Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1934.5 962 100.0
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1885.9 962 96.8
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1817.4 967 94.1
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1816.2 966 93.9
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1743.8 965 89.9
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1735.3 968 89.5
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1734.2 972 89.0
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1726.8 969 89.0
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1720.3 999 86.9
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1708.0 971 88.4
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1699.5 970 87.4
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1697.9 967 87.6
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1609.7 969 83.5
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1608.2 967 83.4
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1604.7 966 82.8
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1602.4 967 82.9
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1599.3 970 82.4
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1595.5 969 81.9
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1595.1 966 82.3
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1592.8 973 82.3
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1589.3 969 81.4
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1585.1 970 81.2
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1584.7 969 81.9
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1580.1 972 81.4
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1579.7 968 81.4
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1578.9 969 81.9
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1576.2 966 81.3
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 957 82.1
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 966 82.2
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1573.9 951 83.1
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1573.9 958 82.9
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1573.9 958 82.4
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1573.5 967 82.0
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1572.8 951 83.0
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1570.1 951 82.8
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1567.4 955 82.3
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1565.8 966 81.5
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1565.4 967 80.6
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1565.1 948 81.6
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1563.9 969 81.1
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1562.4 968 81.0
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1562.0 957 81.5
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1561.6 943 82.2
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1560.4 971 80.6
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1558.9 951 82.1
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1558.1 951 82.2
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1557.7 958 81.9
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1557.7 969 79.7
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1557.0 971 80.8
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1557.0 971 80.8
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 964 80.8
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1551.2 958 80.4
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1543.5 969 78.7
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1533.5 974 79.3
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1532.7 973 78.3
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 967 79.1
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 973 78.7
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1521.1 964 78.4
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1512.3 968 77.7
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1511.9 966 77.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1508.0 967 77.5
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1506.9 967 77.1
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1503.0 968 77.3
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1502.3 945 78.9
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1502.3 968 77.1
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1499.6 968 77.4
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1495.3 960 77.6
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1490.3 958 78.2
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1489.9 950 78.4
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1489.2 962 77.2
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1487.2 970 75.8
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1483.0 960 77.0
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1483.0 969 76.9
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1481.8 947 77.4
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1481.8 947 77.4
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1481.5 965 77.5
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1480.7 972 75.5
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1478.4 955 77.1
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1476.8 968 77.0
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1474.5 947 77.0
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 981 75.8
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1473.8 947 76.9
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1473.4 950 76.7
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1473.4 844 87.3
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1472.6 947 77.0
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1471.4 963 76.1
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 972 76.5
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1469.9 944 77.0
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1469.9 947 76.8
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1469.9 947 76.8
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 963 77.1
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1467.6 963 77.1
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1466.1 961 77.8
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1464.5 950 76.1
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1464.5 947 76.5
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1463.0 949 76.7
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1461.8 950 76.2
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1461.8 970 76.1
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1450.3 977 76.9
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1442.9 962 74.6
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1438.3 963 74.2
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1411.0 962 74.0
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1408.3 962 71.3
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1401.7 954 71.6
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1383.2 840 83.1
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1356.7 733 91.4
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1355.1 951 71.5
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1333.9 968 68.5
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1298.9 858 75.3
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1287.7 962 69.6
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1218.4 968 66.4
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1179.5 1005 59.2
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1177.5 969 61.2
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1144.0 710 80.0
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1102.4 1029 54.9
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1091.3 943 59.3
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 6.1e-308 1060.8 671 78.8
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 2.2e-305 1052.4 640 81.1
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 3.5e-279 965.3 712 68.0
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 1.6e-220 770.4 775 51.0
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 3.6e-207 726.1 471 76.0
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.3e-188 662.1 444 73.0
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.3e-124 451.8 311 69.1
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 6.0e-114 416.4 1095 27.7
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 1.3e-111 408.7 631 39.1
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 9.7e-96 355.9 207 85.5
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 9.7e-72 276.2 209 70.3
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.0e-64 251.9 183 70.5
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 2.0e-56 225.3 301 44.5
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.1e-51 209.5 125 82.4
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.2e-45 189.5 134 70.9
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.0e-41 174.5 202 46.0
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 1.2e-37 162.9 139 60.4
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 6.0e-29 134.0 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 1.1e-17 96.7 80 63.8


User provided reference genes

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