83G26334 Striga asiatica HOM05D003051 ORTHO05D003932 6.6e-46 188.3 120 69.2
PSO384G5107 Papaver somniferum HOM05D003051 ORTHO05D003932 1.1e-45 187.6 139 62.6
PSO339G0046 Papaver somniferum HOM05D003051 ORTHO05D003932 1.5e-45 187.2 139 61.9
Lsat_1_v5_gn_8_62240 Lactuca sativa HOM05D003051 ORTHO05D003932 1.9e-45 186.8 134 65.7
CSS0004660 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 2.1e-44 183.3 134 65.7
MBI18_g02835_MAGBIO Magnolia biondii HOM05D003051 ORTHO05D003932 4.7e-44 182.2 121 68.6
Mapoly0025s0004 Marchantia polymorpha HOM05D003051 ORTHO05D003932 1.8e-43 180.3 134 62.7
Nitab4.5_0002021g0050 Nicotiana tabacum HOM05D003051 ORTHO05D003932 6.8e-43 178.3 178 51.1
BcaNung05309 Brassica carinata HOM05D003051 ORTHO05D003932 6.4e-41 171.8 134 65.7
Pp3c7_5350 Physcomitrium patens HOM05D003051 ORTHO05D003932 2.4e-40 169.9 130 57.7
Zm00001eb302850 Zea mays HOM05D003051 ORTHO05D003932 6.0e-39 165.2 85 94.1
CBR_g21746 Chara braunii HOM05D003051 ORTHO05D003932 1.1e-37 161.0 144 54.2
SMO361G0305 Selaginella moellendorffii HOM05D003051 ORTHO05D003932 1.2e-36 157.5 130 56.2
vmacro18084 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 1.2e-36 157.5 227 40.1
unitig_62.g23741 Utricularia gibba HOM05D003051 ORTHO05D003932 2.6e-34 149.8 137 56.2
Manes.13G154966 Manihot esculenta HOM05D003051 ORTHO05D003932 4.4e-34 149.1 138 58.0
Zm00001eb093690 Zea mays HOM05D003051 ORTHO05D003932 7.6e-34 148.3 112 70.5
AagrBONN_evm.TU.Sc2ySwM_362.1674 Anthoceros agrestis HOM05D003051 ORTHO05D003932 1.4e-32 144.1 121 52.9
Zm00001eb168990 Zea mays HOM05D003051 ORTHO05D003932 1.4e-32 144.1 112 68.8
CiPaw.09G069100 Carya illinoinensis HOM05D003051 ORTHO05D003932 2.4e-32 143.3 90 71.1
Hma1.2p1_0343F.1_g131030 Hydrangea macrophylla HOM05D003051 ORTHO05D003932 3.6e-28 129.4 98 62.2
Zm00001eb311980 Zea mays HOM05D003051 ORTHO05D003932 9.9e-26 121.3 60 95.0
Zm00001eb306880 Zea mays HOM05D003051 ORTHO05D003932 1.7e-25 120.6 61 93.4
Cre03.g146507 Chlamydomonas reinhardtii HOM05D003051 ORTHO05D003932 1.1e-24 117.9 126 45.2
Zm00001eb342140 Zea mays HOM05D003051 ORTHO05D003932 2.4e-24 116.7 61 90.2
MSTRG.20290 Avicennia marina HOM05D003051 ORTHO05D003932 6.6e-22 108.6 67 68.7
CSS0032175 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 1.1e-21 107.8 67 70.1
Cpa.g.sc7.66 Carica papaya HOM05D003051 ORTHO05D003932 2.5e-21 106.7 59 76.3
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 7.3e-21 105.1 59 74.6
PRCOL_00000102 Prasinoderma coloniale HOM05D003051 ORTHO05D003932 7.3e-21 105.1 127 43.3
SEGI_33366 Sequoiadendron giganteum HOM05D003051 ORTHO05D003932 6.2e-20 102.1 59 78.0
SEGI_13307 Sequoiadendron giganteum HOM05D003051 ORTHO05D003932 2.4e-19 100.1 59 74.6
Gorai.002G090700 Gossypium raimondii HOM05D003051 ORTHO05D003932 2.0e-18 97.1 56 75.0
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-17 94.4 67 67.2
AUR62025029 Chenopodium quinoa HOM05D003051 ORTHO05D003932 1.4e-16 90.9 133 42.1
AUR62006503 Chenopodium quinoa HOM05D003051 ORTHO05D003932 1.6e-15 87.4 134 40.3
Hund25238 Selenicereus undatus HOM05D003051 ORTHO05D003932 1.6e-15 87.4 60 66.7
Psat0s3398g0280 Pisum sativum HOM05D003051 ORTHO05D003932 6.0e-15 85.5 46 80.4
Cfa022805 Carpinus fangiana HOM05D003051 ORTHO05D003932 8.7e-14 81.6 121 38.0
Zm00001eb201300 Zea mays HOM05D003051 ORTHO05D003932 8.7e-14 81.6 40 97.5
Haze_27103 Corylus avellana HOM05D003051 ORTHO05D003932 4.3e-13 79.3 94 40.4
Psat0s3398g0120 Pisum sativum HOM05D003051 ORTHO05D003932 1.1e-11 74.7 40 77.5
Oeu019029.1 Olea europaea HOM05D003051 ORTHO05D003932 1.8e-11 73.9 50 70.0
Cpa.g.sc7.67 Carica papaya HOM05D003051 ORTHO05D024854 2.6e-10 70.1 48 70.8
CSS0036370 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 2.9e-09 66.6 87 42.5
HanXRQChr05g0138611 Helianthus annuus HOM05D003051 ORTHO05D003932 2.7e-07 60.1 34 70.6
Gorai.002G090800 Gossypium raimondii HOM05D003051 ORTHO05D003932 3.5e-07 59.7 44 59.1
SEGI_38614 Sequoiadendron giganteum HOM05D003051 ORTHO05D024854 3.5e-07 59.7 58 51.7
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.8e-06 57.4 31 80.6
Zm00001eb178340 Zea mays HOM05D003051 ORTHO05D003932 1.8e-06 57.4 27 88.9
Hma1.2p1_2677F.1_g326730 Hydrangea macrophylla HOM05D003051 ORTHO05D003932 3.0e-06 56.6 35 68.6


User provided reference genes

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